revdep/problems.md
In hadley/ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics
activAnalyzer (patchwork)
actxps (thematic)
AeRobiology (unknown)
# <details>
#
# * Version: 2.0.1
# * GitHub: NA
# * Source code: https://github.com/cran/AeRobiology
# * Date/Publication: 2019-06-03 06:20:03 UTC
# * Number of recursive dependencies: 98
#
# Run `revdepcheck::cloud_details(, "AeRobiology")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘my-vignette.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘my-vignette.Rmd’
# ...
# + export.plot = FALSE, export.result = FALSE, n.types = 3,
# + y.start = 2011, y.end = .... [TRUNCATED]
#
# > iplot_abundance(munich_pollen, interpolation = FALSE,
# + export.plot = FALSE, export.result = FALSE, n.types = 3,
# + y.start = 2011, y.end = .... [TRUNCATED]
#
# When sourcing ‘my-vignette.R’:
# Error: subscript out of bounds
# Execution halted
#
# ‘my-vignette.Rmd’ using ‘UTF-8’... failed
# ```
agricolaeplotr (missing labels)
AnalysisLin (plotly)
animbook (plotly)
ANN2 (missing labels)
aplot (patchwork)
applicable (missing labels)
ASRgenomics (factoextra)
autoplotly (plotly)
autoReg (patchwork)
bartMan (ggnewscale)
bayesAB (missing labels)
BayesGrowth (ggdist)
BayesianReasoning (missing labels)
BayesMallows (missing labels)
bayesplot (missing labels)
bayestestR (patchwork)
beastt (ggdist)
besthr (patchwork)
biclustermd (xintercept/yintercept class)
biodosetools (missing labels)
boxly (plotly)
braidReports (annotation_logticks)
breathtestcore (plot slots)
brolgar (facet params: as.table)
cartograflow (plotly)
cartographr (unknown)
# <details>
#
# * Version: 0.2.2
# * GitHub: https://github.com/da-wi/cartographr
# * Source code: https://github.com/cran/cartographr
# * Date/Publication: 2024-06-28 14:50:09 UTC
# * Number of recursive dependencies: 99
#
# Run `revdepcheck::cloud_details(, "cartographr")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > # This file is part of the standard setup for testthat.
# > # It is recommended that you do not modify it.
# > #
# > # Where should you do additional test configuration?
# > # Learn more about the roles of various files in:
# > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
# > # * https://testthat.r-lib.org/articles/special-files.html
# ...
# 21. │ └─base::stop(...)
# 22. └─base::.handleSimpleError(...)
# 23. └─rlang (local) h(simpleError(msg, call))
# 24. └─handlers[[1L]](cnd)
# 25. └─cli::cli_abort(...)
# 26. └─rlang::abort(...)
#
# [ FAIL 1 | WARN 0 | SKIP 0 | PASS 106 ]
# Error: Test failures
# Execution halted
# ```
#
# ## In both
#
# * checking installed package size ... NOTE
# ```
# installed size is 5.3Mb
# sub-directories of 1Mb or more:
# data 3.5Mb
# ```
cats (plotly)
cheem (plotly)
chillR (patchwork)
chronicle (plotly)
circhelp (patchwork)
clifro (missing labels)
clinDataReview (plotly)
clinUtils (plotly)
CohortPlat (plotly)
CoreMicrobiomeR (plotly)
correlationfunnel (plotly)
corrViz (plotly)
countfitteR (missing labels)
covidcast (unknown)
# <details>
#
# * Version: 0.5.2
# * GitHub: https://github.com/cmu-delphi/covidcast
# * Source code: https://github.com/cran/covidcast
# * Date/Publication: 2023-07-12 23:40:06 UTC
# * Number of recursive dependencies: 93
#
# Run `revdepcheck::cloud_details(, "covidcast")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(covidcast)
# We encourage COVIDcast API users to register on our mailing list:
# https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api
# We'll send announcements about new data sources, package updates,
# server maintenance, and new features.
# >
# ...
# • plot/default-county-choropleth.svg
# • plot/default-hrr-choropleth-with-include.svg
# • plot/default-msa-choropleth-with-include.svg
# • plot/default-state-choropleth-with-include.svg
# • plot/default-state-choropleth-with-range.svg
# • plot/state-choropleth-with-no-metadata.svg
# • plot/state-line-graph-with-range.svg
# • plot/state-line-graph-with-stderrs.svg
# Error: Test failures
# Execution halted
# ```
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘plotting-signals.Rmd’
# ...
# > knitr::opts_chunk$set(fig.width = 6, fig.height = 4)
#
# > plot(dv)
#
# When sourcing ‘plotting-signals.R’:
# Error: Problem while setting up geom aesthetics.
# ℹ Error occurred in the 6th layer.
# Caused by error in `$<-.data.frame`:
# ! replacement has 1 row, data has 0
# Execution halted
#
# ‘correlation-utils.Rmd’ using ‘UTF-8’... OK
# ‘covidcast.Rmd’ using ‘UTF-8’... OK
# ‘external-data.Rmd’ using ‘UTF-8’... OK
# ‘multi-signals.Rmd’ using ‘UTF-8’... OK
# ‘plotting-signals.Rmd’ using ‘UTF-8’... failed
# ```
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘correlation-utils.Rmd’ using rmarkdown
# --- finished re-building ‘correlation-utils.Rmd’
#
# --- re-building ‘covidcast.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking data for non-ASCII characters ... NOTE
# ```
# Note: found 20 marked UTF-8 strings
# ```
crosshap (plotly)
cubble (patchwork)
deeptime (ggnewscale)
distributional (ggdist)
dittoViz (plotly)
EGM (missing labels)
entropart (default access)
epiCleanr (ggdist)
esci (ggdist)
evalITR (unknown)
# <details>
#
# * Version: 1.0.0
# * GitHub: https://github.com/MichaelLLi/evalITR
# * Source code: https://github.com/cran/evalITR
# * Date/Publication: 2023-08-25 23:10:06 UTC
# * Number of recursive dependencies: 167
#
# Run `revdepcheck::cloud_details(, "evalITR")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘cv_multiple_alg.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘cv_multiple_alg.Rmd’
