Files in h-a-graham/beavertools
Tools to monitor the expansion of beaver populations and predict future territory capacity.
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/add_map_features.R
R/animate_capacity.R
R/animate_maps.R
R/check_spatial.R
R/create_plot_ext.R
R/data.R
R/estimate_territories.R
R/fkd.R
R/gen_territories.R
R/inflate_bounds.R
R/kde_plot.R
R/panel_plot.R
R/pipeimport.R
R/plot_capacity.R
R/plot_points.R
R/random_palette.R
R/sim_terr_cap.R
R/terr_plot.R
R/territory_cap.R
R/user_classify.R
README.Rmd
README.md
R_Otter_workflow/1_Feed_Sign_Mapping/FeedSignTerrPlots.R
R_Otter_workflow/1_Feed_Sign_Mapping/exports/reclass_terr_list.Rds
R_Otter_workflow/1_Feed_Sign_Mapping/maps/AnimatedFeeding.gif
R_Otter_workflow/1_Feed_Sign_Mapping/maps/OtterFeedDensity.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/OtterFeedDensitySI.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/OtterFeedSigns.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/OtterOtherSigns.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/OtterTerrsUser.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/OtterTerrsUserSI.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/AnimatedFeedingb.gif
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedDensity.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedDensitySI2.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedDensityb.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedDensityc.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedDensityd.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedSigns.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedSignsNBM.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterFeedSignsNBMb.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterOtherSigns.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterOtherSignsb.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsAuto.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsAutob.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsAutoc.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsAutod.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsUser.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsUserCHECK.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsUserb.png
R_Otter_workflow/1_Feed_Sign_Mapping/maps/SS/OtterTerrsUserd.png
R_Otter_workflow/2_Territory_simulations/Observed_Terr_Habitat.R
R_Otter_workflow/2_Territory_simulations/Terr_simulation.R
R_Otter_workflow/2_Territory_simulations/plots/Lower_Upper_Capacity_maps.png
R_Otter_workflow/2_Territory_simulations/plots/SS/Lower_Upper_Capacity_maps.jpg
R_Otter_workflow/2_Territory_simulations/plots/SS/OSMM_2_5.jpg
R_Otter_workflow/2_Territory_simulations/plots/SS/OSMM_3_5.jpg
R_Otter_workflow/2_Territory_simulations/plots/SS/OSMM_NEW.jpg
R_Otter_workflow/2_Territory_simulations/plots/SS/OSMM_OLD.jpg
R_Otter_workflow/2_Territory_simulations/plots/SS/OSMM_terrs.jpg
R_Otter_workflow/2_Territory_simulations/plots/SS/OSMM_terrsV1.jpg
R_Otter_workflow/2_Territory_simulations/plots/SimulationResults1.png
R_Otter_workflow/2_Territory_simulations/plots/TerritoryLengthDist.png
R_Otter_workflow/2_Territory_simulations/terr_BFI_df.R
R_Otter_workflow/3_Pop_expansion_predictions/Pop_expansion_predict.R
R_Otter_workflow/3_Pop_expansion_predictions/add_general_facet_labs.R
