makedatasum: makedatasum generates a table summarizing information about...

In haddonm/r4cpue: Functions to assist with CPUE standardization

Description

makedatasum uses the two input data.frames to generates a table summarizing information about data, this includes the Total Catch of the species, number of records used, the catch used in the analyses, the number of Vessels, the GeoMean, the optimum standardized mean estimates, their StDev, the total catch <30Kg, and the proportion of catch <30Kg.

Usage

makedatasum(InData, InData1, out)

Arguments

InData	the unselected species data, generally sps
InData1	the data.frame after selection has been applied, sps1
out	the output from standLM or dosingle, usually out

Value

a matrix of each summary variable by year

Examples

## Not run: 
data(sps)
sps$CE <- NA
sps$LnCE <- NA
pick <- which((sps$catch_kg > 0) & (sps$Effort > 0))
sps$CE[pick] <- sps$catch_kg[pick]/sps$Effort[pick]
sps$LnCE[pick] <- log(sps$CE[pick])
answer <- selectdata(sps,dependent="LnCE",Ldepth=0,Udepth=600,
startyear=1986,finalyear=2015,zones=c(10,20,30),method=c("TW","TDO"),
fishery="SET")
sps1 <- answer$sps1
makedatasum(sps,sps1)

## End(Not run)

haddonm/r4cpue documentation built on May 11, 2020, 1:31 a.m.