| addcount | addcount - adds a count of years and avC to a data.frame |
| addlnorm | addlnorm - estimates a log-normal distribution from output of... |
| addnorm | addnorm - adds a normal distribution to a histogram of a data... |
| checkDF | checkDF - checks a CPUE data.frame has all required fields |
| coef.CEout | coef.CEout - S3 method to extract the parameter values from a... |
| countgtzero | countgtzero used in apply to count the number of zeros in a... |
| diagnosticPlot | diagnosticPlot produces diagnostic plots of the regression. |
| dosingle | dosingle conducts a standardization of indat using the... |
| fishery | fishery - generates vectors of year, catch, effort, and cpue |
| geomean | geomean: the geometric mean of a vector corrected for... |
| getfact | getfact extracts parameter estimates for a given factor from... |
| getrmse | getrmse calculates the rmse of the input 'invar' series |
| getsps | getsps reads in the species catch and effort data |
| getStand | getStand - extracts major results from an CEout object |
| impactplot | impactplot - Plots relative contribution to CPUE trend of... |
| inthist | inthist - a replacement for the hist function for use with... |
| iscol | incol is a utility to determine is a column is present in a... |
| lefthist | lefthist draws a histogram up the y-axis |
| makecategorical | makecategorical - converts given variables into categorical... |
| makedatasum | makedatasum generates a table summarizing information about... |
| makeLabel | makeLabel Convert a vector of numbers or strings into a... |
| makemodels | makemodels - makes a list of models with their labels |
| makeonemodel | makeonemodel generates a single model for use in dosingle |
| plotdata | plotdata generates graphs of CE and log-transformed CE data. |
| plotfishery | plotfishery plots an array of data for the fishery. |
| plotprep | plotprep: sets up a window and the par values for a single... |
| plotstand | plotstand - plot optimum model from standLM vs Geometric mean |
| plotstandFY | plotstandFY - optimum model & Geometric mean for fishing... |
| properties | properties - used to check a data.frame before... |
| qqdiag | qqdiag generates a qqplot with a histogram of residuals |
| qqplotout | qqplotout plots up a single qqplot for a lm model |
| quants | quants used in apply to count the number > 1 in a vector |
| r4cpue | r4cpue a set of functions to assist with CPUE standardization |
| saveresults | saveresults sends the tables generated to a text file in... |
| scaleCE | scaleCE - Function to scale a vector of CPUE to a mean of one... |
| selectdata | selectdata - select records from the sessf data |
| sps | sps - a 11603 x 10 data.frame for testing CPUE functions |
| standLM | standLM Conduct a standarization on log-transformed CPUE... |
| summary.CEout | summary.CEout - S3 function to print standardization results |
| toXL | toXL copies a data.frame or matrix to the clipboard |
| turnover | turnover Estimate turnover of vessels from catch by vessel by... |
| yearBubble | yearBubble: Generates a bubbleplot of x against Year. |
| yearNA | yearNA - counts NAs per year in each numeric field in a... |
| yearZero | yearZero - examine listed variables for zeros and NAs |