# ...
# intersect, setdiff, setequal, union
#
#
# > load("../data/star.rda")
# Warning in readChar(con, 5L, useBytes = TRUE) :
# cannot open compressed file '../data/star.rda', probable reason 'No such file or directory'
#
# ...
# Execution halted
#
# ‘cv_multiple_alg.Rmd’ using ‘UTF-8’... failed
# ‘cv_single_alg.Rmd’ using ‘UTF-8’... failed
# ‘install.Rmd’ using ‘UTF-8’... OK
# ‘paper_alg1.Rmd’ using ‘UTF-8’... OK
# ‘sample_split.Rmd’ using ‘UTF-8’... failed
# ‘sample_split_caret.Rmd’ using ‘UTF-8’... failed
# ‘user_itr.Rmd’ using ‘UTF-8’... failed
# ‘user_itr_algs.Rmd’ using ‘UTF-8’... failed
# ```
#
# * checking dependencies in R code ... NOTE
# ```
# Namespaces in Imports field not imported from:
# ‘forcats’ ‘rqPen’ ‘utils’
# All declared Imports should be used.
# ```
eventstudyr (missing labels)
EvoPhylo (patchwork)
expirest (missing labels)
explainer (plotly)
ezEDA (missing labels)
ezplot (0-length width)
fable.prophet (ggdist)
fabletools (ggdist)
factoextra (0-length width)
fairmodels (missing labels)
fddm (ggforce)
feasts (missing labels)
ffp (ggdist)
fido (ggdist)
flipr (unknown)
# <details>
#
# * Version: 0.3.3
# * GitHub: https://github.com/LMJL-Alea/flipr
# * Source code: https://github.com/cran/flipr
# * Date/Publication: 2023-08-23 09:00:02 UTC
# * Number of recursive dependencies: 106
#
# Run `revdepcheck::cloud_details(, "flipr")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘alternative.Rmd’ using rmarkdown
# --- finished re-building ‘alternative.Rmd’
#
# --- re-building ‘exactness.Rmd’ using rmarkdown
#
# Quitting from lines 142-177 [unnamed-chunk-1] (exactness.Rmd)
# Error: processing vignette 'exactness.Rmd' failed with diagnostics:
# subscript out of bounds
# --- failed re-building ‘exactness.Rmd’
#
# --- re-building ‘flipr.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘exactness.Rmd’
# ...
#
# > library(flipr)
#
# > load("../R/sysdata.rda")
# Warning in readChar(con, 5L, useBytes = TRUE) :
# cannot open compressed file '../R/sysdata.rda', probable reason 'No such file or directory'
#
# ...
# cannot open compressed file '../R/sysdata.rda', probable reason 'No such file or directory'
#
# When sourcing ‘plausibility.R’:
# Error: cannot open the connection
# Execution halted
#
# ‘alternative.Rmd’ using ‘UTF-8’... OK
# ‘exactness.Rmd’ using ‘UTF-8’... failed
# ‘flipr.Rmd’ using ‘UTF-8’... failed
# ‘plausibility.Rmd’ using ‘UTF-8’... failed
# ```
#
# * checking installed package size ... NOTE
# ```
# installed size is 11.0Mb
# sub-directories of 1Mb or more:
# doc 9.1Mb
# libs 1.2Mb
# ```
foqat (ggnewscale)
forestly (patchwork)
frailtyEM (plotly)
funcharts (patchwork)
geomtextpath (default access)
GGally (missing labels)
gganimate (gganimate)
ggbrain (ggnewscale)
ggbreak (patchwork)
ggdark (default access)
ggdist (ggdist)
ggDoubleHeat (ggnewscale)
ggeasy (missing labels)
ggedit (saved to disk)
ggESDA (passing NULL aesthetic mapping)
ggfixest (visual differences)
ggforce (ggforce)
Note: facet_zoom/facet_col/facet_row
ggformula (docs)
ggfortify (tests)
gggenomes (patchwork)
ggh4x (unknown)
# <details>
#
# * Version: 0.2.8
# * GitHub: https://github.com/teunbrand/ggh4x
# * Source code: https://github.com/cran/ggh4x
# * Date/Publication: 2024-01-23 21:00:02 UTC
# * Number of recursive dependencies: 77
#
# Run `revdepcheck::cloud_details(, "ggh4x")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘ggh4x-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: guide_stringlegend
# > ### Title: String legend
# > ### Aliases: guide_stringlegend
# >
# > ### ** Examples
# >
# > p <- ggplot(mpg, aes(displ, hwy)) +
# + geom_point(aes(colour = manufacturer))
# >
# > # String legend can be set in the `guides()` function
# > p + guides(colour = guide_stringlegend(ncol = 2))
# Error in (function (layer, df) :
# argument "theme" is missing, with no default
# Calls: <Anonymous> ... use_defaults -> eval_from_theme -> %||% -> calc_element
# Execution halted
# ```
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(ggh4x)
# Loading required package: ggplot2
# >
# > test_check("ggh4x")
# [ FAIL 2 | WARN 20 | SKIP 18 | PASS 753 ]
#
# ...
# 25. └─ggplot2 (local) compute_geom_2(..., self = self)
# 26. └─self$geom$use_defaults(...)
# 27. └─ggplot2 (local) use_defaults(..., self = self)
# 28. └─ggplot2:::eval_from_theme(default_aes, theme)
# 29. ├─calc_element("geom", theme) %||% .default_geom_element
# 30. └─ggplot2::calc_element("geom", theme)
#
# [ FAIL 2 | WARN 20 | SKIP 18 | PASS 753 ]
# Error: Test failures
# Execution halted
# ```
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘Facets.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘Miscellaneous.Rmd’
# ...
#
# > ggplot(diamonds, aes(price, carat, colour = clarity)) +
# + geom_point(shape = ".") + scale_colour_brewer(palette = "Dark2",
# + guide = "stri ..." ... [TRUNCATED]
# Warning: The S3 guide system was deprecated in ggplot2 3.5.0.
# ℹ It has been replaced by a ggproto system that can be extended.
#
# ...
# ℹ Error occurred in the 1st layer.
# Caused by error in `setup_params()`:
# ! A discrete 'nbinom' distribution cannot be fitted to continuous data.
# Execution halted
#
# ‘Facets.Rmd’ using ‘UTF-8’... OK
# ‘Miscellaneous.Rmd’ using ‘UTF-8’... failed
# ‘PositionGuides.Rmd’ using ‘UTF-8’... OK
# ‘Statistics.Rmd’ using ‘UTF-8’... failed
# ‘ggh4x.Rmd’ using ‘UTF-8’... OK
# ```
gghighlight (default access)
ggHoriPlot (patchwork)
ggiraph (additional params)
ggiraphExtra (additional params)
ggmice (plotly)
ggmulti (custom use_defaults)
ggnewscale (ggnewscale)
ggparallel (unknown)
# <details>
#
# * Version: 0.4.0
# * GitHub: https://github.com/heike/ggparallel
# * Source code: https://github.com/cran/ggparallel
# * Date/Publication: 2024-03-09 22:00:02 UTC
# * Number of recursive dependencies: 51
#
# Run `revdepcheck::cloud_details(, "ggparallel")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > # This file is part of the standard setup for testthat.
# > # It is recommended that you do not modify it.
# > #
# > # Where should you do additional test configuration?
# > # Learn more about the roles of various files in:
# > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
# > # * https://testthat.r-lib.org/articles/special-files.html
# ...
# 12. └─self$get_layer_key(params, layers[include], data[include], theme)
# 13. └─ggplot2 (local) get_layer_key(...)
# 14. └─base::Map(...)
# 15. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
# 16. └─ggplot2 (local) `<fn>`(layer = dots[[1L]][[1L]], df = dots[[2L]][[1L]])
# 17. └─layer$compute_geom_2(key, single_params, theme)
#
# [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
# Error: Test failures
# Execution halted
# ```
ggpicrust2 (patchwork)
ggpie (ggnewscale)
ggplotlyExtra (plotly)
ggpol (default access)
ggpubr (update tests)
ggraph (guide theme passing)
ggredist (unknown)
# <details>
#
# * Version: 0.0.2
# * GitHub: https://github.com/alarm-redist/ggredist
# * Source code: https://github.com/cran/ggredist
# * Date/Publication: 2022-11-23 11:20:02 UTC
# * Number of recursive dependencies: 67
#
# Run `revdepcheck::cloud_details(, "ggredist")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘ggredist-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: geom_district_text
