get_spectra_list: Get a list of spectra

In hadexversum/powerHaDeX: Efficient Simulation of HDX-MS Data and Tools for the Statistical Analysis

Get a list of spectra

Description

Create a list of data tables of spectra for all states jointly or paired states.

Usage

get_spectra_list(theoretical_spectra, compare_pairs = FALSE, reference = NA)

Arguments

theoretical_spectra	a data table or a list of data tables of theoretical spectra created by the function simulate_theoretical_spectra.
compare_pairs	if FALSE, all groups (defined by the protection factor) will be considered jointly. If TRUE (default), each protection factor will be considered together with the protection factor given by the 'reference' parameter.
reference	protection factor that will be used for comparison to other protection factors in. The function accepts either NA (for comparing all protection factors), a number (for comparing with reference value of protection factor) or "all" (for pairwise comparisons of all the possible combinations). Default NA.

Details

If the parameter compare_pairs is FALSE then all the provided protection factors will be considered jointly. If compare_pairs is TRUE, then the parameter reference is necessary (a single number or "all"). Then the data is split via the supplementary function get_paired_spectra into data tables of spectra with paired biological states (the reference protection factor and the protection factor of interest if provided, or all the possible pairs if reference equals "all").

Value

list of data.tables containing spectra - for paired states or all states.

hadexversum/powerHaDeX documentation built on Sept. 4, 2022, 12:36 p.m.