R_Otter_workflow/3_Pop_expansion_predictions/logistic_growth.R
R_Otter_workflow/3_Pop_expansion_predictions/plots/MgmtDynamics.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/MgmtDynamicsAGR.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/MgmtDynamicsMatrix.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/MM_preds.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/MM_predsV2.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/MgmtDynamicsV2.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryDynamics.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryPrediction.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryPredictionOLD.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryPredictionb.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryPredictionc.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryPredictioncV1.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryPredictiond.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/TerritoryPredictiond2.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/SS/Territory_predictionMMvsORN.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/TerritoryDynamicsV2.png
R_Otter_workflow/3_Pop_expansion_predictions/plots/TerritoryPredictiond3.png
R_Otter_workflow/4_summ_stats/Paper_summ_stats.R
R_Otter_workflow/4_summ_stats/plots/feeding_Terr_trends.png
R_Otter_workflow/4_summ_stats/plots/feeding_trends.png
R_Otter_workflow/5_LocationMap/5_LocationMap.R
R_Otter_workflow/5_LocationMap/map/loc_map.png
R_Otter_workflow/5_LocationMap/map/loc_mapV2.png
R_Otter_workflow/5_LocationMap/map/slopev1.png
R_Otter_workflow/5_LocationMap/map/widthv1.png
_pkgdown.yml
beavertools.Rproj
data-raw/Otter_survey_raw/Dam_Dwelling.gpkg
data-raw/Otter_survey_raw/Otter_FS_20_21/Dam16.DBF
data-raw/Otter_survey_raw/Otter_FS_20_21/Dam16.PRJ
data-raw/Otter_survey_raw/Otter_FS_20_21/Dam16.SHP
data-raw/Otter_survey_raw/Otter_FS_20_21/Dam16.SHX
data-raw/Otter_survey_raw/Otter_FS_20_21/Dwellings16.DBF
data-raw/Otter_survey_raw/Otter_FS_20_21/Dwellings16.PRJ
data-raw/Otter_survey_raw/Otter_FS_20_21/Dwellings16.SHP
data-raw/Otter_survey_raw/Otter_FS_20_21/Dwellings16.SHX
data-raw/Otter_survey_raw/Otter_FS_20_21/High-Level Impact.DBF
data-raw/Otter_survey_raw/Otter_FS_20_21/High-Level Impact.PRJ
data-raw/Otter_survey_raw/Otter_FS_20_21/High-Level Impact.SHP
data-raw/Otter_survey_raw/Otter_FS_20_21/High-Level Impact.SHX
data-raw/Otter_survey_raw/Otter_FS_20_21/Low-Level Impact.DBF
data-raw/Otter_survey_raw/Otter_FS_20_21/Low-Level Impact.PRJ
data-raw/Otter_survey_raw/Otter_FS_20_21/Low-Level Impact.SHP
data-raw/Otter_survey_raw/Otter_FS_20_21/Low-Level Impact.SHX
data-raw/Otter_survey_raw/Otter_FS_20_21/Medium-Level Impact.DBF
data-raw/Otter_survey_raw/Otter_FS_20_21/Medium-Level Impact.PRJ
data-raw/Otter_survey_raw/Otter_FS_20_21/Medium-Level Impact.SHP
data-raw/Otter_survey_raw/Otter_FS_20_21/Medium-Level Impact.SHX
data-raw/Otter_survey_raw/Otter_FS_20_21/Other_signs/Other_Signs16.DBF
data-raw/Otter_survey_raw/Otter_FS_20_21/Other_signs/Other_Signs16.PRJ
data-raw/Otter_survey_raw/Otter_FS_20_21/Other_signs/Other_Signs16.SHP
data-raw/Otter_survey_raw/Otter_FS_20_21/Other_signs/Other_Signs16.SHX
data-raw/Otter_survey_raw/SysSurv_FS_1920.cpg
data-raw/Otter_survey_raw/SysSurv_FS_1920.dbf
data-raw/Otter_survey_raw/SysSurv_FS_1920.prj
