revdep/problems.md
In hadley/ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics
activAnalyzer
- Version: 2.1.2
- GitHub: https://github.com/pydemull/activAnalyzer
- Source code: https://github.com/cran/activAnalyzer
- Date/Publication: 2024-09-23 23:40:02 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "activAnalyzer") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘activAnalyzer.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
R 1.5Mb
doc 1.0Mb
extdata 2.0Mb
actxps
- Version: 1.6.0
- GitHub: https://github.com/mattheaphy/actxps
- Source code: https://github.com/cran/actxps
- Date/Publication: 2025-01-07 13:00:02 UTC
- Number of recursive dependencies: 129
Run revdepcheck::cloud_details(, "actxps") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘actxps.Rmd’ using rmarkdown
Quitting from actxps.Rmd:10-18 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in get():
! object 'ggplot_build.ggplot' not found
Backtrace:
...
Error: processing vignette 'transactions.Rmd' failed with diagnostics:
object 'ggplot_build.ggplot' not found
--- failed re-building ‘transactions.Rmd’
SUMMARY: processing the following files failed:
‘actxps.Rmd’ ‘misc.Rmd’ ‘transactions.Rmd’
Error: Vignette re-building failed.
Execution halted
```
adklakedata
- Version: 0.6.1
- GitHub: https://github.com/lawinslow/adklakedata
- Source code: https://github.com/cran/adklakedata
- Date/Publication: 2018-02-16 19:08:16 UTC
- Number of recursive dependencies: 61
Run revdepcheck::cloud_details(, "adklakedata") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘adklakedata-Ex.R’ failed
The error most likely occurred in:
Name: adk_lake_shapes
Title: Return path to Lake Polygons Shapefile
Aliases: adk_lake_shapes
** Examples
library(sf)
Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE
bl = read_sf(adklakedata::adk_shape())
Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
package tibble not available: install first?
Calls: read_sf ... st_read -> st_read.character -> process_cpl_read_ogr
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
adsoRptionCMF
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/adsoRptionCMF
- Date/Publication: 2025-06-05 10:00:05 UTC
- Number of recursive dependencies: 46
Run revdepcheck::cloud_details(, "adsoRptionCMF") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘adsoRptionCMF-Ex.R’ failed
The error most likely occurred in:
Name: fit_freundlichLM
Title: Freundlich Isotherm Linear Analysis
Aliases: fit_freundlichLM
** Examples
Ce <- c(0.01353, 0.04648, 0.13239, 0.27714, 0.41600, 0.63607, 0.80435, 1.10327, 1.58223)
...
17. │ └─l$compute_geom_2(d, theme = plot@theme)
18. │ └─ggplot2 (local) compute_geom_2(..., self = self)
19. │ └─self$geom$use_defaults(...)
20. │ └─ggplot2 (local) use_defaults(..., self = self)
21. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
22. │ └─vctrs::list_sizes(x)
23. └─vctrs:::stop_scalar_type(<fn>(<expression>), "x$label", <env>)
24. └─vctrs:::stop_vctrs(...)
25. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
adw
- Version: 0.4.0
- GitHub: https://github.com/PanfengZhang/adw
- Source code: https://github.com/cran/adw
- Date/Publication: 2024-04-15 19:10:16 UTC
- Number of recursive dependencies: 59
Run revdepcheck::cloud_details(, "adw") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘adw-Ex.R’ failed
The error most likely occurred in:
Name: adw
Title: Angular Distance Weighting Interpolation.
Aliases: adw
** Examples
set.seed(2)
...
4 111.75 31.25 -0.47570806
5 112.25 31.25 -1.57521787
6 112.75 31.25 -1.10541492
example 2
hmap <- cnmap::getMap(code = "410000") |> sf::st_make_valid() # return a 'sf' object.
Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
package tibble not available: install first?
Calls: ... st_read -> st_read.character -> process_cpl_read_ogr
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Introduction.Rmd’ using rmarkdown
Quitting from Introduction.Rmd:47-74 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in process_cpl_read_ogr():
! package tibble not available: install first?
Backtrace:
...
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
package tibble not available: install first?
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
```
AeRobiology
- Version: 2.0.1
- GitHub: NA
- Source code: https://github.com/cran/AeRobiology
- Date/Publication: 2019-06-03 06:20:03 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "AeRobiology") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘my-vignette.Rmd’ using rmarkdown
afex
- Version: 1.4-1
- GitHub: https://github.com/singmann/afex
- Source code: https://github.com/cran/afex
- Date/Publication: 2024-09-01 16:10:02 UTC
- Number of recursive dependencies: 237
Run revdepcheck::cloud_details(, "afex") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown
AgroR
- Version: 1.3.6
- GitHub: NA
- Source code: https://github.com/cran/AgroR
- Date/Publication: 2024-04-24 02:20:18 UTC
- Number of recursive dependencies: 117
Run revdepcheck::cloud_details(, "AgroR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘AgroR-Ex.R’ failed
The error most likely occurred in:
Name: TBARPLOT.reverse
Title: Graph: Reverse graph of DICT, DBCT and DQL output when
geom="bar"
Aliases: TBARPLOT.reverse
Keywords: Experimental
** Examples
...
3 7.822709e-05 0.59104221 0.46541352 0.3244232 4.189412
4 1.496061e-02 0.09984009 0.09849058 0.1332682 6.462590
5 1.757687e-04 0.67552390 0.42726077 0.3008609 2.566743
6 1.138255e-04 0.70461554 0.37578092 0.6357482 2.093636
TBARPLOT.reverse(a)
Warning in geom_text(aes(label = letra, y = media + desvio + sup), position = position_dodge(0.9), :
Ignoring empty aesthetics: size and family.
Error in if (colo == "gray") { : argument is of length zero
Calls: TBARPLOT.reverse
Execution halted
```
AgroReg
- Version: 1.2.10
- GitHub: NA
- Source code: https://github.com/cran/AgroReg
- Date/Publication: 2024-01-16 12:50:16 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "AgroReg") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘AgroReg-Ex.R’ failed
The error most likely occurred in:
Name: adjust_scale
Title: Utils: Adjust y and x scale
Aliases: adjust_scale
** Examples
library(AgroReg)
...
data("aristolochia")
attach(aristolochia)
a=LM(trat,resp)
b=LL(trat,resp,npar = "LL.3")
a=plot_arrange(list(a,b),gray = TRUE)
Error in equation[[i]] <- plots[[i]][[3]]$plot$s :
replacement has length zero
Calls: plot_arrange
Execution halted
```
alookr
- Version: 0.3.9
- GitHub: https://github.com/choonghyunryu/alookr
- Source code: https://github.com/cran/alookr
- Date/Publication: 2024-02-11 07:30:02 UTC
- Number of recursive dependencies: 168
Run revdepcheck::cloud_details(, "alookr") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘alookr-Ex.R’ failed
The error most likely occurred in:
Name: compare_plot
Title: Comparison plot of train set and test set
Aliases: compare_plot
** Examples
library(dplyr)
...
sb %>%
+ compare_plot()
Warning: unite_() was deprecated in tidyr 1.2.0.
ℹ Please use unite() instead.
ℹ The deprecated feature was likely used in the ggmosaic package.
Please report the issue at https://github.com/haleyjeppson/ggmosaic.
Error in make_title(..., self = self) :
unused arguments ("dataset class", "x")
Calls: %>% ... labels -> -> resolve_label ->
Execution halted
```
AnalysisLin
- Version: 0.1.2
- GitHub: NA
- Source code: https://github.com/cran/AnalysisLin
- Date/Publication: 2024-01-30 00:10:10 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "AnalysisLin") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘AnalysisLin-Ex.R’ failed
The error most likely occurred in:
Name: bar_plot
Title: Bar Plots for Categorical Variables
Aliases: bar_plot
** Examples
data(iris)
bar_plot(iris)
Error in pm[[2]] : subscript out of bounds
Calls: bar_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
andurinha
- Version: 0.0.2
- GitHub: https://github.com/noemiallefs/andurinha
- Source code: https://github.com/cran/andurinha
- Date/Publication: 2020-08-13 08:40:02 UTC
- Number of recursive dependencies: 74
Run revdepcheck::cloud_details(, "andurinha") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(andurinha)
>
> test_check("andurinha")
sample absMax
1 A 0.465
2 B 0.402
...
── Failure ('test_funtionsOutput.R:29:3'): plotPeaks return a ggplot objetc ────
class(...) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test_funtionsOutput.R:32:3'): plotPeaks return a ggplot objetc ────
class(...) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 43 ]
Error: Test failures
Execution halted
```
animbook
- Version: 1.0.0
- GitHub: https://github.com/KrisanatA/animbook
- Source code: https://github.com/cran/animbook
- Date/Publication: 2023-12-05 17:50:07 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "animbook") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘animbook-Ex.R’ failed
The error most likely occurred in:
Name: anim_animate
Title: Modified the ggplot object
Aliases: anim_animate
** Examples
animbook <- anim_prep(data = osiris, id = ID, values = sales, time = year, group = japan)
plot <- wallaby_plot(animbook)
You can now use the animbook::anim_animate() function to
transform it into an animated object
animate <- anim_animate(plot)
Error in plot$plot_env : object of type 'object' is not subsettable
Calls: anim_animate
Execution halted
```
ANN2
- Version: 2.3.4
- GitHub: https://github.com/bflammers/ANN2
- Source code: https://github.com/cran/ANN2
- Date/Publication: 2020-12-01 10:00:02 UTC
- Number of recursive dependencies: 48
Run revdepcheck::cloud_details(, "ANN2") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ANN2)
>
> # Only test if not on mac
> if (tolower(Sys.info()[["sysname"]]) != "darwin") {
- test_check("ANN2")
- }
...
── Failure ('test-plotting.R:59:3'): the reconstruction_plot.ANN() function works correctly ──
p_AE$labels$colour not equal to "col".
target is NULL, current is character
── Failure ('test-plotting.R:77:3'): the compression_plot.ANN() function works correctly ──
p_AE$labels$colour not equal to "col".
target is NULL, current is character
[ FAIL 5 | WARN 2 | SKIP 4 | PASS 143 ]
Error: Test failures
Execution halted
```
In both
-
checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
-
checking installed package size ... NOTE
installed size is 48.9Mb
sub-directories of 1Mb or more:
cereal 1.4Mb
libs 47.4Mb
-
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
APackOfTheClones
- Version: 1.2.4
- GitHub: https://github.com/Qile0317/APackOfTheClones
- Source code: https://github.com/cran/APackOfTheClones
- Date/Publication: 2024-11-18 22:30:02 UTC
- Number of recursive dependencies: 174
Run revdepcheck::cloud_details(, "APackOfTheClones") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘APackOfTheClones-Ex.R’ failed
The error most likely occurred in:
Name: APOTCPlot
Title: Various variations of visualizations of clonal expansion
post-RunAPOTC
Aliases: APOTCPlot
** Examples
...
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
combined_pbmc <- RunAPOTC(
+ combined_pbmc, run_id = "run1", verbose = FALSE
+ )
plotting with default arguments will plot the latest "run1"
clonal_packing_plot <- APOTCPlot(combined_pbmc)
```
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
- │ └─vctrs:::stop_names(...)
- │ └─vctrs:::stop_vctrs(...)
- │ └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
- ├─APackOfTheClones:::name_latest_legend_layer(.)
- │ └─plt %>% name_latest_layer(.ApotcLegendLayerName)
- └─APackOfTheClones:::name_latest_layer(., .ApotcLegendLayerName)
[ FAIL 5 | WARN 57 | SKIP 10 | PASS 239 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘APackOfTheClones-install.Rmd’ using rmarkdown
--- finished re-building ‘APackOfTheClones-install.Rmd’
--- re-building ‘APackOfTheClones-runs.Rmd’ using rmarkdown
```
In both
-
checking contents of ‘data’ directory ... WARNING
Output for data("combined_pbmc", package = "APackOfTheClones"):
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
-
checking installed package size ... NOTE
installed size is 7.6Mb
sub-directories of 1Mb or more:
help 1.1Mb
libs 5.3Mb
APCtools
- Version: 1.0.4
- GitHub: https://github.com/bauer-alex/APCtools
- Source code: https://github.com/cran/APCtools
- Date/Publication: 2023-01-13 23:30:02 UTC
- Number of recursive dependencies: 112
Run revdepcheck::cloud_details(, "APCtools") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘APCtools-Ex.R’ failed
The error most likely occurred in:
Name: plot_densityMatrix
Title: Create a matrix of density plots
Aliases: plot_densityMatrix
** Examples
library(APCtools)
...
2.2.0 and is now defunct.
ℹ Please use the rows argument instead.
Backtrace:
▆
1. └─APCtools::plot_densityMatrix(...)
2. └─ggplot2::facet_grid(facets = facet_formula, switch = "y")
3. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)")
4. └─lifecycle:::deprecate_stop0(msg)
5. └─rlang::cnd_signal(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(APCtools)
>
> test_check("APCtools")
Loading required package: nlme
This is mgcv 1.9-1. For overview type 'help("mgcv-package")'.
Excluding 9565 missing observations of mainTrip_distance...
...
▆
- └─APCtools::plot_densityMatrix(...) at test-plots_descriptive.R:148:3
- └─ggplot2::facet_grid(facets = facet_formula, switch = "y")
- └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)")
- └─lifecycle:::deprecate_stop0(msg)
- └─rlang::cnd_signal(...)
[ FAIL 2 | WARN 51 | SKIP 0 | PASS 84 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘main_functionality.Rmd’ using rmarkdown
aplot
- Version: 0.2.5
- GitHub: https://github.com/YuLab-SMU/aplot
- Source code: https://github.com/cran/aplot
- Date/Publication: 2025-02-27 03:50:02 UTC
- Number of recursive dependencies: 47
Run revdepcheck::cloud_details(, "aplot") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.axisAlign:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.alab:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
applicable
- Version: 0.1.1
- GitHub: https://github.com/tidymodels/applicable
- Source code: https://github.com/cran/applicable
- Date/Publication: 2024-04-25 00:00:04 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "applicable") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(applicable)
Loading required package: ggplot2
>
> test_check("applicable")
Loading required package: dplyr
...expectedis a character vector ('percentile')
── Failure ('test-plot.R:36:3'): output of autoplot.apd_pca is correct when options=distance are provided ──
ad_plot$labels$y (actual) not equal to "percentile" (expected`).
actual is NULL
expected is a character vector ('percentile')
[ FAIL 3 | WARN 0 | SKIP 22 | PASS 90 ]
Error: Test failures
Execution halted
```
arena2r
- Version: 1.0.0
- GitHub: https://github.com/pedroliman/arena2r
- Source code: https://github.com/cran/arena2r
- Date/Publication: 2018-10-19 15:30:03 UTC
- Number of recursive dependencies: 86
Run revdepcheck::cloud_details(, "arena2r") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(arena2r)
>
> test_check("arena2r")
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('tests_arena2r.R:31:3'): plots_sao_gerados ─────────────────────────
plot_conf has type 'object', not 'list'.
── Failure ('tests_arena2r.R:32:3'): plots_sao_gerados ─────────────────────────
plot_scat has type 'object', not 'list'.
── Failure ('tests_arena2r.R:33:3'): plots_sao_gerados ─────────────────────────
plot_box has type 'object', not 'list'.
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘purrr’ ‘shinyBS’ ‘shinydashboard’ ‘shinyjs’
All declared Imports should be used.
ARUtools
- Version: 0.7.2
- GitHub: https://github.com/ARUtools/ARUtools
- Source code: https://github.com/cran/ARUtools
- Date/Publication: 2025-03-19 19:20:05 UTC
- Number of recursive dependencies: 140
Run revdepcheck::cloud_details(, "ARUtools") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ARUtools-Ex.R’ failed
The error most likely occurred in:
Name: calc_selection_weights
Title: Calculate Selection Weights
Aliases: calc_selection_weights
** Examples
s <- clean_site_index(example_sites_clean,
...
+ calc_sun()
Extracting ARU info...
Extracting Dates and Times...
Joining by columns date_time_start and date_time_end
params <- sim_selection_weights()
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ARUtools)
>
> test_check("ARUtools")
sh: 1: sox: not found
Extracting Dates and Times...
! Omitted 1 extra, non-json/GPS files
...
- │ └─base::force(code)
- └─S7:::Ops.S7_object((p1 + p2)/p3, ggplot2::theme_minimal(base_size = 14))
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 567 ]
Deleting unused snapshots:
• 08_selections/sim-selection-weights1.svg
• 08_selections/sim-selection-weights2.svg
• 08_selections/sim-selection-weights3.svg
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ARUtools.Rmd’ using rmarkdown
--- finished re-building ‘ARUtools.Rmd’
--- re-building ‘Misc.Rmd’ using rmarkdown
--- finished re-building ‘Misc.Rmd’
--- re-building ‘SubSample.Rmd’ using rmarkdown
Quitting from SubSample.Rmd:115-124 [unnamed-chunk-5]
...
--- finished re-building ‘spatial.Rmd’
--- re-building ‘timezones.Rmd’ using rmarkdown
--- finished re-building ‘timezones.Rmd’
SUMMARY: processing the following files failed:
‘SubSample.Rmd’ ‘multisampling.Rmd’
Error: Vignette re-building failed.
Execution halted
```
ASRgenomics
- Version: 1.1.4
- GitHub: NA
- Source code: https://github.com/cran/ASRgenomics
- Date/Publication: 2024-01-29 21:20:02 UTC
- Number of recursive dependencies: 136
Run revdepcheck::cloud_details(, "ASRgenomics") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...expected[2:2]: "ggplot"
── Failure ('test-qc.R:58:3'): filters work ────────────────────────────────────
class(M_filter$plot.maf) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 5 | WARN 7 | SKIP 0 | PASS 258 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
data 8.5Mb
assignPOP
- Version: 1.3.0
- GitHub: https://github.com/alexkychen/assignPOP
- Source code: https://github.com/cran/assignPOP
- Date/Publication: 2024-03-13 08:30:02 UTC
- Number of recursive dependencies: 138
Run revdepcheck::cloud_details(, "assignPOP") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(assignPOP)
>
> test_check("assignPOP")
Correct assignment rates were estimated!!
A total of 3 assignment tests for 3 pops.
...
── Failure ('test_accuracy.R:8:3'): Calculate assignment accuracy for Monte-Carlo results ──
plot has type 'object', not 'list'.
── Failure ('test_accuracy.R:18:3'): Calculate assignment accuracy for K-fold results ──
plot has type 'object', not 'list'.
── Failure ('test_membership.R:5:3'): Plot membership probability ──────────────
plot has type 'object', not 'list'.
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 39 ]
Error: Test failures
Execution halted
```
autocogs
- Version: 0.1.4
- GitHub: https://github.com/schloerke/autocogs
- Source code: https://github.com/cran/autocogs
- Date/Publication: 2021-05-29 17:00:05 UTC
- Number of recursive dependencies: 70
Run revdepcheck::cloud_details(, "autocogs") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(autocogs)
>
> test_check("autocogs")
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
8. └─autocogs (local) FUN(X[[i]], ...)
9. └─base::lapply(...)
10. └─autocogs (local) FUN(X[[i]], ...)
11. ├─base::do.call(fn, args)
12. └─autocogs (local) <fn>(...)
13. └─base::do.call(loess, c(core_params, params$method.args))
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’
All declared Imports should be used.
autoplotly
- Version: 0.1.4
- GitHub: https://github.com/terrytangyuan/autoplotly
- Source code: https://github.com/cran/autoplotly
- Date/Publication: 2021-04-18 06:50:11 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "autoplotly") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘autoplotly-Ex.R’ failed
The error most likely occurred in:
Name: autoplotly
Title: Automatic Visualization of Popular Statistical Results Using
'plotly.js' and 'ggplot2'
Aliases: autoplotly
** Examples
...
p <- autoplotly(prcomp(iris[c(1, 2, 3, 4)]), data = iris,
+ colour = 'Species', label = TRUE, label.size = 3, frame = TRUE)
Warning: aes_string() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the ggfortify package.
Please report the issue at https://github.com/sinhrks/ggfortify/issues.