# > ### Title: Label Map Regions
# > ### Aliases: geom_district_text geom_district_label
# > ### stat_district_coordinates StatDistrictCoordinates GeomDistrictText
# > ### Keywords: datasets
# >
# > ### ** Examples
# ...
# 22. │ └─coord$transform(data, panel_params)
# 23. │ └─ggplot2 (local) transform(..., self = self)
# 24. │ └─ggplot2:::sf_rescale01(...)
# 25. │ └─sf::st_normalize(x, c(x_range[1], y_range[1], x_range[2], y_range[2]))
# 26. └─base::.handleSimpleError(...)
# 27. └─rlang (local) h(simpleError(msg, call))
# 28. └─handlers[[1L]](cnd)
# 29. └─cli::cli_abort(...)
# 30. └─rlang::abort(...)
# Execution halted
# ```
ggRtsy (missing labels)
ggseqplot (length 0 width)
ggside (unknown)
# <details>
#
# * Version: 0.3.1
# * GitHub: https://github.com/jtlandis/ggside
# * Source code: https://github.com/cran/ggside
# * Date/Publication: 2024-03-01 09:12:37 UTC
# * Number of recursive dependencies: 76
#
# Run `revdepcheck::cloud_details(, "ggside")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(ggplot2)
# > library(ggside)
# Registered S3 method overwritten by 'ggside':
# method from
# +.gg ggplot2
# >
# ...
# • ops_meaningful/alpha-0-5-from-function.svg
# • side_layers/boxplot2.svg
# • vdiff_irisScatter/collapsed-histo.svg
# • vdiff_irisScatter/facetgrid-collapsed-density.svg
# • vdiff_irisScatter/facetgrid-histo.svg
# • vdiff_irisScatter/facetgrid-side-density.svg
# • vdiff_irisScatter/stacked-side-density.svg
# • vdiff_irisScatter/yside-histo.svg
# Error: Test failures
# Execution halted
# ```
#
# * checking for code/documentation mismatches ... WARNING
# ```
# Codoc mismatches from documentation object 'geom_xsideabline':
# geom_xsidehline
# Code: function(mapping = NULL, data = NULL, position = "identity",
# ..., yintercept, na.rm = FALSE, show.legend = NA)
# Docs: function(mapping = NULL, data = NULL, ..., yintercept, na.rm =
# FALSE, show.legend = NA)
# Argument names in code not in docs:
# position
# Mismatches in argument names (first 3):
# Position: 3 Code: position Docs: ...
# ...
# Docs: function(mapping = NULL, data = NULL, stat = "identity",
# position = "identity", ..., lineend = "butt", linejoin
# = "round", linemitre = 10, arrow = NULL, na.rm =
# FALSE, show.legend = NA, inherit.aes = TRUE)
# Argument names in code not in docs:
# arrow.fill
# Mismatches in argument names:
# Position: 10 Code: arrow.fill Docs: na.rm
# Position: 11 Code: na.rm Docs: show.legend
# Position: 12 Code: show.legend Docs: inherit.aes
# ```
ggspatial (missing defaults)
ggtern (ggtern)
ggupset (unknown)
# <details>
#
# * Version: 0.4.0
# * GitHub: https://github.com/const-ae/ggupset
# * Source code: https://github.com/cran/ggupset
# * Date/Publication: 2024-06-24 10:10:04 UTC
# * Number of recursive dependencies: 46
#
# Run `revdepcheck::cloud_details(, "ggupset")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘ggupset-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: axis_combmatrix
# > ### Title: Convert delimited text labels into a combination matrix axis
# > ### Aliases: axis_combmatrix
# >
# > ### ** Examples
# >
# > library(ggplot2)
# ...
# Datsun 710 Cyl: 4_Gears: 4
# Hornet 4 Drive Cyl: 6_Gears: 3
# Hornet Sportabout Cyl: 8_Gears: 3
# Valiant Cyl: 6_Gears: 3
# > ggplot(mtcars, aes(x=combined)) +
# + geom_bar() +
# + axis_combmatrix(sep = "_")
# Error in as.unit(e2) : object is not coercible to a unit
# Calls: <Anonymous> ... polylineGrob -> is.unit -> unit.c -> Ops.unit -> as.unit
# Execution halted
# ```
ggVennDiagram (plotly)
greatR (patchwork)
Greymodels (plotly)
gtExtras (unknown)
# <details>
#
# * Version: 0.5.0
# * GitHub: https://github.com/jthomasmock/gtExtras
# * Source code: https://github.com/cran/gtExtras
# * Date/Publication: 2023-09-15 22:32:06 UTC
# * Number of recursive dependencies: 105
#
# Run `revdepcheck::cloud_details(, "gtExtras")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(gtExtras)
# Loading required package: gt
#
# Attaching package: 'gt'
#
# The following object is masked from 'package:testthat':
# ...
# ══ Failed tests ════════════════════════════════════════════════════════════════
# ── Failure ('test-gt_plt_bar.R:44:3'): gt_plt_bar svg is created and has specific values ──
# `bar_neg_vals` (`actual`) not equal to c("49.19", "32.79", "16.40", "16.40", "32.79", "49.19") (`expected`).
#
# `actual`: "49.19" "32.79" "16.40" "0.00" "0.00" "0.00"
# `expected`: "49.19" "32.79" "16.40" "16.40" "32.79" "49.19"
#
# [ FAIL 1 | WARN 14 | SKIP 23 | PASS 115 ]
# Error: Test failures
# Execution halted
# ```
HaploCatcher (patchwork)
healthyR (plotly)
healthyR.ts (plotly)
heatmaply (plotly)
hermiter (patchwork)
hesim (missing labels)
hidecan (ggnewscale)
HVT (plotly)
hypsoLoop (namespace conflict)
ICvectorfields (ggnewscale)
idopNetwork (patchwork)
inferCSN (plotly)
insurancerating (patchwork)
inTextSummaryTable (default access)
inventorize (unknown)
# <details>
#
# * Version: 1.1.1
# * GitHub: NA
# * Source code: https://github.com/cran/inventorize
# * Date/Publication: 2022-05-31 22:20:09 UTC
# * Number of recursive dependencies: 71
#
# Run `revdepcheck::cloud_details(, "inventorize")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking whether package ‘inventorize’ can be installed ... ERROR