data-raw/Otter_survey_raw/SysSurv_FS_1920.sbn
data-raw/Otter_survey_raw/SysSurv_FS_1920.sbx
data-raw/Otter_survey_raw/SysSurv_FS_1920.shp
data-raw/Otter_survey_raw/SysSurv_FS_1920.shp.xml
data-raw/Otter_survey_raw/SysSurv_FS_1920.shx
data-raw/Otter_survey_raw/SysSurv_FS_2021.dbf
data-raw/Otter_survey_raw/SysSurv_FS_2021.prj
data-raw/Otter_survey_raw/SysSurv_FS_2021.shp
data-raw/Otter_survey_raw/SysSurv_FS_2021.shx
data-raw/Otter_survey_raw/Sys_Surv_15_16.cpg
data-raw/Otter_survey_raw/Sys_Surv_15_16.dbf
data-raw/Otter_survey_raw/Sys_Surv_15_16.prj
data-raw/Otter_survey_raw/Sys_Surv_15_16.sbn
data-raw/Otter_survey_raw/Sys_Surv_15_16.sbx
data-raw/Otter_survey_raw/Sys_Surv_15_16.shp
data-raw/Otter_survey_raw/Sys_Surv_15_16.shp.xml
data-raw/Otter_survey_raw/Sys_Surv_15_16.shx
data-raw/Otter_survey_raw/Sys_Surv_16_17.cpg
data-raw/Otter_survey_raw/Sys_Surv_16_17.dbf
data-raw/Otter_survey_raw/Sys_Surv_16_17.prj
data-raw/Otter_survey_raw/Sys_Surv_16_17.sbn
data-raw/Otter_survey_raw/Sys_Surv_16_17.sbx
data-raw/Otter_survey_raw/Sys_Surv_16_17.shp
data-raw/Otter_survey_raw/Sys_Surv_16_17.shp.xml
data-raw/Otter_survey_raw/Sys_Surv_16_17.shx
data-raw/Otter_survey_raw/Sys_Surv_17_18.cpg
data-raw/Otter_survey_raw/Sys_Surv_17_18.dbf
data-raw/Otter_survey_raw/Sys_Surv_17_18.prj
data-raw/Otter_survey_raw/Sys_Surv_17_18.sbn
data-raw/Otter_survey_raw/Sys_Surv_17_18.sbx
data-raw/Otter_survey_raw/Sys_Surv_17_18.shp
data-raw/Otter_survey_raw/Sys_Surv_17_18.shp.xml
data-raw/Otter_survey_raw/Sys_Surv_17_18.shx
data-raw/Otter_survey_raw/Sys_Surv_18_19.cpg
data-raw/Otter_survey_raw/Sys_Surv_18_19.dbf
data-raw/Otter_survey_raw/Sys_Surv_18_19.prj
data-raw/Otter_survey_raw/Sys_Surv_18_19.sbn
data-raw/Otter_survey_raw/Sys_Surv_18_19.sbx
data-raw/Otter_survey_raw/Sys_Surv_18_19.shp
data-raw/Otter_survey_raw/Sys_Surv_18_19.shp.xml
data-raw/Otter_survey_raw/Sys_Surv_18_19.shx
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.cpg
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.dbf
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.prj
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.sbn
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.sbx
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.shp
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.shp.xml
data-raw/Otter_survey_raw/Sys_Surv_Pre_15.shx
data-raw/RivOtter_BeaverNet.R
data-raw/RivOtter_Catchment.R
data-raw/RivOtter_DwellsDams.R
data-raw/RivOtter_FeedSigns.R
data-raw/catchment_area/Otter_Catch_fix.gpkg
data-raw/robt_20_21_clean.R
data/RivOtter_BeaverNet.rda
data/RivOtter_Catch_Area.rda
data/RivOtter_FeedSigns.rda
data/RivOtter_OtherSigns.rda
man/RivOtter_BeaverNet.Rd
man/RivOtter_Catch_Area.Rd
man/RivOtter_FeedSigns.Rd
man/RivOtter_OtherSigns.Rd
man/animate_capacity.Rd
man/animate_maps.Rd
man/check_auto_terr.Rd
man/check_user_terr.Rd
man/estimate_territories.Rd
man/figures/AnimatedFeeding.gif
man/figures/Lower_Upper_Capacity_maps.png
man/figures/MgmtDynamics.png
man/figures/TerritoryDynamicsV2.png
man/figures/TerritoryPredictiond3.png
man/forage_density.Rd
man/gen_territories.Rd
man/get_rivers.Rd
man/inflate_bbox.Rd
man/panel_plot.Rd
man/pipe.Rd
man/plot_capacity.Rd
man/plot_feeding.Rd
man/plot_forage_density.Rd
man/plot_other_signs.Rd
man/plot_territories.Rd
man/sim_terr_cap.Rd
man/territory_cap.Rd
man/user_classify.Rd