Error in pm[[2]] : subscript out of bounds
Calls: autoplotly ... autoplotly.default -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(autoplotly)
>
> test_check("autoplotly")
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
▆
1. ├─autoplotly::autoplotly(...) at test_all.R:26:3
2. └─autoplotly:::autoplotly.default(...)
3. ├─plotly::ggplotly(...)
4. └─plotly:::ggplotly.ggplot(...)
5. └─plotly::gg2list(...)
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
```
autoReg
- Version: 0.3.3
- GitHub: https://github.com/cardiomoon/autoReg
- Source code: https://github.com/cran/autoReg
- Date/Publication: 2023-11-14 05:53:27 UTC
- Number of recursive dependencies: 216
Run revdepcheck::cloud_details(, "autoReg") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘autoReg-Ex.R’ failed
The error most likely occurred in:
Name: modelPlot
Title: Draw coefficients/odds ratio/hazard ratio plot
Aliases: modelPlot
** Examples
fit=lm(mpg~wt*hp+am,data=mtcars)
modelPlot(fit,widths=c(1,0,2,3))
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Automatic_Regression_Modeling.Rmd’ using rmarkdown
Quitting from Automatic_Regression_Modeling.Rmd:141-143 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! Can't find method for generic &(e1, e2):
- e1:
- e2:
...
Error: processing vignette 'Getting_started.Rmd' failed with diagnostics:
Can't find method for generic &(e1, e2):
- e1:
- e2:
--- failed re-building ‘Getting_started.Rmd’
--- re-building ‘Statiastical_test_in_gaze.Rmd’ using rmarkdown
--- finished re-building ‘Statiastical_test_in_gaze.Rmd’
--- re-building ‘Survival.Rmd’ using rmarkdown
```
bartMan
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/bartMan
- Date/Publication: 2024-07-24 12:10:02 UTC
- Number of recursive dependencies: 133
Run revdepcheck::cloud_details(, "bartMan") for more info
Newly broken
- checking whether package ‘bartMan’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘bartMan’ ...
** package ‘bartMan’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in eval(exprs[i], envir) : object 'justify_grobs' not found
Error: unable to load R code in package ‘bartMan’
Execution halted
ERROR: lazy loading failed for package ‘bartMan’
* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’
CRAN
* installing *source* package ‘bartMan’ ...
** package ‘bartMan’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bartMan)
bayesAB
- Version: 1.1.3
- GitHub: https://github.com/FrankPortman/bayesAB
- Source code: https://github.com/cran/bayesAB
- Date/Publication: 2021-06-25 00:50:02 UTC
- Number of recursive dependencies: 69
Run revdepcheck::cloud_details(, "bayesAB") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bayesAB)
>
> test_check("bayesAB")
[ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dists.R:34:3'): Success ──────────────────────────────────────
plotNormalInvGamma(3, 1, 1, 1)$labels$y not equal to "sig_sq".
target is NULL, current is character
[ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) plotDistributions.Rd:32: Lost braces
32 | plot{...} functions are generated programmatically so the function calls in
| ^
bayesassurance
- Version: 0.1.0
- GitHub: https://github.com/jpan928/bayesassurance_rpackage
- Source code: https://github.com/cran/bayesassurance
- Date/Publication: 2022-06-17 10:40:17 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "bayesassurance") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bayesassurance)
>
> test_check("bayesassurance")
[1] 20 10
[1] 30 10
[1] 40 10
...
Error inout$plot$labels`: object of type 'object' is not subsettable
Backtrace:
▆
- └─testthat::expect_identical(out$plot$labels$y, "Power/Assurance") at test-pwr_curves.R:114:3
- └─testthat::quasi_label(enquo(object), label, arg = "object")
- └─rlang::eval_bare(expr, quo_get_env(quo))
[ FAIL 15 | WARN 92 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
```
BayesCVI
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/BayesCVI
- Date/Publication: 2024-09-04 15:50:02 UTC
- Number of recursive dependencies: 30
Run revdepcheck::cloud_details(, "BayesCVI") for more info
Newly broken
- checking whether package ‘BayesCVI’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘BayesCVI’
See ‘/tmp/workdir/BayesCVI/new/BayesCVI.Rcheck/00install.out’ for details.
BayesERtools
- Version: 0.2.2
- GitHub: NA
- Source code: https://github.com/cran/BayesERtools
- Date/Publication: 2025-06-06 20:20:02 UTC
- Number of recursive dependencies: 215
Run revdepcheck::cloud_details(, "BayesERtools") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
── Failure ('test-plot_ermod.R:183:5'): plot_er show caption ───────────────────plot_er(...)produced warnings.
── Failure ('test-plot_ermod.R:194:3'): plot_er show caption ───────────────────plot_er(...)produced warnings.
── Failure ('test-plot_ermod.R:209:5'): plot_er_gof ────────────────────────────plot_er_gof(ermod_bin, show_coef_exp = TRUE, show_caption = TRUE)` produced warnings.
[ FAIL 8 | WARN 3 | SKIP 0 | PASS 168 ]
Error: Test failures
Execution halted
```
BayesianReasoning
- Version: 0.4.2
- GitHub: https://github.com/gorkang/BayesianReasoning
- Source code: https://github.com/cran/BayesianReasoning
- Date/Publication: 2023-11-14 11:33:20 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "BayesianReasoning") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BayesianReasoning)
>
> test_check("BayesianReasoning")
Plot created in: ./FP_10_sens_100_screening_1667_diagnostic_44.png
...
names(expected) is absent
── Failure ('test-PPV_heatmap.R:1097:3'): Plot with line overlay ───────────────
vapply(p$result$layers, function(x) class(x$geom)[1], "") (actual) not identical to c("GeomTile", "GeomSegment", "GeomPoint", "GeomMarkRect") (expected).
names(actual) is a character vector ('geom_tile', 'annotate', 'annotate...3', 'geom_mark_rect')
names(expected) is absent
[ FAIL 8 | WARN 16 | SKIP 4 | PASS 115 ]
Error: Test failures
Execution halted
```
BayesMallows
- Version: 2.2.3
- GitHub: https://github.com/ocbe-uio/BayesMallows
- Source code: https://github.com/cran/BayesMallows
- Date/Publication: 2025-01-14 11:30:02 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "BayesMallows") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...expectedis a character vector ('interaction(chain, cluster)')
── Failure ('test-assess_convergence.R:217:3'): assess_convergence.BayesMallowsMixtures works ──
p$labels$colour (actual) not equal to "cluster" (expected`).
actual is NULL
expected is a character vector ('cluster')
[ FAIL 10 | WARN 0 | SKIP 10 | PASS 363 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 23.8Mb
sub-directories of 1Mb or more:
doc 2.7Mb
libs 20.2Mb
BayesMultiMode
- Version: 0.7.3
- GitHub: https://github.com/paullabonne/BayesMultiMode
- Source code: https://github.com/cran/BayesMultiMode
- Date/Publication: 2024-10-31 15:30:06 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "BayesMultiMode") for more info
Newly broken
- checking whether package ‘BayesMultiMode’ can be installed ... WARNING
Found the following significant warnings:
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/tmp/workdir/BayesMultiMode/new/BayesMultiMode.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 6.5Mb
sub-directories of 1Mb or more:
help 6.1Mb
bayesplot
- Version: 1.12.0
- GitHub: https://github.com/stan-dev/bayesplot
- Source code: https://github.com/cran/bayesplot
- Date/Publication: 2025-04-10 10:10:06 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "bayesplot") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bayesplot)
This is bayesplot version 1.12.0
- Online documentation and vignettes at mc-stan.org/bayesplot
- bayesplot theme set to bayesplot::theme_default()
- Does not affect other ggplot2 plots
- See ?bayesplot_theme_set for details on theme setting
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mcmc-traces.R:59:3'): mcmc_trace options work ────────────────
all(c("xmin", "xmax", "ymin", "ymax") %in% names(ll)) is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 1032 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 9.2Mb
sub-directories of 1Mb or more:
R 5.0Mb
doc 3.5Mb
BCEA
- Version: 2.4.7
- GitHub: https://github.com/n8thangreen/BCEA
- Source code: https://github.com/cran/BCEA
- Date/Publication: 2025-01-14 12:30:08 UTC
- Number of recursive dependencies: 123
Run revdepcheck::cloud_details(, "BCEA") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘BCEA-Ex.R’ failed
The error most likely occurred in:
Name: plot.bcea
Title: Summary Plot of the Health Economic Analysis
Aliases: plot.bcea
Keywords: hplot
** Examples
...
21. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
22. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
23. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
24. │ └─base::withCallingHandlers(...)
25. └─ggplot2::merge_element(t2[[item]], t1[[item]])
26. ├─S7::S7_dispatch()
27. └─ggplot2 (local) method(merge_element, list(class_any, class_any))(new = <named list>, old = <ggpl2::_>, ...)
28. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.")
29. └─rlang::abort(...)
Execution halted
```
bdsm
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/bdsm
- Date/Publication: 2025-05-02 18:50:02 UTC
- Number of recursive dependencies: 110
Run revdepcheck::cloud_details(, "bdsm") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
[2] "ggplot" -
[3] "ggplot2::gg" -
[4] "S7_object" -
[5] "gg" | "gg" [1]
- "ggplot" [2]
[6] "ggarrange" | "ggarrange" [3]
[ FAIL 10 | WARN 0 | SKIP 6 | PASS 69 ]
Error: Test failures
Execution halted
```
In both
-
checking re-building of vignette outputs ... WARNING
``
Error(s) in re-building vignettes:
...
--- re-building ‘bdsm_vignette.Rnw’ using Sweave
Error: processing vignette 'bdsm_vignette.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'bdsm_vignette.tex' failed.
LaTeX errors:
! LaTeX Error: Filevmargin.sty' not found.
Type X to quit or to proceed,
or enter new name. (Default extension: sty)
...
l.5 \usepackage
{amsmath}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘bdsm_vignette.Rnw’
SUMMARY: processing the following file failed:
‘bdsm_vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
```
BeeBDC
- Version: 1.2.1
- GitHub: https://github.com/jbdorey/BeeBDC
- Source code: https://github.com/cran/BeeBDC
- Date/Publication: 2024-11-04 04:10:02 UTC
- Number of recursive dependencies: 217
Run revdepcheck::cloud_details(, "BeeBDC") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
attributes(testOut)$class (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
── Failure ('test-summaryMaps.R:23:3'): summaryMaps expected class ─────────────
testMap has type 'object', not 'list'.
[ FAIL 8 | WARN 5 | SKIP 0 | PASS 242 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 219 marked UTF-8 strings
benchr
- Version: 0.2.5
- GitHub: NA
- Source code: https://github.com/cran/benchr
- Date/Publication: 2020-03-07 06:30:03 UTC
- Number of recursive dependencies: 28
Run revdepcheck::cloud_details(, "benchr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
- tinytest::test_package("benchr")
- }
test-benchmark.R.............. 0 tests 0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
********|
...
call| expect_equal(class(pp2), c("gg", "ggplot"))
diff| Lengths (2, 5) differ (string compare on first 2)
diff| 1 string mismatch
----- FAILED[attr]: test-plot.R<62--62>
call| expect_equal(pp2$labels, list(x = "replications", y = "time",
call| --> colour = NULL))
diff| Attributes: < names for current but not for target >
diff| Attributes: < Length mismatch: comparison on first 0 components >
Error: 10 out of 176 tests failed
Execution halted
```
In both
-
checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
-
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
biclustermd
- Version: 0.2.3
- GitHub: https://github.com/jreisner/biclustermd
- Source code: https://github.com/cran/biclustermd
- Date/Publication: 2021-06-17 15:10:06 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "biclustermd") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biclustermd)
Loading required package: ggplot2
Loading required package: tidyr
Attaching package: 'tidyr'
...
── Failure ('test-autoplot_biclustermd.R:6:3'): autoplot_biclustermd() correctly plots cluster lines ──
ap$data[[3]]$xintercept[-1] not equal to cumsum(colSums(sbc$P)) + 0.5.
Classes differ: 'mapped_discrete'/'numeric' is not 'numeric'
── Failure ('test-autoplot_biclustermd.R:7:3'): autoplot_biclustermd() correctly plots cluster lines ──
ap$data[[4]]$yintercept[-1] not equal to cumsum(colSums(sbc$Q)) + 0.5.
Classes differ: 'mapped_discrete'/'numeric' is not 'numeric'
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 66 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘nycflights13’
All declared Imports should be used.
biometryassist
- Version: 1.2.2
- GitHub: https://github.com/biometryhub/biometryassist
- Source code: https://github.com/cran/biometryassist
- Date/Publication: 2025-04-23 15:00:07 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "biometryassist") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biometryassist)
>
> test_check("biometryassist")
Starting 2 test processes
[ FAIL 1 | WARN 4 | SKIP 122 | PASS 170 ]
...
• resplot/resplot-for-asreml-pt-1.svg
• resplot/resplot-for-asreml-pt-2.svg
• resplot/resplot-for-asreml-pt-3.svg
• resplot/resplot-for-asreml-single.svg
• resplot/resplot-for-lme4.svg
• resplot/resplot-for-sommer-mmer.svg
• resplot/resplot-for-sommer-mmes.svg
• resplot/resplot-with-smaller-call.svg
Error: Test failures
Execution halted
```
In both
-
checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'asreml', 'ARTool', 'lme4', 'sommer'
-
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘lme4’
BiVariAn
- Version: 1.0.1
- GitHub: https://github.com/AndresFloresG/BiVariAn
- Source code: https://github.com/cran/BiVariAn
- Date/Publication: 2025-03-05 13:10:02 UTC
- Number of recursive dependencies: 198
Run revdepcheck::cloud_details(, "BiVariAn") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘BiVariAn-Ex.R’ failed
The error most likely occurred in:
Name: auto_bar_categ
Title: Automatic generation of barplot with percentages
Aliases: auto_bar_categ
** Examples
data<-data.frame(categ = rep(letters[1:2], 10),
...
1. └─BiVariAn::auto_bar_categ(data = data, groupvar = "categ", lang_labs = "EN")
2. └─BiVariAn (local) theme_func()
3. ├─... %+replace% ...
4. │ └─ggplot2::is_theme(e1)
5. │ └─S7::S7_inherits(x, class_theme)
6. └─ggprism::theme_prism(...)
7. └─parent %+replace% t
8. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
9. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
- │ └─ggplot2::is_theme(e1)
- │ └─S7::S7_inherits(x, class_theme)
- └─ggprism::theme_prism(...)
- └─parent %+replace% t
- └─cli::cli_abort("{.code %+replace%} requires two theme objects")
- └─rlang::abort(...)
[ FAIL 8 | WARN 2 | SKIP 7 | PASS 100 ]
Error: Test failures
Execution halted
```
blockCV
- Version: 3.1-5
- GitHub: https://github.com/rvalavi/blockCV
- Source code: https://github.com/cran/blockCV
- Date/Publication: 2024-11-01 08:20:02 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "blockCV") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
── Failure ('test-cv_plot.R:20:13'): test that cv_plot function works ──────────plthas type 'object', not 'list'.
── Failure ('test-cv_similarity.R:23:13'): test that cv_similarity function works with cv_spatil ──plthas type 'object', not 'list'.
── Failure ('test-cv_similarity.R:39:13'): test that cv_similarity function works with cv_buffer ──plt` has type 'object', not 'list'.
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 316 ]
Error: Test failures
Execution halted
```
boxly
- Version: 0.1.1
- GitHub: https://github.com/Merck/boxly
- Source code: https://github.com/cran/boxly
- Date/Publication: 2023-10-24 02:40:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "boxly") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
- ├─plotly::add_trace(...)
- │ └─plotly::add_data(p, data)
- │ └─plotly:::is.plotly(p)
- ├─plotly::ggplotly(p, tooltip = "text", dynamicTicks = TRUE)
- └─plotly:::ggplotly.ggplot(p, tooltip = "text", dynamicTicks = TRUE)
- └─plotly::gg2list(...)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 25 ]
Error: Test failures
Execution halted
```
brolgar
- Version: 1.0.1
- GitHub: https://github.com/njtierney/brolgar
- Source code: https://github.com/cran/brolgar
- Date/Publication: 2024-05-10 14:50:34 UTC
- Number of recursive dependencies: 100
Run revdepcheck::cloud_details(, "brolgar") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘brolgar-Ex.R’ failed
The error most likely occurred in:
Name: facet_sample
Title: Facet data into groups to facilitate exploration
Aliases: facet_sample
** Examples
library(ggplot2)
ggplot(heights,
+ aes(x = year,
+ y = height_cm,
+ group = country)) +
+ geom_line() +
+ facet_sample()
Error in if (params$as.table) { : argument is of length zero
Calls: ... -> setup -> -> compute_layout
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘exploratory-modelling.Rmd’ using rmarkdown
Quitting from exploratory-modelling.Rmd:46-56 [use-gg-highlight]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'exploratory-modelling.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: geom_line.
Caused by error in aes_param_name %in% names(non_null_default_aes) && is.na(non_null_default_aes[[
aes_param_name]]):
! 'length = 2' in coercion to 'logical(1)'
--- failed re-building ‘exploratory-modelling.Rmd’
--- re-building ‘finding-features.Rmd’ using rmarkdown
```
bullseye
- Version: 1.0.0
- GitHub: https://github.com/cbhurley/bullseye
- Source code: https://github.com/cran/bullseye
- Date/Publication: 2025-05-09 10:10:02 UTC
- Number of recursive dependencies: 158
Run revdepcheck::cloud_details(, "bullseye") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘bullseye-Ex.R’ failed
The error most likely occurred in:
Name: add_nobs_to_pairwise
Title: Adds number of observations column to pairwise tibble
Aliases: add_nobs_to_pairwise
** Examples
irisc <- pairwise_scores(iris[40:150,], by= "Species")
...
20. │ └─base::lapply(...)
21. │ └─ggplot2 (local) FUN(X[[i]], ...)
22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
23. │ └─self$draw_panel(...)
24. └─base::.handleSimpleError(...)
25. └─rlang (local) h(simpleError(msg, call))
26. └─handlers[1L]
27. └─cli::cli_abort(...)
28. └─rlang::abort(...)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘calc_pairwise.Rmd’ using rmarkdown
--- finished re-building ‘calc_pairwise.Rmd’
--- re-building ‘integrating.Rmd’ using rmarkdown
```
calibmsm
- Version: 1.1.2
- GitHub: NA
- Source code: https://github.com/cran/calibmsm
- Date/Publication: 2025-06-06 11:10:02 UTC
- Number of recursive dependencies: 171
Run revdepcheck::cloud_details(, "calibmsm") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
[2] "ggplot" -
[3] "ggplot2::gg" -
[4] "S7_object" -
[5] "gg" | "gg" [1]
- "ggplot" [2]
[6] "ggarrange" | "ggarrange" [3]
[ FAIL 5 | WARN 0 | SKIP 15 | PASS 210 ]
Error: Test failures
Execution halted
```
calmr
- Version: 0.7.0
- GitHub: https://github.com/victor-navarro/calmr
- Source code: https://github.com/cran/calmr
- Date/Publication: 2025-05-11 21:30:02 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "calmr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(calmr)
Attaching package: 'calmr'
The following object is masked from 'package:stats':
...
── Failure ('test-RSA.R:64:3'): plotting RSA with a test works ─────────────────
plt does not have names.
── Failure ('test-graphs.R:15:3'): calmr_model_graph works ─────────────────────
g does not have names.
── Failure ('test-graphs.R:25:3'): calmr_model_graph takes a trial ─────────────
g does not have names.
[ FAIL 4 | WARN 5 | SKIP 0 | PASS 246 ]
Error: Test failures
Execution halted
```
canvasXpress
- Version: 1.56.1
- GitHub: https://github.com/neuhausi/canvasXpress
- Source code: https://github.com/cran/canvasXpress
- Date/Publication: 2025-04-08 19:30:02 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "canvasXpress") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(canvasXpress)
> require(canvasXpress.data)
Loading required package: canvasXpress.data
>
> test_check("canvasXpress")
Loading required package: htmlwidgets
...