# ```
# Installation failed.
# See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details.
# ```
#
# ## Installation
#
# ### Devel
#
# ```
# * installing *source* package ‘inventorize’ ...
# ** package ‘inventorize’ successfully unpacked and MD5 sums checked
# ** using staged installation
# ** R
# ** byte-compile and prepare package for lazy loading
# Error in pm[[2]] : subscript out of bounds
# Error: unable to load R code in package ‘inventorize’
# Execution halted
# ERROR: lazy loading failed for package ‘inventorize’
# * removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’
#
#
# ```
# ### CRAN
#
# ```
# * installing *source* package ‘inventorize’ ...
# ** package ‘inventorize’ successfully unpacked and MD5 sums checked
# ** using staged installation
# ** R
# ** byte-compile and prepare package for lazy loading
# Warning in qgamma(service_level, alpha, beta) : NaNs produced
# Warning in qgamma(service_level, alpha, beta) : NaNs produced
# ** help
# *** installing help indices
# ** building package indices
# ** testing if installed package can be loaded from temporary location
# ** testing if installed package can be loaded from final location
# ** testing if installed package keeps a record of temporary installation path
# * DONE (inventorize)
#
#
# ```
karel (gganimate)
kDGLM (plotly)
latentcor (plotly)
lcars (device issue)
lemon (resolve theme)
lfproQC (plotly)
LMoFit (saved to disk)
manydata (plot slots)
MARVEL (ggnewscale)
MBNMAdose (cannot reproduce)
MBNMAtime (ggdist)
MetaNet (ggnewscale)
metR (fixed in dev)
migraph (missing labels)
MiMIR (plotly)
miRetrieve (plotly)
misspi (plotly)
mizer (cannot reproduce)
mlr3spatiotempcv (patchwork)
mlr3viz (patchwork)
modeltime.resample (plotly)
move (false positive)
mtb (missing labels)
neatmaps (plotly)
NetFACS (false positive)
NeuralSens (ggnewscale)
NHSRplotthedots (missing labels)
NIMAA (plotly)
OBIC (patchwork)
OmicNavigator (plotly)
oncomsm (patchwork)
pafr (missing labels)
patchwork (patchwork)
pathviewr (missing labels)
pcutils (patchwork)
pdxTrees (gganimate)
personalized (plotly)
phylepic (ggnewscale)
Plasmidprofiler (plotly)
platetools (faulty tests)
plotDK (missing labels)
plotly (plotly)
pmartR (unknown)
# <details>
#
# * Version: 2.4.5
# * GitHub: https://github.com/pmartR/pmartR
# * Source code: https://github.com/cran/pmartR
# * Date/Publication: 2024-05-21 15:50:02 UTC
# * Number of recursive dependencies: 149
#
# Run `revdepcheck::cloud_details(, "pmartR")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(pmartR)
# >
# > test_check("pmartR")
# [ FAIL 1 | WARN 1 | SKIP 11 | PASS 2375 ]
#
# ══ Skipped tests (11) ══════════════════════════════════════════════════════════
# ...
# • plots/plot-spansres-color-high-color-low.svg
# • plots/plot-spansres.svg
# • plots/plot-statres-anova-volcano.svg
# • plots/plot-statres-anova.svg
# • plots/plot-statres-combined-volcano.svg
# • plots/plot-statres-combined.svg
# • plots/plot-statres-gtest.svg
# • plots/plot-totalcountfilt.svg
# Error: Test failures
# Execution halted
# ```
#
# ## In both
#
# * checking installed package size ... NOTE
# ```
# installed size is 10.4Mb
# sub-directories of 1Mb or more:
# R 1.5Mb
# help 1.5Mb
# libs 6.3Mb
# ```
pmxTools (ggdist)
posterior (ggdist)
PPQplan (plotly)
ppseq (plotly)
precrec (patchwork)
priorsense (ggdist)
ProAE (ggnewscale)
probably (missing labels)
processmapR (plotly)
psborrow (missing labels)
r2dii.plot (missing labels)
Radviz (accessing defaults)
rassta (plotly)
REddyProc (false positive)
redist (patchwork)
reReg (length 0 width)
reservr (patchwork)
rKOMICS (unknown)
# <details>
#
# * Version: 1.3
# * GitHub: NA
# * Source code: https://github.com/cran/rKOMICS
# * Date/Publication: 2023-06-29 22:40:03 UTC
# * Number of recursive dependencies: 128
#
# Run `revdepcheck::cloud_details(, "rKOMICS")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘rKOMICS-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: msc.pca
# > ### Title: Prinicple Component Analysis based on MSC
# > ### Aliases: msc.pca
# >
# > ### ** Examples
# >
# > data(matrices)
# ...
# 11. │ └─base::withCallingHandlers(...)
# 12. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
# 13. └─l$compute_geom_2(d, theme = plot$theme)
# 14. └─ggplot2 (local) compute_geom_2(..., self = self)
# 15. └─self$geom$use_defaults(...)
# 16. └─ggplot2 (local) use_defaults(..., self = self)
# 17. └─ggplot2:::check_aesthetics(new_params, nrow(data))
# 18. └─cli::cli_abort(...)
# 19. └─rlang::abort(...)
# Execution halted
# ```
#
# ## In both
#
# * checking installed package size ... NOTE
# ```
# installed size is 24.8Mb
# sub-directories of 1Mb or more:
# extdata 24.0Mb
# ```
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘example.Rnw’ using Sweave
# Loading required package: viridisLite
# Warning: Removed 95 rows containing non-finite outside the scale range
# (`stat_boxplot()`).
# Warning: Removed 89 rows containing non-finite outside the scale range
# (`stat_boxplot()`).
# Warning: Removed 149 rows containing non-finite outside the scale range
# (`stat_boxplot()`).
# Warning: Removed 286 rows containing non-finite outside the scale range
# ...
# l.5 \usepackage
# {xcolor}^^M
# ! ==> Fatal error occurred, no output PDF file produced!
# --- failed re-building ‘example.Rnw’
#
# SUMMARY: processing the following file failed:
# ‘example.Rnw’
#
# Error: Vignette re-building failed.
# Execution halted
# ```
RKorAPClient (missing labels)
RNAseqQC (patchwork)
roahd (plotly)
romic (plotly)
roptions (plotly)
santaR (plot slots)
scdtb (missing labels)
scoringutils (ggdist)
scUtils (missing labels)
SCVA (plotly)
SDMtune (missing labels)
SeaVal (plotly)
sgsR (missing labels)
SHAPforxgboost (ggforce)
SHELF (unknown)
# <details>
#
# * Version: 1.10.0
# * GitHub: https://github.com/OakleyJ/SHELF
# * Source code: https://github.com/cran/SHELF
# * Date/Publication: 2024-05-07 14:20:03 UTC
# * Number of recursive dependencies: 126
#
# Run `revdepcheck::cloud_details(, "SHELF")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘Dirichlet-elicitation.Rmd’ using rmarkdown
# ```
shinipsum (plot slots)
SimNPH (missing labels)
smallsets (patchwork)
spbal (empty sf)
spinifex (plotly)
sport (missing labels)
SqueakR (false positive)
statgenGWAS (device issue)
surveyexplorer (ggupset)
Sysrecon (patchwork)
tabledown (plotly)
TCIU (plotly)
tensorEVD (ggnewscale)
thematic (thematic)
tidybayes (ggdist)
tidycat (ggforce)
tidyCDISC (plotly)
tidydr (uses internals)
tidysdm (patchwork)
tidytreatment (ggdist)
timetk (plotly)
tinyarray (patchwork)
tornado (length 0 width)
TOSTER (ggdist)
TreatmentPatterns (plotly)
trelliscopejs (plotly)
tricolore (ggtern)
triptych (patchwork)
tsnet (ggdist)
umiAnalyzer (plotly)
valr (missing labels)
vivaldi (plotly)
vivid (ggnewscale)
vvshiny (plotly)
wilson (plotly)
xaringanthemer (default access)
yamlet (missing labels)
hadley/ggplot2 documentation built on Sept. 8, 2024, 1:48 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
activAnalyzer (patchwork)
actxps (thematic)
AeRobiology (unknown)
# <details>
#
# * Version: 2.0.1
# * GitHub: NA
# * Source code: https://github.com/cran/AeRobiology
# * Date/Publication: 2019-06-03 06:20:03 UTC
# * Number of recursive dependencies: 98
#
# Run `revdepcheck::cloud_details(, "AeRobiology")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘my-vignette.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘my-vignette.Rmd’
