get_seqs: Get sequences
In gzentner/ZentUtils: Miscellaneous Tools for Sequence Analysis
Description
Usage
Arguments
Value
Examples
View source: R/region_functions.R
Description
Retrieve sequences corresponding to ranges of interest
Usage
1
get_seqs(zu_obj, region_type = "expanded", genome)
Arguments
zu_obj
A ZentTools object.
region_type
Whether to extract sequences from original regions
("imported") or expanded regions ("expanded").
genome
A BSgenome object for the organism of interest.
Value
A DNAStringSet object in the 'seqs' slot of the ZentUtils object.
Examples
1
2
genome <- BSgenome.Scerevisiae.UCSC.sacCer3
zent <- get_seqs(zent, region_type = "expanded", genome = genome)
gzentner/ZentUtils documentation built on June 16, 2021, 12:24 a.m.
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Description Usage Arguments Value Examples
View source: R/region_functions.R
Description
Retrieve sequences corresponding to ranges of interest
Usage
1 | get_seqs(zu_obj, region_type = "expanded", genome)
|
Arguments
zu_obj |
A ZentTools object. |
region_type |
Whether to extract sequences from original regions ("imported") or expanded regions ("expanded"). |
genome |
A BSgenome object for the organism of interest. |
Value
A DNAStringSet object in the 'seqs' slot of the ZentUtils object.
Examples
1 2 | genome <- BSgenome.Scerevisiae.UCSC.sacCer3
zent <- get_seqs(zent, region_type = "expanded", genome = genome)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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