- │ └─base::withCallingHandlers(...)
- └─canvasXpress::ggplot.as.list(gplot)
- └─canvasXpress:::gg_cxplot(o, "canvas", ...)
- └─canvasXpress:::gg_theme(o)
- ├─base::as.character(e[[a]])
- └─base::as.character.default(e[[a]])
[ FAIL 9 | WARN 1 | SKIP 479 | PASS 58 ]
Error: Test failures
Execution halted
```
carbonr
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/carbonr
- Date/Publication: 2024-10-16 18:10:09 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "carbonr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(carbonr)
>
> test_check("carbonr")
[ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('test-output_display.R:15:3'): output_display generates gg/ggplot object ──
class(output1) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-output_display.R:16:3'): output_display generates gg/ggplot object ──
class(output2) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ]
Error: Test failures
Execution halted
```
In both
-
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘sp’ ‘tibble’
All declared Imports should be used.
-
checking data for non-ASCII characters ... NOTE
Note: found 710 marked UTF-8 strings
cartograflow
- Version: 1.0.5
- GitHub: https://github.com/fbahoken/cartogRaflow
- Source code: https://github.com/cran/cartograflow
- Date/Publication: 2023-10-17 22:40:21 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "cartograflow") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘cartograflow-Ex.R’ failed
The error most likely occurred in:
Name: flowgini
Title: Analysis of flow concentration (Gini coefficient)
Aliases: flowgini
** Examples
library(cartograflow)
...
ℹ Use flowcum instead.
Warning: Use of x$linkcum is discouraged.
ℹ Use linkcum instead.
Warning: Use of x$flowcum is discouraged.
ℹ Use flowcum instead.
Warning: Use of x$flowcum is discouraged.
ℹ Use flowcum instead.
Error in pm[[2]] : subscript out of bounds
Calls: flowgini ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
cartographr
- Version: 0.2.2
- GitHub: https://github.com/da-wi/cartographr
- Source code: https://github.com/cran/cartographr
- Date/Publication: 2024-06-28 14:50:09 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "cartographr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
> test_check("cartographr")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-utils.R:13:3'): add_attribution returns correct ggplot2 labs object ──
result inherits from 'ggplot2::labels'/'gg'/'S7_object' not 'labels'.
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 3.5Mb
cats
- Version: 1.0.2
- GitHub: NA
- Source code: https://github.com/cran/cats
- Date/Publication: 2022-03-11 10:20:07 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "cats") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘cats-Ex.R’ failed
The error most likely occurred in:
Name: trial_ocs
Title: Calculates the operating characteristics of the cohort trial
Aliases: trial_ocs
** Examples
...
+ safety_prob = safety_prob, Bayes_Sup1 = Bayes_Sup1, Bayes_Sup2 = Bayes_Sup2,
+ cohort_offset = cohort_offset, sr_first_pos = sr_first_pos,
+ missing_prob = missing_prob, cohort_fixed = cohort_fixed, accrual_type = accrual_type,
+ accrual_param = accrual_param, hist_lag = hist_lag, analysis_times = analysis_times,
+ time_trend = time_trend, cohorts_start = cohorts_start, cohorts_sim = cohorts_sim,
+ iter = 2, coresnum = 1, save = FALSE, ret_list = TRUE, plot_ocs = TRUE
+ )
Error in pm[[2]] : subscript out of bounds
Calls: trial_ocs -> -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘epitools’ ‘forcats’ ‘purrr’
All declared Imports should be used.
causact
- Version: 0.5.7
- GitHub: https://github.com/flyaflya/causact
- Source code: https://github.com/cran/causact
- Date/Publication: 2025-01-15 21:20:01 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "causact") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(causact)
WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment.
Attaching package: 'causact'
The following objects are masked from 'package:stats':
...
WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment.
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dag_plot.R:4:3'): dag plot creates graph ─────────────────────
plotGr has type 'object', not 'list'.
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ]
Error: Test failures
Execution halted
```
CausalImpact
- Version: 1.3.0
- GitHub: NA
- Source code: https://github.com/cran/CausalImpact
- Date/Publication: 2022-11-09 08:40:40 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "CausalImpact") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘CausalImpact_import_test.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # Copyright 2014-2022 Google Inc. All rights reserved.
> #
> # Licensed under the Apache License, Version 2.0 (the "License");
> # you may not use this file except in compliance with the License.
> # You may obtain a copy of the License at
> #
...
Lengths differ: 5 is not 2
── Failure ('test-impact-plot.R:147:3'): CreateImpactPlot ──────────────────────
!isTRUE(all.equal(q1, q2, check.environment = FALSE)) is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 3 | WARN 4 | SKIP 0 | PASS 738 ]
Error: Test failures
Execution halted
```
centerline
- Version: 0.2.2
- GitHub: https://github.com/atsyplenkov/centerline
- Source code: https://github.com/cran/centerline
- Date/Publication: 2025-03-16 04:40:02 UTC
- Number of recursive dependencies: 108
Run revdepcheck::cloud_details(, "centerline") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘centerline-Ex.R’ failed
The error most likely occurred in:
Name: geom_cnt_text
Title: Plot label or text on centerline with ggplot2
Aliases: geom_cnt_text geom_cnt_label
** Examples
Don't show:
...
24. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
25. │ └─self$draw_panel(...)
26. │ └─geomtextpath (local) draw_panel(...)
27. │ └─geomtextpath:::sf_textgrob(...)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[1L]
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
6. └─base::lapply(...)
7. └─ggplot2 (local) FUN(X[[i]], ...)
8. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
9. └─self$draw_panel(...)
- └─geomtextpath (local) draw_panel(...)
- └─geomtextpath:::sf_textgrob(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 245 ]
Error: Test failures
Execution halted
```
Certara.Xpose.NLME
- Version: 2.0.2
- GitHub: NA
- Source code: https://github.com/cran/Certara.Xpose.NLME
- Date/Publication: 2025-01-28 15:50:10 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "Certara.Xpose.NLME") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘Certara.Xpose.NLME-Ex.R’ failed
The error most likely occurred in:
Name: eta_vs_cov
Title: ETAs vs covariate Plot
Aliases: eta_vs_cov
** Examples
eta_vs_cov(xpose::xpdb_ex_pk,
...
4. ├─purrr::map_if(...)
5. │ └─purrr:::where_if(.x, .p)
6. │ └─rlang::is_logical(.p)
7. ├─stringr::str_detect(., "@")
8. │ └─stringr:::check_lengths(string, pattern)
9. │ └─vctrs::vec_size_common(...)
10. └─vctrs:::stop_scalar_type(<fn>(<ggplt2::>), "string", <env>)
11. └─vctrs:::stop_vctrs(...)
12. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
cheem
- Version: 0.4.0.0
- GitHub: https://github.com/nspyrison/cheem
- Source code: https://github.com/cran/cheem
- Date/Publication: 2023-11-08 21:30:02 UTC
- Number of recursive dependencies: 148
Run revdepcheck::cloud_details(, "cheem") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cheem)
--------------------------------------------------------
cheem --- version 0.4.0.0
Please share bugs, suggestions, and feature requests at:
https://github.com/nspyrison/cheem/issues/
--------------------------------------------------------
...
- │ ├─utils::modifyList(x %||% list(), y %||% list(), ...)
- │ │ └─base::stopifnot(is.list(x), is.list(val))
- │ └─x %||% list()
- ├─plotly::ggplotly(...)
- └─plotly:::ggplotly.ggplot(...)
- └─plotly::gg2list(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 8 ]
Error: Test failures
Execution halted
```
ChemoSpec
- Version: 6.1.11
- GitHub: https://github.com/bryanhanson/ChemoSpec
- Source code: https://github.com/cran/ChemoSpec
- Date/Publication: 2025-04-15 15:00:09 UTC
- Number of recursive dependencies: 160
Run revdepcheck::cloud_details(, "ChemoSpec") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ChemoSpec.Rmd’ using rmarkdown
Quitting from ChemoSpec.Rmd:464-468 [load1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! Can't find method for generic &(e1, e2):
- e1:
- e2:
...
Can't find method for generic &(e1, e2):
- e1:
- e2:
--- failed re-building ‘ChemoSpec.Rmd’
SUMMARY: processing the following file failed:
‘ChemoSpec.Rmd’
Error: Vignette re-building failed.
Execution halted
```
ChemoSpecUtils
- Version: 1.0.5
- GitHub: https://github.com/bryanhanson/ChemoSpecUtils
- Source code: https://github.com/cran/ChemoSpecUtils
- Date/Publication: 2025-04-12 15:30:04 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "ChemoSpecUtils") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ChemoSpecUtils-Ex.R’ failed
The error most likely occurred in:
Name: GraphicsOptions
Title: Graphic Output Options in ChemoSpec and ChemoSpec2D
Aliases: GraphicsOptions
Keywords: utilities
** Examples
...
ℹ Adding new coordinate system, which will replace the existing one.
Warning: aes_string() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the ChemoSpec package.
Please report the issue at https://github.com/bryanhanson/ChemoSpec/issues.
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
chillR
- Version: 0.76
- GitHub: NA
- Source code: https://github.com/cran/chillR
- Date/Publication: 2024-11-14 09:40:02 UTC
- Number of recursive dependencies: 133
Run revdepcheck::cloud_details(, "chillR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘chillR-Ex.R’ failed
The error most likely occurred in:
Name: plot_scenarios
Title: Plot historic and future scenarios for climate-related metrics
(ggplot2 version)
Aliases: plot_scenarios
** Examples
...
Plot the climate scenarios
plot_scenarios(climate_scenario_list, metric = 'Chill_Portions',
+ add_historic = TRUE, size = 2, shape = 3, color = 'blue',
+ outlier_shape = 12, historic_color = 'skyblue',
+ group_by = c("Year", "Scenario"))
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
chronicle
- Version: 0.3
- GitHub: NA
- Source code: https://github.com/cran/chronicle
- Date/Publication: 2021-06-25 05:00:02 UTC
- Number of recursive dependencies: 143
Run revdepcheck::cloud_details(, "chronicle") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘chronicle-Ex.R’ failed
The error most likely occurred in:
Name: make_barplot
Title: Create a bar plot from a data frame through ggplotly
Aliases: make_barplot
** Examples
make_barplot(dt = iris, bars = 'Species', value = 'Sepal.Length')
Error in pm[[2]] : subscript out of bounds
Calls: make_barplot -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘chronicle.Rmd’ using rmarkdown
Quitting from chronicle.Rmd:37-67 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'chronicle.Rmd' failed with diagnostics:
...
ℹ In index: 1.
Caused by error in pm[[2]]:
! subscript out of bounds
--- failed re-building ‘chronicle.Rmd’
SUMMARY: processing the following file failed:
‘chronicle.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘DT’ ‘dplyr’ ‘prettydoc’ ‘rmdformats’ ‘skimr’
All declared Imports should be used.
circumplex
- Version: 1.0.0
- GitHub: https://github.com/jmgirard/circumplex
- Source code: https://github.com/cran/circumplex
- Date/Publication: 2024-10-28 04:30:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "circumplex") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(circumplex)
>
> test_check("circumplex")
[ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
...
[ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ]
Deleting unused snapshots:
• ssm_plot/many-circle-repel.svg
• ssm_plot/many-curve-plots.svg
• ssm_plot/measure-contrast-circle-ssm.svg
• ssm_plot/measure-contrast-curve-ssm.svg
• ssm_plot/single-group-mean-ssm-no-palette.svg
• ssm_plot/single-group-mean-ssm-with-labels.svg
Error: Test failures
Execution halted
```
classmap
- Version: 1.2.4
- GitHub: NA
- Source code: https://github.com/cran/classmap
- Date/Publication: 2025-05-13 22:00:02 UTC
- Number of recursive dependencies: 132
Run revdepcheck::cloud_details(, "classmap") for more info
Newly broken
- checking whether package ‘classmap’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘ggplot2::element’ by ‘e1071::element’ when loading ‘classmap’
See ‘/tmp/workdir/classmap/new/classmap.Rcheck/00install.out’ for details.
In both
- checking data for non-ASCII characters ... NOTE
Note: found 9 marked UTF-8 strings
clifro
- Version: 3.2-5
- GitHub: https://github.com/ropensci/clifro
- Source code: https://github.com/cran/clifro
- Date/Publication: 2021-05-24 05:50:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "clifro") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> library(clifro)
>
> test_check("clifro")
[ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ]
...
• On CRAN (4): 'test-cf_find_station.R:4:3', 'test-cf_last_query.R:4:3',
'test-cf_query.R:4:3', 'test-cf_station.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-windrose.R:15:3'): windrose ──────────────────────────────────
tt$labels inherits from 'ggplot2::labels'/'gg'/'S7_object' not 'character'.
[ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) cf_save_kml.Rd:68: Lost braces
68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for
| ^
climwin
- Version: 1.2.31
- GitHub: https://github.com/LiamDBailey/climwin
- Source code: https://github.com/cran/climwin
- Date/Publication: 2025-06-08 16:40:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "climwin") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(climwin)
>
> test_check("climwin")
|
| | 0%
...
expected: TRUE
── Failure ('testplotwin.R:15:3'): plotwin produces a graph ────────────────────
attr(test, "class")[1] == "gg" is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 7 | WARN 761 | SKIP 3 | PASS 790 ]
Error: Test failures
Execution halted
```
clinDataReview
- Version: 1.6.2
- GitHub: https://github.com/openanalytics/clinDataReview
- Source code: https://github.com/cran/clinDataReview
- Date/Publication: 2025-04-11 22:10:02 UTC
- Number of recursive dependencies: 117
Run revdepcheck::cloud_details(, "clinDataReview") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘clinDataReview-Ex.R’ failed
The error most likely occurred in:
Name: scatterplotClinData
Title: Scatterplot of variables of interest for clinical data
visualization.
Aliases: scatterplotClinData
** Examples
...
+ data = dataPlot,
+ xVar = "ADY",
+ yVar = "LBSTRESN",
+ aesPointVar = list(color = "TRTP", fill = "TRTP"),
+ aesLineVar = list(group = "USUBJID", color = "TRTP"),
+ labelVars = labelVars
+ )
Error in pm[[2]] : subscript out of bounds
Calls: scatterplotClinData -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies172d6f8f416/ (stored 0%)
adding: report_dependencies172d6f8f416/file172d481ba5e0.html (deflated 8%)
...
Backtrace:
▆
- └─clinDataReview::scatterplotClinData(...) at test_scatterplotClinData.R:1001:3
- ├─plotly::ggplotly(p = gg, width = width, height = height, tooltip = if (!is.null(hoverVars)) "text")
- └─plotly:::ggplotly.ggplot(...)
- └─plotly::gg2list(...)
[ FAIL 31 | WARN 0 | SKIP 31 | PASS 466 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘clinDataReview-dataPreprocessing.Rmd’ using rmarkdown
--- finished re-building ‘clinDataReview-dataPreprocessing.Rmd’
--- re-building ‘clinDataReview-dataVisualization.Rmd’ using rmarkdown
Quitting from clinDataReview-dataVisualization.Rmd:169-211 [timeProfiles]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
...
--- failed re-building ‘clinDataReview-dataVisualization.Rmd’
--- re-building ‘clinDataReview-reporting.Rmd’ using rmarkdown
--- finished re-building ‘clinDataReview-reporting.Rmd’
SUMMARY: processing the following file failed:
‘clinDataReview-dataVisualization.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 4.3Mb
clinUtils
- Version: 0.2.0
- GitHub: https://github.com/openanalytics/clinUtils
- Source code: https://github.com/cran/clinUtils
- Date/Publication: 2024-05-17 14:50:06 UTC
- Number of recursive dependencies: 107
Run revdepcheck::cloud_details(, "clinUtils") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘clinUtils-vignette.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 7.7Mb
sub-directories of 1Mb or more:
doc 6.5Mb
clockSim
- Version: 0.1.2
- GitHub: https://github.com/yeyuan98/clockSim
- Source code: https://github.com/cran/clockSim
- Date/Publication: 2025-04-22 20:10:01 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "clockSim") for more info
Newly broken
- checking whether package ‘clockSim’ can be installed ... WARNING
Found the following significant warnings:
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/tmp/workdir/clockSim/new/clockSim.Rcheck/00install.out’ for details.
clustcurv
- Version: 2.0.2
- GitHub: https://github.com/noramvillanueva/clustcurv
- Source code: https://github.com/cran/clustcurv
- Date/Publication: 2024-10-25 08:20:07 UTC
- Number of recursive dependencies: 106
Run revdepcheck::cloud_details(, "clustcurv") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘clustcurv.Rmd’ using rmarkdown
Quitting from clustcurv.Rmd:92-94 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
Backtrace:
...
Error: processing vignette 'clustcurv.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘clustcurv.Rmd’
SUMMARY: processing the following file failed:
‘clustcurv.Rmd’
Error: Vignette re-building failed.
Execution halted
```
cmcR
- Version: 0.1.11
- GitHub: NA
- Source code: https://github.com/cran/cmcR
- Date/Publication: 2022-12-10 14:00:02 UTC
- Number of recursive dependencies: 120
Run revdepcheck::cloud_details(, "cmcR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cmcR)
>
> test_check("cmcR",reporter = SummaryReporter)
adding: bindata/ (stored 0%)
adding: bindata/data.bin (deflated 58%)
adding: main.xml (deflated 62%)
...
── 2. Failure ('test-diagnosticTools.R:104:3'): diagnosticTools functions work a
all(unlist(purrr::map(cmcPlt_list, ~class(.) == c("gg", "ggplot")))) is not TRUE
actual: FALSE
expected: TRUE
══ DONE ════════════════════════════════════════════════════════════════════════
I believe in you!
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 2.5Mb
doc 2.3Mb
cnmap
- Version: 0.1.0
- GitHub: https://github.com/PanfengZhang/cnmap
- Source code: https://github.com/cran/cnmap
- Date/Publication: 2024-04-02 12:42:06 UTC
- Number of recursive dependencies: 58
Run revdepcheck::cloud_details(, "cnmap") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘cnmap-Ex.R’ failed
The error most likely occurred in:
Name: getMap
Title: China Map Data from AutoNavi Map
Aliases: getMap
** Examples
library(cnmap)
map1 <- getMap(code = "110000") # get the map data of Beijing City
Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
package tibble not available: install first?
Calls: getMap ... st_read -> st_read.character -> process_cpl_read_ogr
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Introduction.Rmd’ using rmarkdown
Quitting from Introduction.Rmd:28-35 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in process_cpl_read_ogr():
! package tibble not available: install first?
Backtrace:
...
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
package tibble not available: install first?
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
```
CNVreg
- Version: 1.0
- GitHub: NA
- Source code: https://github.com/cran/CNVreg
- Date/Publication: 2025-03-10 16:50:21 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "CNVreg") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘CNVReg_vig.Rmd’ using rmarkdown
Quitting from CNVReg_vig.Rmd:322-378 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! Can't find method for generic &(e1, e2):
- e1:
- e2:
...
Can't find method for generic &(e1, e2):
- e1:
- e2:
--- failed re-building ‘CNVReg_vig.Rmd’
SUMMARY: processing the following file failed:
‘CNVReg_vig.Rmd’
Error: Vignette re-building failed.
Execution halted
```
cocktailApp
- Version: 0.2.3
- GitHub: https://github.com/shabbychef/cocktailApp
- Source code: https://github.com/cran/cocktailApp
- Date/Publication: 2023-07-19 13:40:09 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "cocktailApp") for more info
Newly broken
- checking whether package ‘cocktailApp’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details.
Newly fixed
- checking data for non-ASCII characters ... NOTE
Note: found 14729 marked UTF-8 strings
Installation
Devel
* installing *source* package ‘cocktailApp’ ...
** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: <ggplot2::element_line> object properties are invalid:
- @lineend must be <character> or <NULL>, not S3<arrow>
Execution halted
ERROR: lazy loading failed for package ‘cocktailApp’
* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’
CRAN
* installing *source* package ‘cocktailApp’ ...
** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cocktailApp)
coda.plot
- Version: 0.1.9
- GitHub: NA
- Source code: https://github.com/cran/coda.plot
- Date/Publication: 2025-04-20 21:30:02 UTC
- Number of recursive dependencies: 41
Run revdepcheck::cloud_details(, "coda.plot") for more info
Newly broken
- checking whether package ‘coda.plot’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘coda.plot’ ...
** package ‘coda.plot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: <ggplot2::element_line> object properties are invalid:
- @lineend must be <character> or <NULL>, not S3<arrow>
Execution halted
ERROR: lazy loading failed for package ‘coda.plot’
* removing ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/coda.plot’
CRAN
* installing *source* package ‘coda.plot’ ...
** package ‘coda.plot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coda.plot)
CohortPlat
- Version: 1.0.5
- GitHub: NA
- Source code: https://github.com/cran/CohortPlat
- Date/Publication: 2022-02-14 09:30:02 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "CohortPlat") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘CohortPlat-Ex.R’ failed
The error most likely occurred in:
Name: plot_trial
Title: Plots the cohort trial study overview given stage data.
Aliases: plot_trial
** Examples
...
+ stage_data = stage_data, cohort_random = cohort_random, cohorts_max = cohorts_max,
+ sr_drugs_pos = sr_drugs_pos, target_rr = target_rr, sharing_type = sharing_type,
+ safety_prob = safety_prob, Bayes_Sup = Bayes_Sup, prob_rr_transform = prob_rr_transform,
+ cohort_offset = cohort_offset, Bayes_Fut = Bayes_Fut, sr_first_pos = sr_first_pos
+ )
plot_trial(res_list, unit = "n")
Error in pm[[2]] : subscript out of bounds
Calls: plot_trial -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘my-vignette.Rmd’ using rmarkdown
Quitting from my-vignette.Rmd:1042-1073 [unnamed-chunk-20]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
Backtrace:
...
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘my-vignette.Rmd’
SUMMARY: processing the following file failed:
‘my-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
```
colorrepel
- Version: 0.4.1
- GitHub: https://github.com/raysinensis/color_repel
- Source code: https://github.com/cran/colorrepel
- Date/Publication: 2025-01-19 04:50:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "colorrepel") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘colorrepel-Ex.R’ failed
The error most likely occurred in:
Name: ggplotly_background
Title: Prepare ggplot object to ggplotly-compatible layer and image
layer
Aliases: ggplotly_background
** Examples
a <- ggplot2::ggplot(ggplot2::mpg, ggplot2::aes(displ, hwy)) +
+ ggplot2::geom_point(ggplot2::aes(color = as.factor(cyl)))
new_colors <- color_repel(a)
b <- ggplotly_background(a, filename = NULL)
Error in pm[[2]] : subscript out of bounds
Calls: ggplotly_background -> -> ggplotly.ggplot -> gg2list
Execution halted
```
conquestr
- Version: 1.5.1
- GitHub: NA
- Source code: https://github.com/cran/conquestr
- Date/Publication: 2025-05-18 07:50:02 UTC
- Number of recursive dependencies: 77
Run revdepcheck::cloud_details(, "conquestr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(conquestr)
>
> test_check("conquestr")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ConQuestRout.R:10:3'): Rout file is of correct type ──────────
myRoutPlot has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ]
Error: Test failures
Execution halted
```
constructive
- Version: 1.1.0
- GitHub: https://github.com/cynkra/constructive
- Source code: https://github.com/cran/constructive
- Date/Publication: 2025-01-10 14:10:01 UTC
- Number of recursive dependencies: 111
Run revdepcheck::cloud_details(, "constructive") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(constructive)
>
> test_check("constructive")
[ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ]
══ Skipped tests (113) ═════════════════════════════════════════════════════════
...
13. │ └─constructive:::strip_theme(x)
14. │ └─constructive:::$<-(*tmp*, size, value = NULL)
15. │ └─constructive:::[[<-(...)
16. └─rlang (local) <fn>(<ntSbsttE>)
17. └─handlers[1L]
18. └─rlang::abort(...)
[ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ]
Error: Test failures
Execution halted
```
contsurvplot
- Version: 0.2.1
- GitHub: https://github.com/RobinDenz1/contsurvplot
- Source code: https://github.com/cran/contsurvplot
- Date/Publication: 2023-08-15 08:00:03 UTC
- Number of recursive dependencies: 156
Run revdepcheck::cloud_details(, "contsurvplot") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(contsurvplot)
Please cite as:
Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630.
library(survival)
library(testthat)
...
• plot_surv_contour/plot-change-horizon.svg
• plot_surv_contour/plot-cif.svg
• plot_surv_contour/plot-custom-colors.svg
• plot_surv_contour/plot-defaults.svg
• plot_surv_contour/plot-lots-of-stuff.svg
• plot_surv_contour/plot-panel-border-axis-dist.svg
• plot_surv_contour/plot-with-group.svg
• plot_surv_heatmap/plot-contour-lines.svg
Error: Test failures
Execution halted
```
CoreMicrobiomeR
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/CoreMicrobiomeR
- Date/Publication: 2024-04-03 20:03:02 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "CoreMicrobiomeR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘CoreMicrobiomeR-Ex.R’ failed
The error most likely occurred in:
Name: group_bar_plots
Title: Grouped Bar Plots Based on Sample Size
Aliases: group_bar_plots
** Examples
To run input data
...
+ top_percentage = 10 # Adjust the percentage as needed for core/non-core OTUs
+ )
Warning encountered during diversity analysis:you have empty rows: their dissimilarities may be
meaningless in method “bray”
To run grouped bar plot function
plot_group_bar <- group_bar_plots(core_1$final_otu_table_bef_filter,
+ core_1$final_otu_aft_filter, 10)
Error in pm[[2]] : subscript out of bounds
Calls: group_bar_plots -> -> ggplotly.ggplot -> gg2list
Execution halted
```
correlationfunnel
- Version: 0.2.0
- GitHub: https://github.com/business-science/correlationfunnel
- Source code: https://github.com/cran/correlationfunnel
- Date/Publication: 2020-06-09 04:40:03 UTC
- Number of recursive dependencies: 113
Run revdepcheck::cloud_details(, "correlationfunnel") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
...
▆
1. ├─correlationfunnel::plot_correlation_funnel(...) at test-plot_correlation_funnel.R:23:1
2. └─correlationfunnel:::plot_correlation_funnel.data.frame(...)
3. ├─plotly::ggplotly(g, tooltip = "text")
4. └─plotly:::ggplotly.ggplot(g, tooltip = "text")
5. └─plotly::gg2list(...)
[ FAIL 1 | WARN 3 | SKIP 0 | PASS 17 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘utils’
All declared Imports should be used.
corrViz
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/corrViz
- Date/Publication: 2023-06-30 11:40:07 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "corrViz") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘corrViz-Ex.R’ failed
The error most likely occurred in:
Name: animSolar
Title: animSolar
Aliases: animSolar
** Examples
cm <- cor(mtcars)
...
All aesthetics have length 1, but the data has 250 rows.
ℹ Please consider using annotate() or provide this layer with data containing
a single row.
Warning in geom_text(data = solar_system, aes(x = 0, y = 0, label = sun), :
All aesthetics have length 1, but the data has 250 rows.
ℹ Please consider using annotate() or provide this layer with data containing
a single row.
Error in pm[[2]] : subscript out of bounds
Calls: animSolar -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘corrViz.Rmd’ using rmarkdown
Quitting from corrViz.Rmd:75-81 [heatmap]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
Backtrace:
...
Error: processing vignette 'corrViz.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘corrViz.Rmd’
SUMMARY: processing the following file failed:
‘corrViz.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
doc 6.7Mb
CoSMoS
- Version: 2.1.0
- GitHub: https://github.com/TycheLab/CoSMoS
- Source code: https://github.com/cran/CoSMoS
- Date/Publication: 2021-05-29 23:20:08 UTC
- Number of recursive dependencies: 77
Run revdepcheck::cloud_details(, "CoSMoS") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘vignette.Rmd’ using rmarkdown
countfitteR
- Version: 1.4
- GitHub: https://github.com/BioGenies/countfitteR
- Source code: https://github.com/cran/countfitteR
- Date/Publication: 2020-09-30 21:30:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "countfitteR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(countfitteR)
>
> test_check("countfitteR")
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ]
...
1. ├─testthat::expect_equal(p$labels[[1]], "x") at testing.R:45:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─p$labels[[1]]
5. ├─S7:::[[.S7_object(p$labels, 1)
6. └─base::NextMethod()
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
countries
- Version: 1.2.1
- GitHub: https://github.com/fbellelli/countries
- Source code: https://github.com/cran/countries
- Date/Publication: 2025-02-22 14:10:02 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "countries") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(countries)
>
> test_check("countries")
In total 1 unique country names were provided
1/1 have been matched with EXACT matching
...
expected[2:2]: "ggplot"
── Failure ('test_function_output.R:319:3'): output from quick_map() are as expected ──
class(quick_map(example, "test", col_na = "black")) (actual) not equal to c("gg", "ggplot") (expected).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 9 | WARN 0 | SKIP 2 | PASS 137 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 9044 marked UTF-8 strings
covidcast
- Version: 0.5.2
- GitHub: https://github.com/cmu-delphi/covidcast
- Source code: https://github.com/cran/covidcast
- Date/Publication: 2023-07-12 23:40:06 UTC
- Number of recursive dependencies: 89
Run revdepcheck::cloud_details(, "covidcast") for more info
Newly broken
-
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(covidcast)
We encourage COVIDcast API users to register on our mailing list:
https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api
We'll send announcements about new data sources, package updates,
server maintenance, and new features.
>
...
• plot/default-county-choropleth.svg
• plot/default-hrr-choropleth-with-include.svg
• plot/default-msa-choropleth-with-include.svg
• plot/default-state-choropleth-with-include.svg
• plot/default-state-choropleth-with-range.svg
• plot/state-choropleth-with-no-metadata.svg
• plot/state-line-graph-with-range.svg
• plot/state-line-graph-with-stderrs.svg
Error: Test failures
Execution halted
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘correlation-utils.Rmd’ using rmarkdown
--- finished re-building ‘correlation-utils.Rmd’
--- re-building ‘covidcast.Rmd’ using rmarkdown
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 20 marked UTF-8 strings
cowplot
- Version: 1.1.3
- GitHub: https://github.com/wilkelab/cowplot
- Source code: https://github.com/cran/cowplot
- Date/Publication: 2024-01-22 23:22:51 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "cowplot") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cowplot)
>
> test_check("cowplot")
[ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_ggdraw.R:7:3'): basic ggdraw usage ───────────────────────────
methods::is(g) not equal to "gg".
1/1 mismatches
x[1]: "ggplot2::ggplot"
y[1]: "gg"
[ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ]
Error: Test failures
Execution halted
```
Coxmos
- Version: 1.1.3
- GitHub: https://github.com/BiostatOmics/Coxmos
- Source code: https://github.com/cran/Coxmos
- Date/Publication: 2025-06-02 18:02:02 UTC
- Number of recursive dependencies: 201
Run revdepcheck::cloud_details(, "Coxmos") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘Coxmos-Ex.R’ failed
The error most likely occurred in:
Name: plot_evaluation
Title: plot_evaluation
Aliases: plot_evaluation
** Examples
data("X_proteomic")
...
Y_test <- Y_proteomic[-index_train,]
coxEN.model <- coxEN(X_train, Y_train, x.center = TRUE, x.scale = TRUE)
Warning: from glmnet C++ code (error code -10013); Number of nonzero coefficients along the path exceeds pmax=7 at 13th lambda value; solutions for larger lambdas returned
eval_results <- eval_Coxmos_models(lst_models = list("coxEN" = coxEN.model), X_test = X_test,
+ Y_test = Y_test)
plot_eval_results <- plot_evaluation(eval_results)
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
R 1.5Mb
data 2.5Mb
doc 2.8Mb
cry
- Version: 0.5.1
- GitHub: NA
- Source code: https://github.com/cran/cry
- Date/Publication: 2022-10-10 08:00:05 UTC
- Number of recursive dependencies: 50
Run revdepcheck::cloud_details(, "cry") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘cry-Ex.R’ failed
The error most likely occurred in:
Name: plot_SHELX
Title: Plot SHELXC log files
Aliases: plot_SHELX
** Examples
datadir <- system.file("extdata",package="cry")
SHELXC
shelxc_log <- file.path(datadir,"shelxc.log")
shelxc <- read_SHELX_log(shelxc_log)
plot_shelxc <- plot_SHELX(filename = shelxc, var = shelxc$I_sig,
+ type = "shelxc", title_chart = "SHELXC")
Error in rep(yes, length.out = len) :
attempt to replicate an object of type 'object'
Calls: plot_SHELX -> ifelse -> ifelse -> ifelse
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘MTZ.Rmd’ using rmarkdown
In both
- checking Rd files ... NOTE
checkRd: (-1) calculate_cell_volume.Rd:16: Lost braces; missing escapes or markup?
16 | V A real number. The volume (in angstroms^3 or angstroms^{-3})
| ^
ctrialsgov
- Version: 0.2.5
- GitHub: NA
- Source code: https://github.com/cran/ctrialsgov
- Date/Publication: 2021-10-18 16:00:02 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "ctrialsgov") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ctrialsgov)
>
> test_check("ctrialsgov")
[NCT04553939] ible Local Advanved |Bladder| Cancer
[NCT03517995] of Sulforaphane in |Bladder| Cancer Chemoprevent
[NCT04210479] Comparison of |Bladder| Filling vs. Non-Fil
...
▆
- ├─ctrialsgov::ctgov_to_plotly(p) at test-plot.R:12:3
- └─ctrialsgov:::ctgov_to_plotly.ctgov_bar_plot(p)
- ├─plotly::ggplotly(p, tooltip = "text")
- └─plotly:::ggplotly.ggplot(p, tooltip = "text")
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 43 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 1350 marked UTF-8 strings
cubble
- Version: 1.0.0
- GitHub: https://github.com/huizezhang-sherry/cubble
- Source code: https://github.com/cran/cubble
- Date/Publication: 2024-08-27 15:20:02 UTC
- Number of recursive dependencies: 130
Run revdepcheck::cloud_details(, "cubble") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘cb1class.Rmd’ using rmarkdown
--- finished re-building ‘cb1class.Rmd’
--- re-building ‘cb2create.Rmd’ using rmarkdown
--- finished re-building ‘cb2create.Rmd’
--- re-building ‘cb3tsibblesf.Rmd’ using rmarkdown
--- finished re-building ‘cb3tsibblesf.Rmd’
--- re-building ‘cb4glyph.Rmd’ using rmarkdown
```
In both
- checking installed package size ... NOTE
installed size is 8.6Mb
sub-directories of 1Mb or more:
data 6.0Mb
doc 1.4Mb
cutpointr
- Version: 1.2.0
- GitHub: https://github.com/thie1e/cutpointr
- Source code: https://github.com/cran/cutpointr
- Date/Publication: 2024-12-10 22:50:02 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "cutpointr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cutpointr)
>
> test_check("cutpointr")
[ FAIL 105 | WARN 14 | SKIP 0 | PASS 337 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
class(tempplot5) not identical to c("gg", "ggplot").
Lengths differ: 5 is not 2
Backtrace:
▆
1. └─cutpointr (local) test_ggplot_functions(cp, do_plot_metric = FALSE) at test-cutpointr.R:1156:5
2. └─testthat::expect_identical(class(tempplot5), c("gg", "ggplot")) at test-cutpointr.R:22:5
[ FAIL 105 | WARN 14 | SKIP 0 | PASS 337 ]
Error: Test failures
Execution halted
```
cvms
- Version: 1.7.0
- GitHub: https://github.com/ludvigolsen/cvms
- Source code: https://github.com/cran/cvms
- Date/Publication: 2025-03-07 11:30:07 UTC
- Number of recursive dependencies: 152
Run revdepcheck::cloud_details(, "cvms") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cvms)
>
> if (require("xpectr")) {
- test_check("cvms")
- }
Loading required package: xpectr
...
names for target but not for current
── Failure ('test_plotting_functions.R:359:3'): plot_confusion_matrix() with sum tiles, class order, and intensity_by percentage ──
labels not equal to list(...).
Attributes: < names for target but not for current >
Attributes: < Length mismatch: comparison on first 0 components >
Length mismatch: comparison on first 4 components
[ FAIL 15 | WARN 0 | SKIP 71 | PASS 3602 ]
Error: Test failures
Execution halted
```
cylcop
- Version: 0.2.0
- GitHub: https://github.com/r-lib/devtools
- Source code: https://github.com/cran/cylcop
- Date/Publication: 2022-10-29 22:00:21 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "cylcop") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘cylcop-Ex.R’ failed
The error most likely occurred in:
Name: plot_circ_hist
Title: Circular Histogram of Turn Angles
Aliases: plot_circ_hist
** Examples
set.seed(123)
...
23. │ └─l$compute_geom_2(d, theme = plot@theme)
24. │ └─ggplot2 (local) compute_geom_2(..., self = self)
25. │ └─self$geom$use_defaults(...)
26. │ └─ggplot2 (local) use_defaults(..., self = self)
27. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
28. │ └─vctrs::list_sizes(x)
29. └─vctrs:::stop_scalar_type(<fn>(<expression>), "x$label", <env>)
30. └─vctrs:::stop_vctrs(...)
31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) gammamix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
...
checkRd: (-1) vonmisesmix.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vonmisesmix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
D2MCS
- Version: 1.0.1
- GitHub: https://github.com/drordas/D2MCS
- Source code: https://github.com/cran/D2MCS
- Date/Publication: 2022-08-23 11:40:02 UTC
- Number of recursive dependencies: 178
Run revdepcheck::cloud_details(, "D2MCS") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘test_all.R’
Running the tests in ‘tests/test_all.R’ failed.
Complete output:
> testthat::test_check("D2MCS")
Loading required package: D2MCS
[ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• On CRAN (2): 'test_D2MCS.R:129:3', 'test_D2MCS.R:213:3'
• {ranger} is not installed (13): 'test_D2MCS.R:411:3',
...
── Failure ('test_clustering.strategies.TypeBasedStrategy.R:226:3'): TypeBasedStrategy works ──
c("gg", "ggplot") not equal to class(strategyNoReal$plot()).
Lengths differ: 2 is not 5
── Failure ('test_clustering.strategies.TypeBasedStrategy.R:234:3'): TypeBasedStrategy works ──
c("gg", "ggplot") not equal to class(strategyNoBinary$plot()).
Lengths differ: 2 is not 5
[ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ]
Error: Test failures
Execution halted
```
dabestr
- Version: 2025.3.14
- GitHub: https://github.com/ACCLAB/dabestr
- Source code: https://github.com/cran/dabestr
- Date/Publication: 2025-02-26 12:50:02 UTC
- Number of recursive dependencies: 82
Run revdepcheck::cloud_details(, "dabestr") for more info
Newly broken
- checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
• 001_plotter/two-groups-unpaired-mean-diff-colour-float-true.svg
• 001_plotter/two-groups-unpaired-mean-diff-float-false.svg
• 001_plotter/two-groups-unpaired-mean-diff-float-true.svg
• 002_forest_plot/deltadelta-forest-plot-mean-diff.svg
• 002_forest_plot/deltadelta-forest-plot-with-plot-kwargs.svg
• 002_forest_plot/minimeta-forest-plot-mean-diff.svg
• 002_forest_plot/minimeta-forest-plot-median-diff.svg
• 002_forest_plot/minimeta-forest-plot-with-plot-kwargs.svg
Error: Test failures
Execution halted
daiquiri
- Version: 1.1.1
- GitHub: https://github.com/ropensci/daiquiri
- Source code: https://github.com/cran/daiquiri
- Date/Publication: 2023-07-18 16:50:09 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "daiquiri") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(daiquiri)
>
> test_check("daiquiri")
Quitting from report_htmldoc.Rmd:466-528 [daiquiri-individual-fields]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
...
36. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 4 | WARN 0 | SKIP 8 | PASS 472 ]
Deleting unused snapshots:
• aggregate_data/test_[ALL_FIELDS_COMBINED].csv
• aggregate_data/test_[DUPLICATES].csv
• aggregate_data/test_col1.csv
• aggregate_data/test_col2.csv
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘daiquiri.Rmd’ using rmarkdown
DAISIEprep
- Version: 1.0.0
- GitHub: https://github.com/joshwlambert/DAISIEprep
- Source code: https://github.com/cran/DAISIEprep
- Date/Publication: 2024-12-18 00:20:02 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "DAISIEprep") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(DAISIEprep)
>
> test_check("DAISIEprep")
[ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]
══ Skipped tests (14) ══════════════════════════════════════════════════════════
...
── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ───
plot_phylod(phylod = phylod, node_pies = FALSE) produced warnings.
── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──
plot_phylod(phylod = phylod, node_pies = TRUE) produced warnings.
── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──
plot_phylod(phylod = phylod, node_pies = TRUE) produced warnings.
[ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]
Error: Test failures
Execution halted
```
daltoolbox
- Version: 1.2.707
- GitHub: https://github.com/cefet-rj-dal/daltoolbox
- Source code: https://github.com/cran/daltoolbox
- Date/Publication: 2025-05-13 06:20:13 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "daltoolbox") for more info
Newly broken
- checking whether package ‘daltoolbox’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘daltoolbox’
See ‘/tmp/workdir/daltoolbox/new/daltoolbox.Rcheck/00install.out’ for details.
dams
- Version: 0.3.0
- GitHub: https://github.com/jsta/dams
- Source code: https://github.com/cran/dams
- Date/Publication: 2020-05-20 16:00:03 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "dams") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘dams.Rmd’ using rmarkdown
In both
- checking data for non-ASCII characters ... NOTE
Note: found 5 marked UTF-8 strings
Deducer
- Version: 0.9-0
- GitHub: NA
- Source code: https://github.com/cran/Deducer
- Date/Publication: 2025-05-07 13:50:06 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "Deducer") for more info
Newly broken
- checking whether package ‘Deducer’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘Deducer’
See ‘/tmp/workdir/Deducer/new/Deducer.Rcheck/00install.out’ for details.
deeptime
- Version: 2.1.0
- GitHub: https://github.com/willgearty/deeptime
- Source code: https://github.com/cran/deeptime
- Date/Publication: 2024-10-25 23:30:02 UTC
- Number of recursive dependencies: 195
Run revdepcheck::cloud_details(, "deeptime") for more info
Newly broken
- checking whether package ‘deeptime’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘deeptime’ ...
** package ‘deeptime’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
...
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘deeptime’:
.onLoad failed in loadNamespace() for 'deeptime', details:
call: NULL
error: <ggplot2::element_text> object properties are invalid:
- @hjust must be <NULL>, <integer>, or <double>, not <logical>
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/deeptime’
CRAN
* installing *source* package ‘deeptime’ ...
** package ‘deeptime’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deeptime)
dendextend
- Version: 1.19.0
- GitHub: https://github.com/talgalili/dendextend
- Source code: https://github.com/cran/dendextend
- Date/Publication: 2024-11-15 10:40:06 UTC
- Number of recursive dependencies: 128
Run revdepcheck::cloud_details(, "dendextend") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> library(dendextend)
Welcome to dendextend version 1.19.0
Type citation('dendextend') for how to cite the package.
...
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ggdend.R:168:4'): ggplot doesn't have warnings for dendrograms ──
names(ggplot_build(g)) not identical to c("data", "layout", "plot").
target is NULL, current is character
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ]
Error: Test failures
Execution halted
```
In both
-
checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'ggdendro', 'dendroextras', 'Hmisc', 'WGCNA', 'moduleColor',
'distory', 'phangorn', 'zoo'
-
checking installed package size ... NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
doc 5.8Mb
-
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘WGCNA’, ‘dendroextras’, ‘moduleColor’, ‘distory’, ‘phangorn’, ‘ggdendro’, ‘zoo’
densityratio
- Version: 0.2.0
- GitHub: https://github.com/thomvolker/densityratio
- Source code: https://github.com/cran/densityratio
- Date/Publication: 2025-05-19 13:30:05 UTC
- Number of recursive dependencies: 64
Run revdepcheck::cloud_details(, "densityratio") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
── Failure ('test-ulsif.R:78:3'): multidimensional ULSIF estimation, prediction works ──
plot_univariate(...) has type 'object', not 'list'.
── Failure ('test-ulsif.R:83:3'): multidimensional ULSIF estimation, prediction works ──
plot_univariate(...) has type 'object', not 'list'.
── Failure ('test-lhss.R:29:3'): multidimensional lhss estimation, prediction and plotting works ──
suppressWarnings(plot(dr)) has type 'object', not 'list'.
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 270 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 11.6Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 8.9Mb
diceR
- Version: 3.0.0
- GitHub: https://github.com/AlineTalhouk/diceR
- Source code: https://github.com/cran/diceR
- Date/Publication: 2025-02-05 09:40:01 UTC
- Number of recursive dependencies: 151
Run revdepcheck::cloud_details(, "diceR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-graphs.R:18:3'): graph_cdf object can have added/modified ggplot layers ──
isTRUE(all.equal(p1, p2)) is not FALSE
actual: TRUE
expected: FALSE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 113 ]
Error: Test failures
Execution halted
```
DImodelsVis
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/DImodelsVis
- Date/Publication: 2024-02-26 14:10:15 UTC
- Number of recursive dependencies: 112
Run revdepcheck::cloud_details(, "DImodelsVis") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘DImodelsVis-Ex.R’ failed
The error most likely occurred in:
Name: conditional_ternary
Title: Conditional ternary diagrams
Aliases: conditional_ternary
** Examples
library(DImodels)
...
14. │ └─base::withCallingHandlers(...)
15. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
16. └─l$compute_position(d, layout)
17. └─ggplot2 (local) compute_position(..., self = self)
18. └─self$position$use_defaults(data, self$aes_params)
19. └─ggplot2 (local) use_defaults(..., self = self)
20. └─ggplot2:::check_aesthetics(new, nrow(data))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘DImodelsVis-with-complex-models.Rmd’ using rmarkdown
directlabels
- Version: 2025.5.20
- GitHub: https://github.com/tdhock/directlabels
- Source code: https://github.com/cran/directlabels
- Date/Publication: 2025-05-20 10:50:02 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "directlabels") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘examples.Rmd’ using knitr
DiSCos
- Version: 0.1.1
- GitHub: https://github.com/Davidvandijcke/DiSCos
- Source code: https://github.com/cran/DiSCos
- Date/Publication: 2024-07-23 03:30:03 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "DiSCos") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...expected`: TRUE
── Failure ('test-DiSCoTEA.R:142:3'): cdfDiff works ────────────────────────────
typeof(discot$plot) == "list" is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 8 | WARN 2 | SKIP 1 | PASS 107 ]
Error: Test failures
Execution halted
```
distributions3
- Version: 0.2.2
- GitHub: https://github.com/alexpghayes/distributions3
- Source code: https://github.com/cran/distributions3
- Date/Publication: 2024-09-16 16:20:02 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "distributions3") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(distributions3)
Attaching package: 'distributions3'
The following object is masked from 'package:stats':
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot.R:50:3'): ggplot2 implementation works ──────────────────
print(gg1) produced warnings.
── Failure ('test-plot.R:56:3'): ggplot2 implementation works ──────────────────
print(gg3) produced warnings.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 2766 ]
Error: Test failures
Execution halted
```
dittoViz
- Version: 1.0.3
- GitHub: https://github.com/dtm2451/dittoViz
- Source code: https://github.com/cran/dittoViz
- Date/Publication: 2025-02-25 18:30:02 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "dittoViz") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘dittoViz-Ex.R’ failed
The error most likely occurred in:
Name: barPlot
Title: Outputs a stacked bar plot to show the percent composition of
samples, groups, clusters, or other groupings
Aliases: barPlot
** Examples
...
15 3 D 12 32 0.3750000
16 4 D 8 32 0.2500000
through hovering the cursor over the relevant parts of the plot
if (requireNamespace("plotly", quietly = TRUE)) {
+ barPlot(example_df, "clustering", group.by = "groups",
+ do.hover = TRUE)
+ }
Error in pm[[2]] : subscript out of bounds
Calls: barPlot -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dittoViz)
Loading required package: ggplot2
> test_check("dittoViz")
Picking joint bandwidth of 11.2
Picking joint bandwidth of 11.2
Picking joint bandwidth of 11.2
...
6. └─dittoViz:::.yPlot_add_data_y_direction(...)
7. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles)
8. └─ggplot2:::check_numeric(draw_quantiles)
9. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
- └─ggplot2:::stop_input_type(...)
- └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 47 | WARN 19 | SKIP 0 | PASS 199 ]
Error: Test failures
Execution halted
```
dndR
- Version: 3.0.0
- GitHub: https://github.com/njlyon0/dndR
- Source code: https://github.com/cran/dndR
- Date/Publication: 2025-04-02 18:00:02 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "dndR") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...expected[2:2]: "ggplot"
── Failure ('test-probability_plot.R:22:3'): Outputs are as expected ───────────
class(my_plot) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 102 ]
Error: Test failures
Execution halted
```
duke
- Version: 0.0.3
- GitHub: https://github.com/aidangildea/duke
- Source code: https://github.com/cran/duke
- Date/Publication: 2023-12-15 21:50:16 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "duke") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
- │ └─testthat:::expect_condition_matching(...)
- │ └─testthat:::quasi_capture(...)
- │ ├─testthat (local) .capture(...)
- │ │ └─base::withCallingHandlers(...)
- │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
- └─testthat::expect_equal(ggplot2::layer_data(p3)$fill[9], "#B5B5B5")
[ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘duke.Rmd’ using rmarkdown
easyalluvial
- Version: 0.3.2
- GitHub: https://github.com/erblast/easyalluvial
- Source code: https://github.com/cran/easyalluvial
- Date/Publication: 2023-12-07 13:40:06 UTC
- Number of recursive dependencies: 148
Run revdepcheck::cloud_details(, "easyalluvial") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(easyalluvial)
>
> test_check("easyalluvial")
[ FAIL 3 | WARN 6 | SKIP 18 | PASS 41 ]
══ Skipped tests (18) ══════════════════════════════════════════════════════════
...
• plot_marginal_histograms/mod-num-num.svg
• plot_marginal_histograms/mod-num-pred-train.svg
• plot_marginal_histograms/plot-hist-long-cat-fill.svg
• plot_marginal_histograms/plot-hist-long-cat.svg
• plot_marginal_histograms/plot-hist-long-num-has-fill.svg
• plot_marginal_histograms/plot-hist-long-num-is-fill.svg
• plot_marginal_histograms/plot-hist-long-num.svg
• plot_marginal_histograms/plot-hist-wide-num.svg
Error: Test failures
Execution halted
```
easysurv
- Version: 2.0.1
- GitHub: https://github.com/Maple-Health-Group/easysurv
- Source code: https://github.com/cran/easysurv
- Date/Publication: 2024-06-21 10:30:06 UTC
- Number of recursive dependencies: 152
Run revdepcheck::cloud_details(, "easysurv") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘easysurv-Ex.R’ failed
The error most likely occurred in:
Name: get_km
Title: Generate Kaplan-Meier estimates
Aliases: get_km
** Examples
km_results <- get_km(
...
Poor Poor 228 145 3.101736 0.1772520 2.183562 1.978082 2.619178
Median follow-up
Good 4.452055
Medium 4.712329
Poor 4.115068
Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = "{n.risk}", :
argument "risktable_height" is missing, with no default
Calls: ... ggsurvfit_build -> -> .construct_risktable
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘easysurv.Rmd’ using rmarkdown
Quitting from easysurv.Rmd:148-157 [km]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in .construct_risktable():
! argument "risktable_height" is missing, with no default
Backtrace:
...
Error: processing vignette 'easysurv.Rmd' failed with diagnostics:
argument "risktable_height" is missing, with no default
--- failed re-building ‘easysurv.Rmd’
SUMMARY: processing the following file failed:
‘easysurv.Rmd’
Error: Vignette re-building failed.
Execution halted
```
ecocbo
- Version: 0.12.0
- GitHub: NA
- Source code: https://github.com/cran/ecocbo
- Date/Publication: 2024-08-21 08:00:02 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "ecocbo") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
|======================================================================| 100%
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot_power.R:5:3'): plots are plotted ────────────────────────
plot_power(epiBetaR, n = 4, m = 4, method = "power") has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
```
EGM
- Version: 0.1.0
- GitHub: https://github.com/shah-in-boots/EGM
- Source code: https://github.com/cran/EGM
- Date/Publication: 2024-05-23 16:10:05 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "EGM") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(EGM)
Loading required package: vctrs
Loading required package: data.table
> EGM::set_wfdb_path("/usr/local/bin")
>
> test_check("EGM")
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ggm.R:63:2'): theming works ──────────────────────────────────
g$labels$x (actual) not equal to "sample" (expected`).
actual is NULL
expected is a character vector ('sample')
[ FAIL 1 | WARN 9 | SKIP 19 | PASS 43 ]
Error: Test failures
Execution halted
```
eks
- Version: 1.1.0
- GitHub: NA
- Source code: https://github.com/cran/eks
- Date/Publication: 2025-05-18 17:30:02 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "eks") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.scale_rem:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
ENMTools
- Version: 1.1.2
- GitHub: NA
- Source code: https://github.com/cran/ENMTools
- Date/Publication: 2024-01-16 12:50:11 UTC
- Number of recursive dependencies: 285
Run revdepcheck::cloud_details(, "ENMTools") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ENMTools)
Loading required package: dismo
Loading required package: raster
Loading required package: sp
>
> test_check("ENMTools")
...actual: FALSEexpected`: TRUE
Backtrace:
▆
- └─ENMTools (local) expect_enmtools_model(cyreni.glm.raster2) at test_ENMTools.R:249:3
- └─testthat::expect_true(...) at test_ENMTools.R:66:3
[ FAIL 9 | WARN 0 | SKIP 3 | PASS 167 ]
Error: Test failures
Execution halted
```
epiCleanr
- Version: 0.2.0
- GitHub: https://github.com/truenomad/epiCleanr
- Source code: https://github.com/cran/epiCleanr
- Date/Publication: 2023-09-28 12:20:05 UTC
- Number of recursive dependencies: 128
Run revdepcheck::cloud_details(, "epiCleanr") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘epiCleanr-Ex.R’ failed
The error most likely occurred in:
Name: handle_outliers
Title: Detect and Handle Outliers in Dataset
Aliases: handle_outliers
** Examples
...
13. │ └─ggplot2 (local) FUN(X[[i]], ...)
14. │ └─scale$map_df(df = df)
15. │ └─ggplot2 (local) map_df(..., self = self)
16. │ └─base::lapply(aesthetics, function(j) self$map(df[[j]]))
17. │ └─ggplot2 (local) FUN(X[[i]], ...)
18. │ └─self$map(df[[j]])
19. │ └─ggplot2 (local) map(..., self = self)
20. │ └─vctrs::vec_slice<-(*tmp*, is.na(x), value = na_value)
21. └─rlang::cnd_signal(x)
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 2.9Mb
help 2.5Mb
epiphy
- Version: 0.5.0
- GitHub: https://github.com/chgigot/epiphy
- Source code: https://github.com/cran/epiphy
- Date/Publication: 2023-11-16 11:20:10 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "epiphy") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘epiphy-Ex.R’ failed
The error most likely occurred in:
Name: clump
Title: Regroup observational data into even clumps of individuals.
Aliases: clump clump.intensity
** Examples
my_incidence <- incidence(tomato_tswv$field_1929)
...
21. │ └─ggplot2 (local) setup_params(...)
22. │ └─ggplot2:::make_summary_fun(...)
23. │ └─rlang::as_function(fun.data)
24. │ └─base::get(x, envir = env, mode = "function")
25. └─base::.handleSimpleError(...)
26. └─rlang (local) h(simpleError(msg, call))
27. └─handlers[1L]
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
Execution halted
```
epos
- Version: 1.1
- GitHub: https://github.com/bernd-mueller/epos
- Source code: https://github.com/cran/epos
- Date/Publication: 2024-03-15 10:10:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "epos") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(epos)
>
> test_check("epos")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
[1] 1 - 11 == -10
Backtrace:
▆
1. └─testthat::expect_that(length(tanimotobaseline), equals(11)) at test_createTanimotoBaseline.R:47:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
Error: Test failures
Execution halted
```
In both
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘testthat’
All declared Imports should be used.
-
checking data for non-ASCII characters ... NOTE
Note: found 15 marked UTF-8 strings
EQUALSTATS
- Version: 0.5.0
- GitHub: NA
- Source code: https://github.com/cran/EQUALSTATS
- Date/Publication: 2024-09-23 08:30:02 UTC
- Number of recursive dependencies: 128
Run revdepcheck::cloud_details(, "EQUALSTATS") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘EQUALSTATS-Ex.R’ failed
The error most likely occurred in:
Name: function.Survival_Analysis
Title: Perform Survival Analysis
Aliases: function.Survival_Analysis
** Examples
Create simulated data
...
rv$second_menu_choice <- NA
rv$entry[[1]] <- "Admission to care home"
rv$entry[[2]] <- "Follow-up"
rv$entry[[3]] <- "Treatment"
Final function
Results <- function.Survival_Analysis(Predefined_lists, rv)
Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = c("{n.risk}", :
argument "risktable_height" is missing, with no default
Calls: function.Survival_Analysis
Execution halted
```
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘lmerTest’
equatiomatic
- Version: 0.3.6
- GitHub: https://github.com/datalorax/equatiomatic
- Source code: https://github.com/cran/equatiomatic
- Date/Publication: 2025-03-10 16:50:09 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "equatiomatic") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘colors.Rmd’ using rmarkdown
--- finished re-building ‘colors.Rmd’
--- re-building ‘equatiomatic.Rmd’ using rmarkdown
--- finished re-building ‘equatiomatic.Rmd’
--- re-building ‘forecast-arima.Rmd’ using rmarkdown
--- finished re-building ‘forecast-arima.Rmd’
--- re-building ‘lme4-lmer.Rmd’ using rmarkdown
--- finished re-building ‘lme4-lmer.Rmd’
--- re-building ‘plotting-integration.Rmd’ using rmarkdown
```
errors
- Version: 0.4.3
- GitHub: https://github.com/r-quantities/errors
- Source code: https://github.com/cran/errors
- Date/Publication: 2025-01-18 18:10:05 UTC
- Number of recursive dependencies: 65
Run revdepcheck::cloud_details(, "errors") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘errors-Ex.R’ failed
The error most likely occurred in:
Name: geom_errors
Title: Errorbars for 'errors' objects
Aliases: geom_errors
** Examples
if (requireNamespace("ggplot2", quietly=TRUE)) {
...
23. │ └─self$draw_panel(data, panel_params, coord, width = 0.05, height = 0.05)
24. │ └─errors (local) draw_panel(...)
25. │ ├─base::append(...)
26. │ └─ggplot2::GeomErrorbarh$draw_panel(...)
27. └─base::.handleSimpleError(...)
28. └─rlang (local) h(simpleError(msg, call))
29. └─handlers[1L]
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘rjournal.Rmd’ using rmarkdown
Quitting from rjournal.Rmd:252-272 [plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rjournal.Rmd' failed with diagnostics:
...
ℹ Error occurred in the 2nd layer.
Caused by error in draw_panel():
! unused argument (height = NULL)
--- failed re-building ‘rjournal.Rmd’
SUMMARY: processing the following file failed:
‘rjournal.Rmd’
Error: Vignette re-building failed.
Execution halted
```
eudract
- Version: 1.0.4
- GitHub: https://github.com/shug0131/eudraCT
- Source code: https://github.com/cran/eudract
- Date/Publication: 2025-03-20 17:20:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "eudract") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘eudract-Ex.R’ failed
The error most likely occurred in:
Name: dot_plot
Title: creates a dot-plot of safety data showing the absolute and
relative risks
Aliases: dot_plot
** Examples
...
$reference
[1] "Control"
fig <- dot_plot(safety_statistics, type="non_serious", base=4)
fig
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eudract)
>
> test_check("eudract")
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 75 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
...