# ...
# + export.plot = FALSE, export.result = FALSE, n.types = 3,
# + y.start = 2011, y.end = .... [TRUNCATED]
#
# > iplot_abundance(munich_pollen, interpolation = FALSE,
# + export.plot = FALSE, export.result = FALSE, n.types = 3,
# + y.start = 2011, y.end = .... [TRUNCATED]
#
# When sourcing ‘my-vignette.R’:
# Error: subscript out of bounds
# Execution halted
#
# ‘my-vignette.Rmd’ using ‘UTF-8’... failed
# ```
agricolaeplotr (missing labels)
AnalysisLin (plotly)
animbook (plotly)
ANN2 (missing labels)
aplot (patchwork)
applicable (missing labels)
ASRgenomics (factoextra)
autoplotly (plotly)
autoReg (patchwork)
bartMan (ggnewscale)
bayesAB (missing labels)
BayesGrowth (ggdist)
BayesianReasoning (missing labels)
BayesMallows (missing labels)
bayesplot (missing labels)
bayestestR (patchwork)
beastt (ggdist)
besthr (patchwork)
biclustermd (xintercept/yintercept class)
biodosetools (missing labels)
boxly (plotly)
braidReports (annotation_logticks)
breathtestcore (plot slots)
brolgar (facet params: as.table)
cartograflow (plotly)
cartographr (unknown)
# <details>
#
# * Version: 0.2.2
# * GitHub: https://github.com/da-wi/cartographr
# * Source code: https://github.com/cran/cartographr
# * Date/Publication: 2024-06-28 14:50:09 UTC
# * Number of recursive dependencies: 99
#
# Run `revdepcheck::cloud_details(, "cartographr")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > # This file is part of the standard setup for testthat.
# > # It is recommended that you do not modify it.
# > #
# > # Where should you do additional test configuration?
# > # Learn more about the roles of various files in:
# > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
# > # * https://testthat.r-lib.org/articles/special-files.html
# ...
# 21. │ └─base::stop(...)
# 22. └─base::.handleSimpleError(...)
# 23. └─rlang (local) h(simpleError(msg, call))
# 24. └─handlers[[1L]](cnd)
# 25. └─cli::cli_abort(...)
# 26. └─rlang::abort(...)
#
# [ FAIL 1 | WARN 0 | SKIP 0 | PASS 106 ]
# Error: Test failures
# Execution halted
# ```
#
# ## In both
#
# * checking installed package size ... NOTE
# ```
# installed size is 5.3Mb
# sub-directories of 1Mb or more:
# data 3.5Mb
# ```
cats (plotly)
cheem (plotly)
chillR (patchwork)
chronicle (plotly)
circhelp (patchwork)
clifro (missing labels)
clinDataReview (plotly)
clinUtils (plotly)
CohortPlat (plotly)
CoreMicrobiomeR (plotly)
correlationfunnel (plotly)
corrViz (plotly)
countfitteR (missing labels)
covidcast (unknown)
# <details>
#
# * Version: 0.5.2
# * GitHub: https://github.com/cmu-delphi/covidcast
# * Source code: https://github.com/cran/covidcast
# * Date/Publication: 2023-07-12 23:40:06 UTC
# * Number of recursive dependencies: 93
#
# Run `revdepcheck::cloud_details(, "covidcast")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(covidcast)
# We encourage COVIDcast API users to register on our mailing list:
# https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api
# We'll send announcements about new data sources, package updates,
# server maintenance, and new features.
# >
# ...
# • plot/default-county-choropleth.svg
# • plot/default-hrr-choropleth-with-include.svg
# • plot/default-msa-choropleth-with-include.svg
# • plot/default-state-choropleth-with-include.svg
# • plot/default-state-choropleth-with-range.svg
# • plot/state-choropleth-with-no-metadata.svg
# • plot/state-line-graph-with-range.svg
# • plot/state-line-graph-with-stderrs.svg
# Error: Test failures
# Execution halted
# ```
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘plotting-signals.Rmd’
# ...
# > knitr::opts_chunk$set(fig.width = 6, fig.height = 4)
#
# > plot(dv)
#
# When sourcing ‘plotting-signals.R’:
# Error: Problem while setting up geom aesthetics.
# ℹ Error occurred in the 6th layer.
# Caused by error in `$<-.data.frame`:
# ! replacement has 1 row, data has 0
# Execution halted
#
# ‘correlation-utils.Rmd’ using ‘UTF-8’... OK
# ‘covidcast.Rmd’ using ‘UTF-8’... OK
# ‘external-data.Rmd’ using ‘UTF-8’... OK
# ‘multi-signals.Rmd’ using ‘UTF-8’... OK
# ‘plotting-signals.Rmd’ using ‘UTF-8’... failed
# ```
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘correlation-utils.Rmd’ using rmarkdown
# --- finished re-building ‘correlation-utils.Rmd’
#
# --- re-building ‘covidcast.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking data for non-ASCII characters ... NOTE
# ```
# Note: found 20 marked UTF-8 strings
# ```
crosshap (plotly)
cubble (patchwork)
deeptime (ggnewscale)
distributional (ggdist)
dittoViz (plotly)
EGM (missing labels)
entropart (default access)
epiCleanr (ggdist)
esci (ggdist)
evalITR (unknown)
# <details>
#
# * Version: 1.0.0
# * GitHub: https://github.com/MichaelLLi/evalITR
# * Source code: https://github.com/cran/evalITR
# * Date/Publication: 2023-08-25 23:10:06 UTC
# * Number of recursive dependencies: 167
#
# Run `revdepcheck::cloud_details(, "evalITR")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘cv_multiple_alg.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘cv_multiple_alg.Rmd’