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 75 ]
Deleting unused snapshots:
• dotplot/dotplot-1group.svg
• dotplot/dotplot-3groups.svg
• dotplot/dotplot-ref-rr.svg
• dotplot/dotplot-ref.svg
• dotplot/dotplot.svg
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘eudract.Rmd’ using rmarkdown
--- finished re-building ‘eudract.Rmd’
--- re-building ‘standard_reporting.Rmd’ using rmarkdown
Quitting from standard_reporting.Rmd:65-67 [dotplot_sae]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
...
Can't find method for generic &(e1, e2):
- e1:
- e2:
--- failed re-building ‘standard_reporting.Rmd’
SUMMARY: processing the following file failed:
‘standard_reporting.Rmd’
Error: Vignette re-building failed.
Execution halted
```
eventstudyr
- Version: 1.1.3
- GitHub: https://github.com/JMSLab/eventstudyr
- Source code: https://github.com/cran/eventstudyr
- Date/Publication: 2024-03-04 15:00:02 UTC
- Number of recursive dependencies: 97
Run revdepcheck::cloud_details(, "eventstudyr") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eventstudyr)
>
> test_check("eventstudyr")
Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
...expectedis a character vector ('ci_lower')
── Failure ('test-EventStudyPlot.R:128:5'): confidence intervals are appropriately present or absent ──
p_ci$labels$ymax (actual) not equal to "ci_upper" (expected`).
actual is NULL
expected is a character vector ('ci_upper')
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 258 ]
Error: Test failures
Execution halted
```
EvoPhylo
- Version: 0.3.2
- GitHub: https://github.com/tiago-simoes/EvoPhylo
- Source code: https://github.com/cran/EvoPhylo
- Date/Publication: 2022-11-03 17:00:02 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "EvoPhylo") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘EvoPhylo-Ex.R’ failed
The error most likely occurred in:
Name: plot_treerates_sgn
Title: Plot Bayesian evolutionary tree with rate thresholds for
selection mode
Aliases: plot_treerates_sgn
** Examples
...
Warning: aes_string() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the ggtree package.
Please report the issue at https://github.com/YuLab-SMU/ggtree/issues.
Error: .onLoad failed in loadNamespace() for 'deeptime', details:
call: NULL
error: object properties are invalid:
- @hjust must be , , or , not
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘char-part.Rmd’ using rmarkdown
Quitting from char-part.Rmd:28-30 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'char-part.Rmd' failed with diagnostics:
The package "deeptime" (>= 0.2.0) is required.
...
Error: processing vignette 'rates-selection_MrBayes.Rmd' failed with diagnostics:
The package "deeptime" (>= 0.2.0) is required.
--- failed re-building ‘rates-selection_MrBayes.Rmd’
SUMMARY: processing the following files failed:
‘char-part.Rmd’ ‘fbd-params.Rmd’ ‘offset_handling.Rmd’
‘rates-selection_BEAST2.Rmd’ ‘rates-selection_MrBayes.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 6.8Mb
sub-directories of 1Mb or more:
data 2.5Mb
doc 1.6Mb
extdata 2.4Mb
explainer
- Version: 1.0.2
- GitHub: https://github.com/PERSIMUNE/explainer
- Source code: https://github.com/cran/explainer
- Date/Publication: 2024-09-30 17:30:02 UTC
- Number of recursive dependencies: 184
Run revdepcheck::cloud_details(, "explainer") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘explainer-Ex.R’ failed
The error most likely occurred in:
Name: eDecisionCurve
Title: Decision Curve Plot
Aliases: eDecisionCurve
** Examples
library("explainer")
...
mylrn$train(maintask, splits$train)
myplot <- eDecisionCurve(
+ task = maintask,
+ trained_model = mylrn,
+ splits = splits,
+ seed = seed
+ )
Error in pm[[2]] : subscript out of bounds
Calls: eDecisionCurve -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ggpmisc’
All declared Imports should be used.
ez
- Version: 4.4-0
- GitHub: https://github.com/mike-lawrence/ez
- Source code: https://github.com/cran/ez
- Date/Publication: 2016-11-02 18:17:31
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "ez") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ez-Ex.R’ failed
The error most likely occurred in:
Name: ezPlot
Title: Plot data from a factorial experiment
Aliases: ezPlot
** Examples
Read in the ANT data (see ?ANT).
...
Backtrace:
▆
1. └─ez::ezPlot(...)
2. ├─base::eval(parse(text = p))
3. │ └─base::eval(parse(text = p))
4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y")
5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)")
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
ezEDA
- Version: 0.1.1
- GitHub: https://github.com/kviswana/ezEDA
- Source code: https://github.com/cran/ezEDA
- Date/Publication: 2021-06-29 04:40:10 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "ezEDA") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ezEDA)
>
> test_check("ezEDA")
[ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Error ('test_two_measures_relationship.R:19:3'): y axis is labeled 'hwy' ────
Error in expect_match(p$labels$y, "hwy"): is.character(act$val) is not TRUE
Backtrace:
▆
1. └─testthat::expect_match(p$labels$y, "hwy") at test_two_measures_relationship.R:19:3
2. └─base::stopifnot(is.character(act$val))
[ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ]
Error: Test failures
Execution halted
```
EZFragility
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/EZFragility
- Date/Publication: 2025-04-10 14:40:09 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "EZFragility") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘EZFragility-Ex.R’ failed
The error most likely occurred in:
Name: plotFragHeatmap
Title: Visualization functions (raw signal, fragility matrix)
Aliases: plotFragHeatmap plotFragQuantile plotFragDistribution
** Examples
...
precomputed fragility object
data("pt01Frag")
plot the fragility heatmap
plotFragHeatmap(frag = pt01Frag, sozIndex = sozIndex)
Warning: Ignoring unknown labels:
• size : "2"
Error: object must be an , not a S3
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘Intro_to_EZFragility.Rmd’ using rmarkdown
ezplot
- Version: 0.7.13
- GitHub: NA
- Source code: https://github.com/cran/ezplot
- Date/Publication: 2024-01-28 11:30:05 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "ezplot") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ezplot-Ex.R’ failed
The error most likely occurred in:
Name: variable_plot
Title: variable_plot
Aliases: variable_plot
** Examples
suppressPackageStartupMessages(library(tsibble))
library(tsibbledata)
variable_plot(ansett, "Week", "Passengers", facet_x = "Class", yoy = TRUE)
Error: object properties are invalid:
- @linewidth must be , , or , not
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ezplot)
> suppressPackageStartupMessages(library(tsibble))
>
> test_check("ezplot")
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ]
...
2. ├─ggplot2::theme(...)
3. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
4. │ └─base::mget(args, envir = env)
5. └─ggplot2::element_rect(fill = NA, colour = NA, linewidth = NA)
6. └─S7::new_object(...)
7. └─S7::validate(object, recursive = !parent_validated)
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘bar_plot.Rmd’ using rmarkdown
fabletools
- Version: 0.5.0
- GitHub: https://github.com/tidyverts/fabletools
- Source code: https://github.com/cran/fabletools
- Date/Publication: 2024-09-17 07:30:02 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "fabletools") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-graphics.R:327:3'): autoplot_dcmp_ts() ───────────────────────
print(p) produced warnings.
── Failure ('test-graphics.R:346:3'): autoplot_dcmp_ts() ───────────────────────
print(p) produced warnings.
[ FAIL 2 | WARN 5 | SKIP 1 | PASS 292 ]
Error: Test failures
Execution halted
```
fairmodels
- Version: 1.2.1
- GitHub: https://github.com/ModelOriented/fairmodels
- Source code: https://github.com/cran/fairmodels
- Date/Publication: 2022-08-23 19:50:06 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "fairmodels") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘fairmodels-Ex.R’ failed
The error most likely occurred in:
Name: fairness_heatmap
Title: Fairness heatmap
Aliases: fairness_heatmap
** Examples
...
[32m Fairness object created succesfully [39m
fh <- fairness_heatmap(fobject)
plot(fh)
Error in rep(yes, length.out = len) :
attempt to replicate an object of type 'object'
Calls: plot -> plot.fairness_heatmap -> ifelse
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fairmodels)
>
>
> test_check("fairmodels")
Welcome to DALEX (version: 2.4.3).
Find examples and detailed introduction at: http://ema.drwhy.ai/
...
5. │ └─base::class(object) %in% class
6. ├─fairmodels::plot_fairmodels(fc, type = "fairness_heatmap")
7. └─fairmodels:::plot_fairmodels.fairness_object(fc, type = "fairness_heatmap")
8. └─fairmodels:::plot_fairmodels.default(x, type, ...)
9. └─fairmodels:::plot.fairness_heatmap(fairness_heatmap(x, ...))
- └─base::ifelse(...)
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 299 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘Advanced_tutorial.Rmd’ using rmarkdown
In both
- checking Rd files ... NOTE
checkRd: (-1) choose_metric.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) choose_metric.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) choose_metric.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) disparate_impact_remover.Rd:28: Lost braces
28 | pigeonholing. The number of pigeonholes is fixed and equal to min{101, unique(a)}, where a is vector with values for subgroup. So if some subgroup is not numerous and
| ^
...
checkRd: (-1) group_metric.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) group_metric.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) group_metric.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) group_metric.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) metric_scores.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) metric_scores.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
fairness
- Version: 1.2.2
- GitHub: https://github.com/kozodoi/fairness
- Source code: https://github.com/cran/fairness
- Date/Publication: 2021-04-14 15:00:02 UTC
- Number of recursive dependencies: 149
Run revdepcheck::cloud_details(, "fairness") for more info
Newly broken
- checking whether package ‘fairness’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fairness’
See ‘/tmp/workdir/fairness/new/fairness.Rcheck/00install.out’ for details.
faux
- Version: 1.2.2
- GitHub: https://github.com/debruine/faux
- Source code: https://github.com/cran/faux
- Date/Publication: 2025-01-15 09:10:01 UTC
- Number of recursive dependencies: 127
Run revdepcheck::cloud_details(, "faux") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘faux-Ex.R’ failed
The error most likely occurred in:
Name: norm2likert
Title: Convert normal to likert
Aliases: norm2likert
** Examples
...
2. └─plt$build()
3. └─private$addLimits(margThemed)
4. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish)
5. └─ggplot2::continuous_scale(...)
6. └─ggplot2:::check_continuous_limits(limits, call = call)
7. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE)
8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
9. └─ggplot2:::stop_input_type(...)
10. └─rlang::abort(message, ..., call = call, arg = arg)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(faux)
Welcome to faux. For support and examples visit:
https://debruine.github.io/faux/
- Get and set global package options with: faux_options()
...
class(p) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
Backtrace:
▆
1. └─global expect_equal(class(p), c("gg", "ggplot")) at test-plot_design.R:288:3
2. └─testthat::expect_equal(..., check.environment = FALSE)
[ FAIL 19 | WARN 0 | SKIP 22 | PASS 1351 ]
Error: Test failures
Execution halted
```
fChange
- Version: 2.0.0
- GitHub: NA
- Source code: https://github.com/cran/fChange
- Date/Publication: 2025-03-27 18:00:09 UTC
- Number of recursive dependencies: 206
Run revdepcheck::cloud_details(, "fChange") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...expected: "gg"
── Failure ('test-plot_qq.R:3:3'): QQ Plot ─────────────────────────────────────
class(tmp)[1] (actual) not equal to "gg" (expected`).
actual: "ggplot2::ggplot"
expected: "gg"
[ FAIL 13 | WARN 0 | SKIP 9 | PASS 177 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
data 2.0Mb
libs 3.5Mb
feasts
- Version: 0.4.1
- GitHub: https://github.com/tidyverts/feasts
- Source code: https://github.com/cran/feasts
- Date/Publication: 2024-09-25 23:40:02 UTC
- Number of recursive dependencies: 97
Run revdepcheck::cloud_details(, "feasts") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(feasts)
Loading required package: fabletools
>
> test_check("feasts")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
...
▆
1. ├─ggplot2::ggplot_build(p[[1]]) at test-graphics.R:194:3
2. ├─ggplot2:::ggplot_build.default(p[[1]])
3. │ └─ggplot2::build_ggplot(plot)
4. │ └─S7::S7_dispatch()
5. └─S7:::method_lookup_error("build_ggplot", <named list>)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
Error: Test failures
Execution halted
```
fec16
- Version: 0.1.4
- GitHub: https://github.com/baumer-lab/fec16
- Source code: https://github.com/cran/fec16
- Date/Publication: 2023-08-09 10:50:14 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "fec16") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘fec_vignette.Rmd’ using rmarkdown
In both
- checking data for non-ASCII characters ... NOTE
Note: found 20 marked UTF-8 strings
fitbitViz
- Version: 1.0.6
- GitHub: https://github.com/mlampros/fitbitViz
- Source code: https://github.com/cran/fitbitViz
- Date/Publication: 2024-02-08 09:30:02 UTC
- Number of recursive dependencies: 153
Run revdepcheck::cloud_details(, "fitbitViz") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fitbitViz)
>
> test_check("fitbitViz")
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
4. ├─ggplot2::theme(...)
5. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
6. │ └─base::mget(args, envir = env)
7. └─ggplot2::element_text(...)
8. └─S7::new_object(...)
9. └─S7::validate(object, recursive = !parent_validated)
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 4 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 4.0Mb
flextable
- Version: 0.9.9
- GitHub: https://github.com/davidgohel/flextable
- Source code: https://github.com/cran/flextable
- Date/Publication: 2025-05-31 09:40:02 UTC
- Number of recursive dependencies: 131
Run revdepcheck::cloud_details(, "flextable") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘flextable-Ex.R’ failed
The error most likely occurred in:
Name: gg_chunk
Title: 'ggplots' chunk wrapper
Aliases: gg_chunk
** Examples
library(data.table)
...
Loading required package: ggplot2
a flextable object.
col_keys: Species, gg
header has 1 row(s)
body has 3 row(s)
original dataset sample:
Error in format.default(unlist(xx), ...) :
c("Found no format() method for class \"ggplot2::ggplot\"", "Found no format() method for class \"ggplot\"", "Found no format() method for class \"ggplot2::gg\"", "Found no format() method for class \"S7_object\"", "Found no format() method for class \"gg\"")
Calls: ... format -> format.default -> lapply -> FUN -> format.default
Execution halted
```
flipr
- Version: 0.3.3
- GitHub: https://github.com/LMJL-Alea/flipr
- Source code: https://github.com/cran/flipr
- Date/Publication: 2023-08-23 09:00:02 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "flipr") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘alternative.Rmd’ using rmarkdown
--- finished re-building ‘alternative.Rmd’
--- re-building ‘exactness.Rmd’ using rmarkdown
Quitting from exactness.Rmd:141-177 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
...
6. ├─plotly::ggplotly(.)
7. └─plotly:::ggplotly.ggplot(.)
8. └─plotly::gg2list(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'exactness.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘exactness.Rmd’
--- re-building ‘flipr.Rmd’ using rmarkdown
```
In both
- checking installed package size ... NOTE
installed size is 11.2Mb
sub-directories of 1Mb or more:
doc 9.1Mb
libs 1.4Mb
fmf
- Version: 1.1.1
- GitHub: NA
- Source code: https://github.com/cran/fmf
- Date/Publication: 2020-09-03 07:32:12 UTC
- Number of recursive dependencies: 175
Run revdepcheck::cloud_details(, "fmf") for more info
Newly broken
- checking whether package ‘fmf’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fmf’
See ‘/tmp/workdir/fmf/new/fmf.Rcheck/00install.out’ for details.
In both
- checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
foqat
- Version: 2.0.8.2
- GitHub: https://github.com/tianshu129/foqat
- Source code: https://github.com/cran/foqat
- Date/Publication: 2023-09-30 06:10:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "foqat") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Air_Quality.Rmd’ using rmarkdown
--- finished re-building ‘Air_Quality.Rmd’
--- re-building ‘Atmospheric_Radiation.Rmd’ using rmarkdown
--- finished re-building ‘Atmospheric_Radiation.Rmd’
--- re-building ‘Basic_Functions.Rmd’ using rmarkdown
--- finished re-building ‘Basic_Functions.Rmd’
--- re-building ‘Particle_Size_Distribution.Rmd’ using rmarkdown
```
forestly
- Version: 0.1.2
- GitHub: https://github.com/Merck/forestly
- Source code: https://github.com/cran/forestly
- Date/Publication: 2025-01-10 16:20:14 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "forestly") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘forest-plot-static.Rmd’ using rmarkdown
forestPSD
- Version: 1.0.0
- GitHub: NA
- Source code: https://github.com/cran/forestPSD
- Date/Publication: 2024-11-11 16:50:05 UTC
- Number of recursive dependencies: 44
Run revdepcheck::cloud_details(, "forestPSD") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘forestPSD-Ex.R’ failed
The error most likely occurred in:
Name: psdfun
Title: Regression analysis for survival curves.
Aliases: psdfun
** Examples
data(Npop)
...
16. │ └─l$compute_geom_2(d, theme = plot@theme)
17. │ └─ggplot2 (local) compute_geom_2(..., self = self)
18. │ └─self$geom$use_defaults(...)
19. │ └─ggplot2 (local) use_defaults(..., self = self)
20. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
21. │ └─vctrs::list_sizes(x)
22. └─vctrs:::stop_scalar_type(<fn>(<expression>), "x$label", <env>)
23. └─vctrs:::stop_vctrs(...)
24. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘ggplot2’ ‘reshape2’
All declared Imports should be used.
formods
- Version: 0.2.0
- GitHub: https://github.com/john-harrold/formods
- Source code: https://github.com/cran/formods
- Date/Publication: 2025-01-07 16:20:06 UTC
- Number of recursive dependencies: 187
Run revdepcheck::cloud_details(, "formods") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-FG_module.R:13:5'): FG -- Forcing builds of figures ──────────
class(ggplot2::ggplot_build(sess_res[["state"]][["FG"]][["figs"]][[fid]][["fobj"]])) (actual) not equal to "ggplot_built" (expected`).
actual: "ggplot2::ggplot_built" "ggplot_built" "ggplot2::gg" "S7_object"
expected: "ggplot_built"
[ FAIL 1 | WARN 32 | SKIP 0 | PASS 39 ]
Error: Test failures
Execution halted
```
fqar
- Version: 0.5.4
- GitHub: https://github.com/equitable-equations/fqar
- Source code: https://github.com/cran/fqar
- Date/Publication: 2024-10-06 18:00:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "fqar") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-species_profile_plot.R:21:3'): species_profile_plot works ────
class(p) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 365 ]
Error: Test failures
Execution halted
```
frailtyEM
- Version: 1.0.1
- GitHub: https://github.com/tbalan/frailtyEM
- Source code: https://github.com/cran/frailtyEM
- Date/Publication: 2019-09-22 13:00:10 UTC
- Number of recursive dependencies: 75
Run revdepcheck::cloud_details(, "frailtyEM") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘frailtyEM-Ex.R’ failed
The error most likely occurred in:
Name: summary.emfrail
Title: Summary for 'emfrail' objects
Aliases: summary.emfrail
** Examples
data("bladder")
...
filter
The following object is masked from ‘package:graphics’:
layout
ggplotly(pl2)
Error in pm[[2]] : subscript out of bounds
Calls: ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
-
checking re-building of vignette outputs ... WARNING
``
Error(s) in re-building vignettes:
--- re-building ‘frailtyEM_manual.Rnw’ using Sweave
Loading required package: survival
Loading required package: gridExtra
Warning:aes_string()was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms withaes().
ℹ See alsovignette("ggplot2-in-packages")` for more
information.
ℹ The deprecated feature was likely used in the frailtyEM
package.
...
l.179 \RequirePackage{grfext}\relax
^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘frailtyEM_manual.Rnw’
SUMMARY: processing the following file failed:
‘frailtyEM_manual.Rnw’
Error: Vignette re-building failed.
Execution halted
```
-
checking Rd files ... NOTE
checkRd: (-1) emfrail_control.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:55-57: Lost braces in \itemize; meant \describe ?