# ...
# intersect, setdiff, setequal, union
#
#
# > load("../data/star.rda")
# Warning in readChar(con, 5L, useBytes = TRUE) :
# cannot open compressed file '../data/star.rda', probable reason 'No such file or directory'
#
# ...
# Execution halted
#
# ‘cv_multiple_alg.Rmd’ using ‘UTF-8’... failed
# ‘cv_single_alg.Rmd’ using ‘UTF-8’... failed
# ‘install.Rmd’ using ‘UTF-8’... OK
# ‘paper_alg1.Rmd’ using ‘UTF-8’... OK
# ‘sample_split.Rmd’ using ‘UTF-8’... failed
# ‘sample_split_caret.Rmd’ using ‘UTF-8’... failed
# ‘user_itr.Rmd’ using ‘UTF-8’... failed
# ‘user_itr_algs.Rmd’ using ‘UTF-8’... failed
# ```
#
# * checking dependencies in R code ... NOTE
# ```
# Namespaces in Imports field not imported from:
# ‘forcats’ ‘rqPen’ ‘utils’
# All declared Imports should be used.
# ```
eventstudyr (missing labels)
EvoPhylo (patchwork)
expirest (missing labels)
explainer (plotly)
ezEDA (missing labels)
ezplot (0-length width)
fable.prophet (ggdist)
fabletools (ggdist)
factoextra (0-length width)
fairmodels (missing labels)
fddm (ggforce)
feasts (missing labels)
ffp (ggdist)
fido (ggdist)
flipr (unknown)
# <details>
#
# * Version: 0.3.3
# * GitHub: https://github.com/LMJL-Alea/flipr
# * Source code: https://github.com/cran/flipr
# * Date/Publication: 2023-08-23 09:00:02 UTC
# * Number of recursive dependencies: 106
#
# Run `revdepcheck::cloud_details(, "flipr")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘alternative.Rmd’ using rmarkdown
# --- finished re-building ‘alternative.Rmd’
#
# --- re-building ‘exactness.Rmd’ using rmarkdown
#
# Quitting from lines 142-177 [unnamed-chunk-1] (exactness.Rmd)
# Error: processing vignette 'exactness.Rmd' failed with diagnostics:
# subscript out of bounds
# --- failed re-building ‘exactness.Rmd’
#
# --- re-building ‘flipr.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘exactness.Rmd’
# ...
#
# > library(flipr)
#
# > load("../R/sysdata.rda")
# Warning in readChar(con, 5L, useBytes = TRUE) :
# cannot open compressed file '../R/sysdata.rda', probable reason 'No such file or directory'
#
# ...
# cannot open compressed file '../R/sysdata.rda', probable reason 'No such file or directory'
#
# When sourcing ‘plausibility.R’:
# Error: cannot open the connection
# Execution halted
#
# ‘alternative.Rmd’ using ‘UTF-8’... OK
# ‘exactness.Rmd’ using ‘UTF-8’... failed
# ‘flipr.Rmd’ using ‘UTF-8’... failed
# ‘plausibility.Rmd’ using ‘UTF-8’... failed
# ```
#
# * checking installed package size ... NOTE
# ```
# installed size is 11.0Mb
# sub-directories of 1Mb or more:
# doc 9.1Mb
# libs 1.2Mb
# ```
foqat (ggnewscale)
forestly (patchwork)
frailtyEM (plotly)
funcharts (patchwork)
geomtextpath (default access)
GGally (missing labels)
gganimate (gganimate)
ggbrain (ggnewscale)
ggbreak (patchwork)
ggdark (default access)
ggdist (ggdist)
ggDoubleHeat (ggnewscale)
ggeasy (missing labels)
ggedit (saved to disk)
ggESDA (passing NULL aesthetic mapping)
ggfixest (visual differences)
ggforce (ggforce)
Note: facet_zoom/facet_col/facet_row
ggformula (docs)
ggfortify (tests)
gggenomes (patchwork)
ggh4x (unknown)
# <details>
#
# * Version: 0.2.8
# * GitHub: https://github.com/teunbrand/ggh4x
# * Source code: https://github.com/cran/ggh4x
# * Date/Publication: 2024-01-23 21:00:02 UTC
# * Number of recursive dependencies: 77
#
# Run `revdepcheck::cloud_details(, "ggh4x")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘ggh4x-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: guide_stringlegend
# > ### Title: String legend
# > ### Aliases: guide_stringlegend
# >
# > ### ** Examples
# >
# > p <- ggplot(mpg, aes(displ, hwy)) +
# + geom_point(aes(colour = manufacturer))
# >
# > # String legend can be set in the `guides()` function
# > p + guides(colour = guide_stringlegend(ncol = 2))
# Error in (function (layer, df) :
# argument "theme" is missing, with no default
# Calls: <Anonymous> ... use_defaults -> eval_from_theme -> %||% -> calc_element
# Execution halted
# ```
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(ggh4x)
# Loading required package: ggplot2
# >
# > test_check("ggh4x")
# [ FAIL 2 | WARN 20 | SKIP 18 | PASS 753 ]
#
# ...
# 25. └─ggplot2 (local) compute_geom_2(..., self = self)
# 26. └─self$geom$use_defaults(...)
# 27. └─ggplot2 (local) use_defaults(..., self = self)
# 28. └─ggplot2:::eval_from_theme(default_aes, theme)
# 29. ├─calc_element("geom", theme) %||% .default_geom_element
# 30. └─ggplot2::calc_element("geom", theme)
#
# [ FAIL 2 | WARN 20 | SKIP 18 | PASS 753 ]
# Error: Test failures
# Execution halted
# ```
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘Facets.Rmd’ using rmarkdown
# ```
#
# ## In both
#
# * checking running R code from vignettes ... ERROR
# ```
# Errors in running code in vignettes:
# when running code in ‘Miscellaneous.Rmd’
# ...
#
# > ggplot(diamonds, aes(price, carat, colour = clarity)) +
# + geom_point(shape = ".") + scale_colour_brewer(palette = "Dark2",
# + guide = "stri ..." ... [TRUNCATED]
# Warning: The S3 guide system was deprecated in ggplot2 3.5.0.
# ℹ It has been replaced by a ggproto system that can be extended.
#
# ...
# ℹ Error occurred in the 1st layer.
# Caused by error in `setup_params()`:
# ! A discrete 'nbinom' distribution cannot be fitted to continuous data.
# Execution halted
#
# ‘Facets.Rmd’ using ‘UTF-8’... OK
# ‘Miscellaneous.Rmd’ using ‘UTF-8’... failed
# ‘PositionGuides.Rmd’ using ‘UTF-8’... OK
# ‘Statistics.Rmd’ using ‘UTF-8’... failed
# ‘ggh4x.Rmd’ using ‘UTF-8’... OK
# ```
gghighlight (default access)
ggHoriPlot (patchwork)
ggiraph (additional params)
ggiraphExtra (additional params)
ggmice (plotly)
ggmulti (custom use_defaults)
ggnewscale (ggnewscale)
ggparallel (unknown)
# <details>
#
# * Version: 0.4.0
# * GitHub: https://github.com/heike/ggparallel
# * Source code: https://github.com/cran/ggparallel
# * Date/Publication: 2024-03-09 22:00:02 UTC
# * Number of recursive dependencies: 51
#
# Run `revdepcheck::cloud_details(, "ggparallel")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > # This file is part of the standard setup for testthat.
# > # It is recommended that you do not modify it.
# > #
# > # Where should you do additional test configuration?
# > # Learn more about the roles of various files in:
# > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
# > # * https://testthat.r-lib.org/articles/special-files.html
# ...
# 12. └─self$get_layer_key(params, layers[include], data[include], theme)
# 13. └─ggplot2 (local) get_layer_key(...)
# 14. └─base::Map(...)
# 15. └─base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
# 16. └─ggplot2 (local) `<fn>`(layer = dots[[1L]][[1L]], df = dots[[2L]][[1L]])
# 17. └─layer$compute_geom_2(key, single_params, theme)
#
# [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
# Error: Test failures
# Execution halted
# ```
ggpicrust2 (patchwork)
ggpie (ggnewscale)
ggplotlyExtra (plotly)
ggpol (default access)
ggpubr (update tests)
ggraph (guide theme passing)
ggredist (unknown)
# <details>
#
# * Version: 0.0.2
# * GitHub: https://github.com/alarm-redist/ggredist
# * Source code: https://github.com/cran/ggredist
# * Date/Publication: 2022-11-23 11:20:02 UTC
# * Number of recursive dependencies: 67
#
# Run `revdepcheck::cloud_details(, "ggredist")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘ggredist-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: geom_district_text
# > ### Title: Label Map Regions
# > ### Aliases: geom_district_text geom_district_label
# > ### stat_district_coordinates StatDistrictCoordinates GeomDistrictText
# > ### Keywords: datasets
# >
# > ### ** Examples
# ...
# 22. │ └─coord$transform(data, panel_params)
# 23. │ └─ggplot2 (local) transform(..., self = self)
# 24. │ └─ggplot2:::sf_rescale01(...)
# 25. │ └─sf::st_normalize(x, c(x_range[1], y_range[1], x_range[2], y_range[2]))
# 26. └─base::.handleSimpleError(...)
# 27. └─rlang (local) h(simpleError(msg, call))
# 28. └─handlers[[1L]](cnd)
# 29. └─cli::cli_abort(...)
# 30. └─rlang::abort(...)
# Execution halted
# ```
ggRtsy (missing labels)
ggseqplot (length 0 width)
ggside (unknown)
# <details>
#
# * Version: 0.3.1
# * GitHub: https://github.com/jtlandis/ggside
# * Source code: https://github.com/cran/ggside
# * Date/Publication: 2024-03-01 09:12:37 UTC
# * Number of recursive dependencies: 76
#
# Run `revdepcheck::cloud_details(, "ggside")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(ggplot2)
# > library(ggside)
# Registered S3 method overwritten by 'ggside':
# method from
# +.gg ggplot2
# >
# ...
# • ops_meaningful/alpha-0-5-from-function.svg
# • side_layers/boxplot2.svg
# • vdiff_irisScatter/collapsed-histo.svg
# • vdiff_irisScatter/facetgrid-collapsed-density.svg
# • vdiff_irisScatter/facetgrid-histo.svg
# • vdiff_irisScatter/facetgrid-side-density.svg
# • vdiff_irisScatter/stacked-side-density.svg
# • vdiff_irisScatter/yside-histo.svg
# Error: Test failures
# Execution halted
# ```
#
# * checking for code/documentation mismatches ... WARNING
# ```
# Codoc mismatches from documentation object 'geom_xsideabline':
# geom_xsidehline
# Code: function(mapping = NULL, data = NULL, position = "identity",
# ..., yintercept, na.rm = FALSE, show.legend = NA)
# Docs: function(mapping = NULL, data = NULL, ..., yintercept, na.rm =
# FALSE, show.legend = NA)
# Argument names in code not in docs:
# position
# Mismatches in argument names (first 3):
# Position: 3 Code: position Docs: ...
# ...
# Docs: function(mapping = NULL, data = NULL, stat = "identity",
# position = "identity", ..., lineend = "butt", linejoin
# = "round", linemitre = 10, arrow = NULL, na.rm =
# FALSE, show.legend = NA, inherit.aes = TRUE)
# Argument names in code not in docs:
# arrow.fill
# Mismatches in argument names:
# Position: 10 Code: arrow.fill Docs: na.rm
# Position: 11 Code: na.rm Docs: show.legend
# Position: 12 Code: show.legend Docs: inherit.aes
# ```
ggspatial (missing defaults)
ggtern (ggtern)
ggupset (unknown)
# <details>
#
# * Version: 0.4.0
# * GitHub: https://github.com/const-ae/ggupset
# * Source code: https://github.com/cran/ggupset
# * Date/Publication: 2024-06-24 10:10:04 UTC
# * Number of recursive dependencies: 46
#
# Run `revdepcheck::cloud_details(, "ggupset")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘ggupset-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: axis_combmatrix
# > ### Title: Convert delimited text labels into a combination matrix axis
# > ### Aliases: axis_combmatrix
# >
# > ### ** Examples
# >
# > library(ggplot2)
# ...
# Datsun 710 Cyl: 4_Gears: 4
# Hornet 4 Drive Cyl: 6_Gears: 3
# Hornet Sportabout Cyl: 8_Gears: 3
# Valiant Cyl: 6_Gears: 3
# > ggplot(mtcars, aes(x=combined)) +
# + geom_bar() +
# + axis_combmatrix(sep = "_")
# Error in as.unit(e2) : object is not coercible to a unit
# Calls: <Anonymous> ... polylineGrob -> is.unit -> unit.c -> Ops.unit -> as.unit
# Execution halted
# ```
ggVennDiagram (plotly)
greatR (patchwork)
Greymodels (plotly)
gtExtras (unknown)
# <details>
#
# * Version: 0.5.0
# * GitHub: https://github.com/jthomasmock/gtExtras
# * Source code: https://github.com/cran/gtExtras
# * Date/Publication: 2023-09-15 22:32:06 UTC
# * Number of recursive dependencies: 105
#
# Run `revdepcheck::cloud_details(, "gtExtras")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(gtExtras)
# Loading required package: gt
#
# Attaching package: 'gt'
#
# The following object is masked from 'package:testthat':
# ...
# ══ Failed tests ════════════════════════════════════════════════════════════════
# ── Failure ('test-gt_plt_bar.R:44:3'): gt_plt_bar svg is created and has specific values ──
# `bar_neg_vals` (`actual`) not equal to c("49.19", "32.79", "16.40", "16.40", "32.79", "49.19") (`expected`).
#
# `actual`: "49.19" "32.79" "16.40" "0.00" "0.00" "0.00"
# `expected`: "49.19" "32.79" "16.40" "16.40" "32.79" "49.19"
#
# [ FAIL 1 | WARN 14 | SKIP 23 | PASS 115 ]
# Error: Test failures
# Execution halted
# ```
HaploCatcher (patchwork)
healthyR (plotly)
healthyR.ts (plotly)
heatmaply (plotly)
hermiter (patchwork)
hesim (missing labels)
hidecan (ggnewscale)
HVT (plotly)
hypsoLoop (namespace conflict)
ICvectorfields (ggnewscale)
idopNetwork (patchwork)
inferCSN (plotly)
insurancerating (patchwork)
inTextSummaryTable (default access)
inventorize (unknown)
# <details>
#
# * Version: 1.1.1
# * GitHub: NA
# * Source code: https://github.com/cran/inventorize
# * Date/Publication: 2022-05-31 22:20:09 UTC
# * Number of recursive dependencies: 71
#
# Run `revdepcheck::cloud_details(, "inventorize")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking whether package ‘inventorize’ can be installed ... ERROR