-
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
funcharts
- Version: 1.7.0
- GitHub: https://github.com/unina-sfere/funcharts
- Source code: https://github.com/cran/funcharts
- Date/Publication: 2025-03-17 17:30:02 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "funcharts") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘funcharts-Ex.R’ failed
The error most likely occurred in:
Name: control_charts_pca_mfd_real_time
Title: Real-time T2 and SPE control charts for multivariate functional
data
Aliases: control_charts_pca_mfd_real_time
** Examples
...
cclist <- control_charts_pca_mfd_real_time(
+ pca_list = pca_list,
+ components_list = 1:3,
+ mfdobj_x_test = mfdobj_x2_list)
plot_control_charts_real_time(cclist, 1)
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(funcharts)
Loading required package: robustbase
>
> test_check("funcharts")
[1] "The Fisher omnibus combining function is considered."
[1] "The Fisher omnibus combining function is considered."
...
- e1:
- e2:
Backtrace:
▆
- └─funcharts::plot_control_charts_real_time(cclist, 1) at test_phaseII.R:104:3
- └─S7:::Ops.S7_object(...)
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 111 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
R 1.5Mb
libs 3.4Mb
FunnelPlotR
- Version: 0.5.0
- GitHub: https://github.com/nhs-r-community/FunnelPlotR
- Source code: https://github.com/cran/FunnelPlotR
- Date/Publication: 2024-04-12 08:40:02 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "FunnelPlotR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘FunnelPlotR-Ex.R’ failed
The error most likely occurred in:
Name: funnel_plot
Title: Funnel plots for comparing institutional performance
Aliases: funnel_plot
** Examples
We will use the 'medpar' dataset from the 'COUNT' package.
...
Get predicted values for building ratio
medpar$prds<- predict(mod, type="response")
Draw plot, returning just the plot object
fp<-funnel_plot(medpar, denominator=prds, numerator=los,
+ group = provnum, limit=95, title="An example funnel plot")
Error in validate_funnel_plot(rtn) : Invalid ggplot object
Calls: funnel_plot -> validate_funnel_plot
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(FunnelPlotR)
>
> test_check("FunnelPlotR")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Error ('test-funnel_plot.R:7:3'): funnel_plot() works with input and returns expected list ──
Error in validate_funnel_plot(rtn): Invalid ggplot object
Backtrace:
▆
1. └─FunnelPlotR::funnel_plot(dt, num, denom, group) at test-funnel_plot.R:7:3
2. └─FunnelPlotR:::validate_funnel_plot(rtn)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘changing_funnel_plot_options.Rmd’ using rmarkdown
Quitting from changing_funnel_plot_options.Rmd:32-49 [dtsetup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in validate_funnel_plot():
! Invalid ggplot object
Backtrace:
...
▆
1. └─FunnelPlotR::funnel_plot(...)
2. └─FunnelPlotR:::validate_funnel_plot(rtn)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'changing_funnel_plot_options.Rmd' failed with diagnostics:
Invalid ggplot object
--- failed re-building ‘changing_funnel_plot_options.Rmd’
--- re-building ‘funnel_plots.Rmd’ using rmarkdown
```
gapfill
- Version: 0.9.6-1
- GitHub: https://github.com/florafauna/gapfill
- Source code: https://github.com/cran/gapfill
- Date/Publication: 2021-02-12 10:10:05 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "gapfill") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘run-all.R’
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
> test_check('gapfill')
Loading required package: gapfill
Loading required package: ggplot2
--> See ?Gapfill and https://doi.org/10.1109/TGRS.2017.2785240 <--
[ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
...
── Failure ('test-Image.R:10:4'): Image ────────────────────────────────────────
class(Image(unname(ndvi))) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-Image.R:11:4'): Image ────────────────────────────────────────
class(Image(ndvi, zlim = c(1, 2))) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
Error: Test failures
Execution halted
```
In both
-
checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'raster', 'doParallel', 'doMPI'
-
checking Rd files ... NOTE
checkRd: (-1) Gapfill.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:71-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ndvi.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:13: Lost braces in \itemize; meant \describe ?
gapminder
- Version: 1.0.0
- GitHub: https://github.com/jennybc/gapminder
- Source code: https://github.com/cran/gapminder
- Date/Publication: 2023-03-10 09:50:08 UTC
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "gapminder") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘gapminder-Ex.R’ failed
The error most likely occurred in:
Name: country_colors
Title: Gapminder color schemes.
Aliases: country_colors continent_colors
Keywords: datasets
** Examples
...
and is now defunct.
ℹ Please use the show.legend argument instead.
Backtrace:
▆
1. └─ggplot2::geom_line(lwd = 1, show_guide = FALSE)
2. └─ggplot2::layer(...)
3. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)")
4. └─lifecycle:::deprecate_stop0(msg)
5. └─rlang::cnd_signal(...)
Execution halted
```
genekitr
- Version: 1.2.8
- GitHub: https://github.com/GangLiLab/genekitr
- Source code: https://github.com/cran/genekitr
- Date/Publication: 2024-09-06 13:00:06 UTC
- Number of recursive dependencies: 196
Run revdepcheck::cloud_details(, "genekitr") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘genekitr-Ex.R’ failed
The error most likely occurred in:
Name: plotVenn
Title: Venn plot for groups of genes
Aliases: plotVenn
** Examples
k1 = requireNamespace("ComplexUpset",quietly = TRUE)
...
32. │ └─ggplot2 (local) method(merge_element, list(ggplot2::element, class_any))(...)
33. │ └─S7::props(old, idx)
34. │ └─S7::check_is_S7(object)
35. │ └─base::stop(msg, call. = FALSE)
36. └─base::.handleSimpleError(...)
37. └─rlang (local) h(simpleError(msg, call))
38. └─handlers[1L]
39. └─cli::cli_abort(...)
40. └─rlang::abort(...)
Execution halted
```
geneSLOPE
- Version: 0.38.2
- GitHub: https://github.com/psobczyk/geneSLOPE
- Source code: https://github.com/cran/geneSLOPE
- Date/Publication: 2023-08-16 09:12:37 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "geneSLOPE") for more info
Newly broken
- checking whether package ‘geneSLOPE’ can be installed ... WARNING
Found the following significant warnings:
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/tmp/workdir/geneSLOPE/new/geneSLOPE.Rcheck/00install.out’ for details.
geofacet
- Version: 0.2.1
- GitHub: https://github.com/hafen/geofacet
- Source code: https://github.com/cran/geofacet
- Date/Publication: 2023-11-30 08:00:11 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "geofacet") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.facet_geo_spec:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
In both
- checking data for non-ASCII characters ... NOTE
Note: found 646 marked UTF-8 strings
geoheatmap
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/geoheatmap
- Date/Publication: 2024-09-05 15:40:02 UTC
- Number of recursive dependencies: 102
Run revdepcheck::cloud_details(, "geoheatmap") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘geoheatmap.Rmd’ using rmarkdown
geomtextpath
- Version: 0.1.5
- GitHub: https://github.com/AllanCameron/geomtextpath
- Source code: https://github.com/cran/geomtextpath
- Date/Publication: 2025-01-14 17:40:02 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "geomtextpath") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘geomtextpath-Ex.R’ failed
The error most likely occurred in:
Name: geom_textsf
Title: Visualise sf objects with labels
Aliases: geom_textsf geom_labelsf
** Examples
ggplot(waterways) +
...
22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
23. │ └─self$draw_panel(...)
24. │ └─geomtextpath (local) draw_panel(...)
25. │ └─geomtextpath:::sf_textgrob(...)
26. └─base::.handleSimpleError(...)
27. └─rlang (local) h(simpleError(msg, call))
28. └─handlers[1L]
29. └─cli::cli_abort(...)
30. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(geomtextpath)
Loading required package: ggplot2
>
> test_check("geomtextpath")
[ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ]
...
expected is an expression vector
── Error ('test-sf.R:91:3'): We can make grobs from sf features ────────────────
Error in (x$boxlinewidth %||% defaults$linewidth[type_ind]) * 3.779528: non-numeric argument to binary operator
Backtrace:
▆
1. └─geomtextpath:::sf_textgrob(river, as_textbox = TRUE) at test-sf.R:91:3
[ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ]
Error: Test failures
Execution halted
```
gfoRmulaICE
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/gfoRmulaICE
- Date/Publication: 2024-12-02 12:50:08 UTC
- Number of recursive dependencies: 89
Run revdepcheck::cloud_details(, "gfoRmulaICE") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...expected[2:2]: "ggplot"
── Failure ('test_plot.R:534:5'): plot complicated scenario 3 - intervention-specific time options ──
class(plots) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 15 | WARN 176 | SKIP 0 | PASS 47 ]
Error: Test failures
Execution halted
```
gg1d
- Version: 0.1.0
- GitHub: https://github.com/selkamand/gg1d
- Source code: https://github.com/cran/gg1d
- Date/Publication: 2024-12-09 19:40:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "gg1d") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘gg1d-Ex.R’ failed
The error most likely occurred in:
Name: gg1d
Title: AutoPlot an entire data.frame
Aliases: gg1d
** Examples
path_gg1d <- system.file("example.csv", package = "gg1d")
...
31. │ └─base::lapply(...)
32. │ └─ggplot2 (local) FUN(X[[i]], ...)
33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
34. │ └─self$draw_panel(...)
35. └─base::.handleSimpleError(...)
36. └─rlang (local) h(simpleError(msg, call))
37. └─handlers[1L]
38. └─cli::cli_abort(...)
39. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
Expectedgg1d(...)to run without any errors.
i Actually got a <rlang_error> with text:
Problem while converting geom to grob.
i Error occurred in the 1st layer.
Caused by error indraw_panel()`:
! unused arguments (lineend = "butt", linejoin = "mitre")
[ FAIL 9 | WARN 1 | SKIP 2 | PASS 47 ]
Error: Test failures
Execution halted
```
ggalign
- Version: 1.0.2
- GitHub: https://github.com/Yunuuuu/ggalign
- Source code: https://github.com/cran/ggalign
- Date/Publication: 2025-05-14 14:00:08 UTC
- Number of recursive dependencies: 56
Run revdepcheck::cloud_details(, "ggalign") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggalign-Ex.R’ failed
The error most likely occurred in:
Name: align_dendro
Title: Plot dendrogram tree
Aliases: align_dendro
** Examples
align_dendro will always add a plot area
...
37. │ ├─S7::S7_dispatch()
38. │ └─ggplot2 (local) method(+, list(ggplot2::ggplot, class_any))(...)
39. │ └─ggplot2:::add_ggplot(e1, e2, e2name)
40. │ ├─ggplot2::ggplot_add(object, p, objectname)
41. │ └─ggalign:::ggplot_add.ggalign_design(object, p, objectname)
42. └─base::.handleSimpleError(...)
43. └─rlang (local) h(simpleError(msg, call))
44. └─handlers[1L]
45. └─rlang::cnd_signal(e)
Execution halted
```
-
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
• plot-align/reorder-left-reverse.svg
• plot-align/reorder-left.svg
• plot-align/reorder-right.svg
• plot-align/reorder-top-reverse.svg
• plot-align/reorder-top-within-group.svg
• plot-align/reorder-top.svg
• plot-align/stack-no-data-dendrogram-input.svg
• plot-align/stack-no-data-hclust-input.svg
Error: Test failures
Execution halted
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggalign_default_expansion:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.FacetSector:
function(object, plot, object_name)
...
function(plot, ...)
ggplot_build.ggalign_facet_sector_plot:
function(plot)
ggplot_build:
function(plot, ...)
ggplot_build.ggalign_heatmap:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
-
checking Rd cross-references ... WARNING
```
Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’
Missing link or links in Rd file 'scheme_theme.Rd':
‘[ggplot2:+.gg]{+.gg()}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
```
-
checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'scheme_theme.Rd':
scheme_theme
Code: function(..., line, rect, text, title, point, polygon, geom,
spacing, margins, aspect.ratio, axis.title,
axis.title.x, axis.title.x.top, axis.title.x.bottom,
axis.title.y, axis.title.y.left, axis.title.y.right,
axis.text, axis.text.x, axis.text.x.top,
axis.text.x.bottom, axis.text.y, axis.text.y.left,
axis.text.y.right, axis.text.theta, axis.text.r,
axis.ticks, axis.ticks.x, axis.ticks.x.top,
...
strip.text.y.right, strip.switch.pad.grid,
strip.switch.pad.wrap, complete = FALSE, validate =
TRUE)
Argument names in code not in docs:
point polygon geom spacing margins legend.key.justification
panel.widths panel.heights
Mismatches in argument names (first 3):
Position: 6 Code: point Docs: aspect.ratio
Position: 7 Code: polygon Docs: axis.title
Position: 8 Code: geom Docs: axis.title.x
Newly fixed
- checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’
In both
- checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'patchwork', 'ggrastr', 'maftools'
GGally
- Version: 2.2.1
- GitHub: https://github.com/ggobi/ggally
- Source code: https://github.com/cran/GGally
- Date/Publication: 2024-02-14 00:53:32 UTC
- Number of recursive dependencies: 143
Run revdepcheck::cloud_details(, "GGally") for more info
Newly broken
- checking whether package ‘GGally’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/GGally/new/GGally.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘GGally’ ...
** package ‘GGally’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in eval(exprs[i], envir) : object 'is.rel' not found
Error: unable to load R code in package ‘GGally’
Execution halted
ERROR: lazy loading failed for package ‘GGally’
* removing ‘/tmp/workdir/GGally/new/GGally.Rcheck/GGally’
CRAN
* installing *source* package ‘GGally’ ...
** package ‘GGally’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GGally)
gganimate
- Version: 1.0.9
- GitHub: https://github.com/thomasp85/gganimate
- Source code: https://github.com/cran/gganimate
- Date/Publication: 2024-02-27 14:00:03 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "gganimate") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gganimate)
Loading required package: ggplot2
>
> test_check("gganimate")
[ FAIL 2 | WARN 4 | SKIP 1 | PASS 4 ]
...
22. └─self$extract_key(...)
23. └─ggplot2 (local) extract_key(...)
24. └─Guide$extract_key(scale, aesthetic, ...)
25. └─ggplot2 (local) extract_key(...)
26. └─scale$map(breaks)
27. └─ggplot2 (local) map(..., self = self)
[ FAIL 2 | WARN 4 | SKIP 1 | PASS 4 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘gganimate.Rmd’ using rmarkdown
-
checking S3 generic/method consistency ... WARNING
```
ggplot_build:
function(plot, ...)
ggplot_build.gganim:
function(plot)
ggplot_add:
function(object, plot, ...)
ggplot_add.ExitFactory:
function(object, plot, object_name)
...
function(object, plot, ...)
ggplot_add.View:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.EaseAes:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
ggblend
- Version: 0.1.0
- GitHub: https://github.com/mjskay/ggblend
- Source code: https://github.com/cran/ggblend
- Date/Publication: 2023-05-22 08:30:05 UTC
- Number of recursive dependencies: 59
Run revdepcheck::cloud_details(, "ggblend") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggblend)
>
> test_check("ggblend")
[ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
...
actual$mapping is an S3 object of class , a list
expected$mapping is an S7 object of class
Backtrace:
▆
1. └─ggblend:::expect_equal_layer(...) at test-operation-adjust.R:19:3
2. └─testthat::expect_equal(...) at tests/testthat/helper-layer.R:26:3
[ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ]
Error: Test failures
Execution halted
```
ggborderline
- Version: 0.2.0
- GitHub: https://github.com/wurli/ggborderline
- Source code: https://github.com/cran/ggborderline
- Date/Publication: 2022-10-25 13:45:14 UTC
- Number of recursive dependencies: 42
Run revdepcheck::cloud_details(, "ggborderline") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggborderline-Ex.R’ failed
The error most likely occurred in:
Name: geom_borderpath
Title: Connect observations
Aliases: geom_borderpath geom_borderline geom_borderstep
** Examples
require(ggplot2)
...
5. └─ggplot2::build_ggplot(plot)
6. ├─S7::S7_dispatch()
7. └─ggplot2 (local) method(build_ggplot, ggplot2::ggplot)(...)
8. └─npscales$set_palettes(plot@theme)
9. └─ggplot2 (local) set_palettes(..., self = self)
10. ├─scales::as_discrete_pal(elem)
11. └─scales:::as_discrete_pal.default(elem)
12. └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.")
13. └─rlang::abort(...)
Execution halted
```
ggbrain
- Version: 0.9.0
- GitHub: https://github.com/michaelhallquist/ggbrain
- Source code: https://github.com/cran/ggbrain
- Date/Publication: 2025-03-20 01:30:02 UTC
- Number of recursive dependencies: 71
Run revdepcheck::cloud_details(, "ggbrain") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ggbrain_aesthetics.Rmd’ using rmarkdown
--- finished re-building ‘ggbrain_aesthetics.Rmd’
--- re-building ‘ggbrain_introduction.Rmd’ using rmarkdown
```
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggbrain_panel:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggbrain_label:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggbrain_layer:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
In both
- checking installed package size ... NOTE
installed size is 10.1Mb
sub-directories of 1Mb or more:
doc 1.6Mb
extdata 2.2Mb
libs 5.5Mb
ggbreak
- Version: 0.1.4
- GitHub: https://github.com/YuLab-SMU/ggbreak
- Source code: https://github.com/cran/ggbreak
- Date/Publication: 2025-02-04 17:50:10 UTC
- Number of recursive dependencies: 61
Run revdepcheck::cloud_details(, "ggbreak") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggbreak-Ex.R’ failed
The error most likely occurred in:
Name: scale_wrap
Title: scale-wrap
Aliases: scale_wrap
** Examples
library(ggplot2)
library(ggbreak)
p <- ggplot(economics, aes(x=date, y = unemploy, colour = uempmed)) +
+ geom_line()
p + scale_wrap(n=4)
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ggbreak.Rmd’ using rmarkdown
Quitting from ggbreak.Rmd:61-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in UseMethod():
! no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')"
Backtrace:
...
Error: processing vignette 'ggbreak.Rmd' failed with diagnostics:
no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')"
--- failed re-building ‘ggbreak.Rmd’
SUMMARY: processing the following file failed:
‘ggbreak.Rmd’
Error: Vignette re-building failed.
Execution halted
```
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.wrap_params:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggcut_params:
function(object, plot, object_name)
...
function(object, plot, ...)
ggplot_add.ggbreak:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.gg:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
ggbump
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggbump
- Date/Publication: 2020-04-24 16:00:02 UTC
- Number of recursive dependencies: 50
Run revdepcheck::cloud_details(, "ggbump") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggbump)
>
> test_check("ggbump")
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('test-numeric_inputs.R:21:3'): multiplication works ────────────────
... %>% class() not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-numeric_inputs.R:26:3'): multiplication works ────────────────
... %>% class() not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggdark
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/ggdark
- Date/Publication: 2019-01-11 17:30:06 UTC
- Number of recursive dependencies: 42
Run revdepcheck::cloud_details(, "ggdark") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggdark-Ex.R’ failed
The error most likely occurred in:
Name: dark_mode
Title: Activate dark mode on a 'ggplot2' theme
Aliases: dark_mode
** Examples
library(ggplot2)
...
p1 <- ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) +
+ geom_point()
p1 # theme returned by theme_get()
p1 + dark_mode() # activate dark mode on theme returned by theme_get()
Error in match(x, table, nomatch = 0L) :
'match' requires vector arguments
Calls: dark_mode -> %in%
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggdark)
>
> test_check("ggdark")
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Error ('test_dark_mode.R:10:1'): (code run outside of test_that()) ────────
Error in match(x, table, nomatch = 0L): 'match' requires vector arguments
Backtrace:
▆
1. └─ggdark::dark_mode(light_theme) at test_dark_mode.R:10:1
2. └─geoms[["GeomPoint"]]$default_aes$colour %in% ...
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggdemetra
- Version: 0.2.8
- GitHub: https://github.com/AQLT/ggdemetra
- Source code: https://github.com/cran/ggdemetra
- Date/Publication: 2024-02-04 14:50:02 UTC
- Number of recursive dependencies: 51
Run revdepcheck::cloud_details(, "ggdemetra") for more info
Newly broken
- checking whether package ‘ggdemetra’ can be installed ... WARNING
Found the following significant warnings:
Warning: `aes_()` was deprecated in ggplot2 3.0.0.