# ```
# Installation failed.
# See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details.
# ```
#
# ## Installation
#
# ### Devel
#
# ```
# * installing *source* package ‘inventorize’ ...
# ** package ‘inventorize’ successfully unpacked and MD5 sums checked
# ** using staged installation
# ** R
# ** byte-compile and prepare package for lazy loading
# Error in pm[[2]] : subscript out of bounds
# Error: unable to load R code in package ‘inventorize’
# Execution halted
# ERROR: lazy loading failed for package ‘inventorize’
# * removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’
#
#
# ```
# ### CRAN
#
# ```
# * installing *source* package ‘inventorize’ ...
# ** package ‘inventorize’ successfully unpacked and MD5 sums checked
# ** using staged installation
# ** R
# ** byte-compile and prepare package for lazy loading
# Warning in qgamma(service_level, alpha, beta) : NaNs produced
# Warning in qgamma(service_level, alpha, beta) : NaNs produced
# ** help
# *** installing help indices
# ** building package indices
# ** testing if installed package can be loaded from temporary location
# ** testing if installed package can be loaded from final location
# ** testing if installed package keeps a record of temporary installation path
# * DONE (inventorize)
#
#
# ```
karel (gganimate)
kDGLM (plotly)
latentcor (plotly)
lcars (device issue)
lemon (resolve theme)
lfproQC (plotly)
LMoFit (saved to disk)
manydata (plot slots)
MARVEL (ggnewscale)
MBNMAdose (cannot reproduce)
MBNMAtime (ggdist)
MetaNet (ggnewscale)
metR (fixed in dev)
migraph (missing labels)
MiMIR (plotly)
miRetrieve (plotly)
misspi (plotly)
mizer (cannot reproduce)
mlr3spatiotempcv (patchwork)
mlr3viz (patchwork)
modeltime.resample (plotly)
move (false positive)
mtb (missing labels)
neatmaps (plotly)
NetFACS (false positive)
NeuralSens (ggnewscale)
NHSRplotthedots (missing labels)
NIMAA (plotly)
OBIC (patchwork)
OmicNavigator (plotly)
oncomsm (patchwork)
pafr (missing labels)
patchwork (patchwork)
pathviewr (missing labels)
pcutils (patchwork)
pdxTrees (gganimate)
personalized (plotly)
phylepic (ggnewscale)
Plasmidprofiler (plotly)
platetools (faulty tests)
plotDK (missing labels)
plotly (plotly)
pmartR (unknown)
# <details>
#
# * Version: 2.4.5
# * GitHub: https://github.com/pmartR/pmartR
# * Source code: https://github.com/cran/pmartR
# * Date/Publication: 2024-05-21 15:50:02 UTC
# * Number of recursive dependencies: 149
#
# Run `revdepcheck::cloud_details(, "pmartR")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking tests ... ERROR
# ```
# Running ‘testthat.R’
# Running the tests in ‘tests/testthat.R’ failed.
# Complete output:
# > library(testthat)
# > library(pmartR)
# >
# > test_check("pmartR")
# [ FAIL 1 | WARN 1 | SKIP 11 | PASS 2375 ]
#
# ══ Skipped tests (11) ══════════════════════════════════════════════════════════
# ...
# • plots/plot-spansres-color-high-color-low.svg
# • plots/plot-spansres.svg
# • plots/plot-statres-anova-volcano.svg
# • plots/plot-statres-anova.svg
# • plots/plot-statres-combined-volcano.svg
# • plots/plot-statres-combined.svg
# • plots/plot-statres-gtest.svg
# • plots/plot-totalcountfilt.svg
# Error: Test failures
# Execution halted
# ```
#
# ## In both
#
# * checking installed package size ... NOTE
# ```
# installed size is 10.4Mb
# sub-directories of 1Mb or more:
# R 1.5Mb
# help 1.5Mb
# libs 6.3Mb
# ```
pmxTools (ggdist)
posterior (ggdist)
PPQplan (plotly)
ppseq (plotly)
precrec (patchwork)
priorsense (ggdist)
ProAE (ggnewscale)
probably (missing labels)
processmapR (plotly)
psborrow (missing labels)
r2dii.plot (missing labels)
Radviz (accessing defaults)
rassta (plotly)
REddyProc (false positive)
redist (patchwork)
reReg (length 0 width)
reservr (patchwork)
rKOMICS (unknown)
# <details>
#
# * Version: 1.3
# * GitHub: NA
# * Source code: https://github.com/cran/rKOMICS
# * Date/Publication: 2023-06-29 22:40:03 UTC
# * Number of recursive dependencies: 128
#
# Run `revdepcheck::cloud_details(, "rKOMICS")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking examples ... ERROR
# ```
# Running examples in ‘rKOMICS-Ex.R’ failed
# The error most likely occurred in:
#
# > ### Name: msc.pca
# > ### Title: Prinicple Component Analysis based on MSC
# > ### Aliases: msc.pca
# >
# > ### ** Examples
# >
# > data(matrices)
# ...
# 11. │ └─base::withCallingHandlers(...)
# 12. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
# 13. └─l$compute_geom_2(d, theme = plot$theme)
# 14. └─ggplot2 (local) compute_geom_2(..., self = self)
# 15. └─self$geom$use_defaults(...)
# 16. └─ggplot2 (local) use_defaults(..., self = self)
# 17. └─ggplot2:::check_aesthetics(new_params, nrow(data))
# 18. └─cli::cli_abort(...)
# 19. └─rlang::abort(...)
# Execution halted
# ```
#
# ## In both
#
# * checking installed package size ... NOTE
# ```
# installed size is 24.8Mb
# sub-directories of 1Mb or more:
# extdata 24.0Mb
# ```
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘example.Rnw’ using Sweave
# Loading required package: viridisLite
# Warning: Removed 95 rows containing non-finite outside the scale range
# (`stat_boxplot()`).
# Warning: Removed 89 rows containing non-finite outside the scale range
# (`stat_boxplot()`).
# Warning: Removed 149 rows containing non-finite outside the scale range
# (`stat_boxplot()`).
# Warning: Removed 286 rows containing non-finite outside the scale range
# ...
# l.5 \usepackage
# {xcolor}^^M
# ! ==> Fatal error occurred, no output PDF file produced!
# --- failed re-building ‘example.Rnw’
#
# SUMMARY: processing the following file failed:
# ‘example.Rnw’
#
# Error: Vignette re-building failed.
# Execution halted
# ```
RKorAPClient (missing labels)
RNAseqQC (patchwork)
roahd (plotly)
romic (plotly)
roptions (plotly)
santaR (plot slots)
scdtb (missing labels)
scoringutils (ggdist)
scUtils (missing labels)
SCVA (plotly)
SDMtune (missing labels)
SeaVal (plotly)
sgsR (missing labels)
SHAPforxgboost (ggforce)
SHELF (unknown)
# <details>
#
# * Version: 1.10.0
# * GitHub: https://github.com/OakleyJ/SHELF
# * Source code: https://github.com/cran/SHELF
# * Date/Publication: 2024-05-07 14:20:03 UTC
# * Number of recursive dependencies: 126
#
# Run `revdepcheck::cloud_details(, "SHELF")` for more info
#
# </details>
#
# ## Newly broken
#
# * checking re-building of vignette outputs ... NOTE
# ```
# Error(s) in re-building vignettes:
# --- re-building ‘Dirichlet-elicitation.Rmd’ using rmarkdown
# ```
shinipsum (plot slots)
SimNPH (missing labels)
smallsets (patchwork)
spbal (empty sf)
spinifex (plotly)
sport (missing labels)
SqueakR (false positive)
statgenGWAS (device issue)
surveyexplorer (ggupset)
Sysrecon (patchwork)
tabledown (plotly)
TCIU (plotly)
tensorEVD (ggnewscale)
thematic (thematic)
tidybayes (ggdist)
tidycat (ggforce)
tidyCDISC (plotly)
tidydr (uses internals)
tidysdm (patchwork)
tidytreatment (ggdist)
timetk (plotly)
tinyarray (patchwork)
tornado (length 0 width)
TOSTER (ggdist)
TreatmentPatterns (plotly)
trelliscopejs (plotly)
tricolore (ggtern)
triptych (patchwork)
tsnet (ggdist)
umiAnalyzer (plotly)
valr (missing labels)
vivaldi (plotly)
vivid (ggnewscale)
vvshiny (plotly)
wilson (plotly)
xaringanthemer (default access)
yamlet (missing labels)
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