See ‘/tmp/workdir/ggdemetra/new/ggdemetra.Rcheck/00install.out’ for details.
ggDoE
- Version: 0.8
- GitHub: https://github.com/toledo60/ggDoE
- Source code: https://github.com/cran/ggDoE
- Date/Publication: 2024-02-10 04:50:02 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "ggDoE") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggDoE-Ex.R’ failed
The error most likely occurred in:
Name: gg_lm
Title: Regression Diagnostic Plots with ggplot2
Aliases: gg_lm
** Examples
model <- lm(mpg ~ wt + am + gear, data = mtcars)
gg_lm(model)
Warning: fortify(<lm>) was deprecated in ggplot2 3.6.0.
ℹ Please use broom::augment(<lm>) instead.
ℹ The deprecated feature was likely used in the ggplot2 package.
Please report the issue at https://github.com/tidyverse/ggplot2/issues.
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
ggDoubleHeat
- Version: 0.1.2
- GitHub: https://github.com/PursuitOfDataScience/ggDoubleHeat
- Source code: https://github.com/cran/ggDoubleHeat
- Date/Publication: 2023-08-24 21:00:04 UTC
- Number of recursive dependencies: 55
Run revdepcheck::cloud_details(, "ggDoubleHeat") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggDoubleHeat-Ex.R’ failed
The error most likely occurred in:
Name: geom_heat_circle
Title: Heatcircle
Aliases: geom_heat_circle
** Examples
...
+ y = rep(c("d", "e", "f"), 3),
+ outside_values = rep(c(1,5,7),3),
+ inside_values = rep(c(2,3,4),3))
ggplot(data, aes(x,y)) +
+ geom_heat_circle(outside = outside_values,
+ inside = inside_values)
Error in scale_title(title) : object 'outside_values' not found
Calls: ... extract_params -> -> make_title -> scale_title
Execution halted
```
ggeasy
- Version: 0.1.5
- GitHub: https://github.com/jonocarroll/ggeasy
- Source code: https://github.com/cran/ggeasy
- Date/Publication: 2024-11-03 05:50:02 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "ggeasy") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggeasy-Ex.R’ failed
The error most likely occurred in:
Name: easy_add_legend_title
Title: Easily add legend title(s)
Aliases: easy_add_legend_title
** Examples
...
Add legend title to a specific aesthetic
ggplot(mtcars, aes(wt, mpg, colour = cyl, size = hp)) +
+ geom_point() + easy_add_legend_title(col = "Number of Cylinders")
Add legend title to all aesthetics
ggplot(mtcars, aes(wt, mpg, colour = cyl)) +
+ geom_point() + easy_add_legend_title("Number of Cylinders")
Error: object is invalid:
- labels cannot contain duplicate names (colour, linetype, shape, and size).
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggeasy)
>
> test_check("ggeasy")
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 151 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
...
8. └─S7::validate(object, recursive = !parent_validated)
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 151 ]
Deleting unused snapshots:
• labs/labels-attrib.svg
• labs/labels-manual.svg
• labs/labels-mytitle.svg
• labs/labels-y-col.svg
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘shortcuts.Rmd’ using rmarkdown
-
checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.easy_labs:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
ggEDA
- Version: 0.1.0
- GitHub: https://github.com/CCICB/ggEDA
- Source code: https://github.com/cran/ggEDA
- Date/Publication: 2025-05-07 12:00:02 UTC
- Number of recursive dependencies: 92
Run revdepcheck::cloud_details(, "ggEDA") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggEDA-Ex.R’ failed
The error most likely occurred in:
Name: ggstack
Title: AutoPlot an entire data.frame
Aliases: ggstack
** Examples
...
31. │ └─base::lapply(...)
32. │ └─ggplot2 (local) FUN(X[[i]], ...)
33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
34. │ └─self$draw_panel(...)
35. └─base::.handleSimpleError(...)
36. └─rlang (local) h(simpleError(msg, call))
37. └─handlers[1L]
38. └─cli::cli_abort(...)
39. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
Expectedggstack(...)to run without any errors.
i Actually got a <rlang_error> with text:
Problem while converting geom to grob.
i Error occurred in the 1st layer.
Caused by error indraw_panel()`:
! unused arguments (lineend = "butt", linejoin = "mitre")
[ FAIL 11 | WARN 12 | SKIP 2 | PASS 114 ]
Error: Test failures
Execution halted
```
ggedit
- Version: 0.4.1
- GitHub: https://github.com/yonicd/ggedit
- Source code: https://github.com/cran/ggedit
- Date/Publication: 2024-03-04 14:40:02 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "ggedit") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggedit-Ex.R’ failed
The error most likely occurred in:
Name: compare
Title: compare
Aliases: compare
** Examples
compare(ggplot2::theme_bw(),ggplot2::theme_get())
Error in as.vector(x, "list") :
cannot coerce type 'object' to vector of type 'list'
Calls: compare ... themeFetchFull -> lapply -> as.list -> as.list.default
Execution halted
```
ggfields
- Version: 0.0.6
- GitHub: https://github.com/pepijn-devries/ggfields
- Source code: https://github.com/cran/ggfields
- Date/Publication: 2024-02-26 14:40:03 UTC
- Number of recursive dependencies: 100
Run revdepcheck::cloud_details(, "ggfields") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggfields-Ex.R’ failed
The error most likely occurred in:
Name: angle_correction
Title: Calculate correction for angle in the plot coordinate system
Aliases: angle_correction
** Examples
Create a data.frame with some xy-coordinates and all angles pointing North (0 degrees)
...
+ default_crs = 4326
+ )
+ )
When plotting as lon-lat, the angle correction will be zero
angle_correction(d, params_mockup, ggplot2::coord_sf(default_crs = 4326))
Error in panel_params$guides$get_guide(aesthetics) :
attempt to apply non-function
Calls: angle_correction ... train_panel_guides -> -> train_panel_guides
Execution halted
```
ggfixest
- Version: 0.3.0
- GitHub: https://github.com/grantmcdermott/ggfixest
- Source code: https://github.com/cran/ggfixest
- Date/Publication: 2025-05-14 02:20:02 UTC
- Number of recursive dependencies: 77
Run revdepcheck::cloud_details(, "ggfixest") for more info
Newly broken
- checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> ## Throttle CPU threads if R CMD check (for CRAN)
>
> if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) {
-
fixest
- if (requireNamespace("fixest", quietly = TRUE)) {
- library(fixest)
- setFixest_nthreads(1)
...
call| expect_snapshot_plot(p19a, label = "ggiplot_multi_complex_kitchen_iid")
diff| 1774
info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png
----- FAILED[]: test_ggiplot.R<193--193>
call| expect_snapshot_plot(p19b, label = "ggiplot_multi_complex_kitchen_iid")
diff| 1774
info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png
Error: 5 out of 111 tests failed
In addition: There were 11 warnings (use warnings() to see them)
Execution halted
```
ggfocus
- Version: 1.0.0
- GitHub: https://github.com/Freguglia/ggfocus
- Source code: https://github.com/cran/ggfocus
- Date/Publication: 2020-01-23 13:20:02 UTC
- Number of recursive dependencies: 52
Run revdepcheck::cloud_details(, "ggfocus") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggfocus-Ex.R’ failed
The error most likely occurred in:
Name: ggfocus
Title: (Deprecated) Sets focus scales to an existing 'ggplot' object
Aliases: ggfocus
** Examples
library(ggplot2)
...
p <- ggplot(iris,aes(x=Sepal.Length,y=Petal.Length)) + geom_point()
ggfocus(p, Species, "versicolor")
The function 'ggfocus()' is deprecated, consider using the family scale_*_focus() instead.
Warning: select_() was deprecated in dplyr 0.7.0.
ℹ Please use select() instead.
ℹ The deprecated feature was likely used in the ggfocus package.
Please report the issue at https://github.com/Freguglia/ggfocus/issues.
Error in scale_title(title) : object 'Species' not found
Calls: ... extract_params -> -> make_title -> scale_title
Execution halted
```
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggfocus_fill:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggfocus_shape:
function(object, plot, object_name)
...
function(object, plot, ...)
ggplot_add.ggfocus_size:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggfocus_linetype:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggforce
- Version: 0.4.2
- GitHub: https://github.com/thomasp85/ggforce
- Source code: https://github.com/cran/ggforce
- Date/Publication: 2024-02-19 11:00:02 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "ggforce") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggforce-Ex.R’ failed
The error most likely occurred in:
Name: facet_matrix
Title: Facet by different data columns
Aliases: facet_matrix
** Examples
Standard use:
ggplot(mpg) +
+ geom_point(aes(x = .panel_x, y = .panel_y)) +
+ facet_matrix(vars(displ, cty, hwy))
Error in get(x, envir = ns, inherits = FALSE) :
object 'check_labeller' not found
Calls: facet_matrix -> -> get
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 27.3Mb
sub-directories of 1Mb or more:
R 1.0Mb
help 1.2Mb
libs 25.0Mb
ggformula
- Version: 0.12.0
- GitHub: https://github.com/ProjectMOSAIC/ggformula
- Source code: https://github.com/cran/ggformula
- Date/Publication: 2023-11-09 12:30:07 UTC
- Number of recursive dependencies: 119
Run revdepcheck::cloud_details(, "ggformula") for more info
Newly broken
- checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'gf_lines.Rd':
gf_hline
Code: function(object = NULL, gformula = NULL, data = NULL, ...,
yintercept, color, linetype, linewidth, alpha, xlab,
ylab, title, subtitle, caption, position = "identity",
show.legend = NA, show.help = NULL, inherit = FALSE,
environment = parent.frame())
Docs: function(object = NULL, gformula = NULL, data = NULL, ...,
yintercept, color, linetype, linewidth, alpha, xlab,
ylab, title, subtitle, caption, show.legend = NA,
...
xintercept, color, linetype, linewidth, alpha, xlab,
ylab, title, subtitle, caption, show.legend = NA,
show.help = NULL, inherit = FALSE, environment =
parent.frame())
Argument names in code not in docs:
position
Mismatches in argument names (first 3):
Position: 15 Code: position Docs: show.legend
Position: 16 Code: show.legend Docs: show.help
Position: 17 Code: show.help Docs: inherit
In both
- checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘akima’, ‘ggforce’
ggfortify
- Version: 0.4.17
- GitHub: https://github.com/sinhrks/ggfortify
- Source code: https://github.com/cran/ggfortify
- Date/Publication: 2024-04-17 04:30:04 UTC
- Number of recursive dependencies: 121
Run revdepcheck::cloud_details(, "ggfortify") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
>
> suppressWarnings(RNGversion("3.5.0"))
> set.seed(1, sample.kind = "Rejection")
>
> test_check('ggfortify')
Loading required package: ggfortify
...
x[3]: "#595959FF"
y[3]: "grey35"
x[4]: "#595959FF"
y[4]: "grey35"
[ FAIL 5 | WARN 13 | SKIP 48 | PASS 734 ]
Error: Test failures
Execution halted
```
ggfun
- Version: 0.1.8
- GitHub: https://github.com/YuLab-SMU/ggfun
- Source code: https://github.com/cran/ggfun
- Date/Publication: 2024-12-03 10:20:02 UTC
- Number of recursive dependencies: 59
Run revdepcheck::cloud_details(, "ggfun") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.facet_set:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.scatter_rect:
function(object, plot, object_name)
...
function(object, plot, ...)
ggplot_add.segmentC:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.volpoint:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
ggfx
- Version: 1.0.1
- GitHub: https://github.com/thomasp85/ggfx
- Source code: https://github.com/cran/ggfx
- Date/Publication: 2022-08-22 08:00:06 UTC
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "ggfx") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING
```
ggplot_gtable:
function(plot)
ggplot_gtable.filtered_gtable:
function(data)
ggplot_build:
function(plot, ...)
ggplot_build.filtered_ggplot:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
In both
- checking Rd files ... NOTE
checkRd: (-1) render_context.Rd:42: Lost braces; missing escapes or markup?
42 | \item{xmin, ymin, xmax, ymax}{Boundaries of the area in pixels. {0,0} is the
| ^
gggenomes
- Version: 1.0.1
- GitHub: https://github.com/thackl/gggenomes
- Source code: https://github.com/cran/gggenomes
- Date/Publication: 2024-08-30 11:40:02 UTC
- Number of recursive dependencies: 109
Run revdepcheck::cloud_details(, "gggenomes") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘gggenomes-Ex.R’ failed
The error most likely occurred in:
Name: add_feats
Title: Add different types of tracks
Aliases: add_feats add_links add_subfeats add_sublinks add_clusters
add_tracks
** Examples
...
+ add_feats(repeats = emale_tirs) +
+ geom_seq() + geom_feat()
Warning: The size argument of element_line() is deprecated as of ggplot2 3.4.0.
ℹ Please use the linewidth argument instead.
ℹ The deprecated feature was likely used in the gggenomes package.
Please report the issue at https://github.com/thackl/gggenomes/issues.
Error in UseMethod("add_feats") :
no applicable method for 'add_feats' applied to an object of class "NULL"
Calls: %>% -> add_feats
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘emales.Rmd’ using rmarkdown
--- finished re-building ‘emales.Rmd’
--- re-building ‘flip.Rmd’ using rmarkdown
Quitting from flip.Rmd:16-44 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in UseMethod():
...
Error: processing vignette 'gggenomes.Rmd' failed with diagnostics:
no applicable method for 'track_info' applied to an object of class "NULL"
--- failed re-building ‘gggenomes.Rmd’
SUMMARY: processing the following files failed:
‘flip.Rmd’ ‘gggenomes.Rmd’
Error: Vignette re-building failed.
Execution halted
```
ggghost
- Version: 0.2.2
- GitHub: https://github.com/jonocarroll/ggghost
- Source code: https://github.com/cran/ggghost
- Date/Publication: 2025-04-15 05:50:07 UTC
- Number of recursive dependencies: 46
Run revdepcheck::cloud_details(, "ggghost") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggghost-Ex.R’ failed
The error most likely occurred in:
Name: -.gg
Title: Remove a call from a ggghost object
Aliases: -.gg
** Examples
create a ggghost object
...
remove the geom_smooth
z - geom_smooth()
remove the labels
NOTE: argument must be present and able to be
evaluated in scope
z - labs(TRUE) # works
Error: object is invalid:
- every label must be named.
Execution halted
```
gghalves
- Version: 0.1.4
- GitHub: https://github.com/erocoar/gghalves
- Source code: https://github.com/cran/gghalves
- Date/Publication: 2022-11-20 11:40:02 UTC
- Number of recursive dependencies: 49
Run revdepcheck::cloud_details(, "gghalves") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘gghalves-Ex.R’ failed
The error most likely occurred in:
Name: geom_half_point
Title: Points with jitter for half geoms.
Aliases: geom_half_point
** Examples
ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) +
...
32. │ └─base::lapply(...)
33. │ └─ggplot2 (local) FUN(X[[i]], ...)
34. │ └─ggplot2 (local) apply_fun(cur_data)
35. │ └─ggplot2 (local) fun(x, ...)
36. └─base::.handleSimpleError(...)
37. └─rlang (local) h(simpleError(msg, call))
38. └─handlers[1L]
39. └─cli::cli_abort(...)
40. └─rlang::abort(...)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘gghalves.Rmd’ using rmarkdown
Quitting from gghalves.Rmd:39-42 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gghalves.Rmd' failed with diagnostics:
...
ℹ Error occurred in the 1st layer.
Caused by error in fun():
! argument "layout" is missing, with no default
--- failed re-building ‘gghalves.Rmd’
SUMMARY: processing the following file failed:
‘gghalves.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘grDevices’ ‘gtable’
All declared Imports should be used.
gghighlight
- Version: 0.4.1
- GitHub: https://github.com/yutannihilation/gghighlight
- Source code: https://github.com/cran/gghighlight
- Date/Publication: 2023-12-16 01:00:02 UTC
- Number of recursive dependencies: 82
Run revdepcheck::cloud_details(, "gghighlight") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘gghighlight-Ex.R’ failed
The error most likely occurred in:
Name: gghighlight
Title: Highlight Data With Predicate
Aliases: gghighlight
** Examples
d <- data.frame(
...
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─gghighlight (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─gghighlight:::get_default_aes_param(nm, layer$geom, layer$mapping)
20. └─base::.handleSimpleError(...)
21. └─purrr (local) h(simpleError(msg, call))
22. └─cli::cli_abort(...)
23. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gghighlight)
Loading required package: ggplot2
>
> test_check("gghighlight")
label_key: type
label_key: type
...
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 7 | WARN 24 | SKIP 0 | PASS 159 ]
Deleting unused snapshots:
• vdiffr/simple-bar-chart-with-facet.svg
• vdiffr/simple-line-chart.svg
• vdiffr/simple-point-chart.svg
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘gghighlight.Rmd’ using rmarkdown
-
checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.gg_highlighter:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
gghourglass
- Version: 0.0.2
- GitHub: https://github.com/pepijn-devries/gghourglass
- Source code: https://github.com/cran/gghourglass
- Date/Publication: 2025-04-05 14:20:02 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "gghourglass") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘gghourglass-Ex.R’ failed
The error most likely occurred in:
Name: AnnotateLunarphase
Title: Annotate ggplot with lunar phases
Aliases: AnnotateLunarphase annotate_lunarphase
Keywords: datasets
** Examples
...
19. │ └─vctrs (local) <fn>()
20. │ ├─x[i = i]
21. │ └─grid:::[.unit(x = x, i = i)
22. │ └─base::stop(...)
23. └─base::.handleSimpleError(...)
24. └─rlang (local) h(simpleError(msg, call))
25. └─handlers[1L]
26. └─cli::cli_abort(...)
27. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gghourglass)
>
> test_check("gghourglass")
NULL
[ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ]
...
26. │ └─base::stop(...)
27. └─base::.handleSimpleError(...)
28. └─rlang (local) h(simpleError(msg, call))
29. └─handlers[1L]
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ]
Error: Test failures
Execution halted
```
ggimage
- Version: 0.3.3
- GitHub: https://github.com/GuangchuangYu/ggimage
- Source code: https://github.com/cran/ggimage
- Date/Publication: 2023-06-19 04:10:02 UTC
- Number of recursive dependencies: 56
Run revdepcheck::cloud_details(, "ggimage") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.bgimage:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
ggiraph
- Version: 0.8.13
- GitHub: https://github.com/davidgohel/ggiraph
- Source code: https://github.com/cran/ggiraph
- Date/Publication: 2025-03-28 10:20:02 UTC
- Number of recursive dependencies: 86
Run revdepcheck::cloud_details(, "ggiraph") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggiraph-Ex.R’ failed
The error most likely occurred in:
Name: geom_bar_interactive
Title: Create interactive bars
Aliases: geom_bar_interactive geom_col_interactive
** Examples
add interactive bar -------
...
23. │ └─base::lapply(...)
24. │ └─ggplot2 (local) FUN(X[[i]], ...)
25. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
26. │ └─self$draw_panel(...)
27. └─base::.handleSimpleError(...)
28. └─rlang (local) h(simpleError(msg, call))
29. └─handlers[1L]
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
- tinytest::test_package("ggiraph")
- }
test-annotate_interactive.R... 0 tests
test-annotate_interactive.R... 0 tests
test-annotate_interactive.R... 0 tests
...
33. │ └─base::lapply(...)
34. │ └─ggplot2 (local) FUN(X[[i]], ...)
35. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
36. │ └─self$draw_panel(...)
37. └─base::.handleSimpleError(...)
38. └─rlang (local) h(simpleError(msg, call))
39. └─handlers[1L]
40. └─cli::cli_abort(...)
41. └─rlang::abort(...)
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 8.1Mb
sub-directories of 1Mb or more:
R 1.5Mb
libs 5.2Mb
ggiraphExtra
- Version: 0.3.0
- GitHub: https://github.com/cardiomoon/ggiraphExtra
- Source code: https://github.com/cran/ggiraphExtra
- Date/Publication: 2020-10-06 07:00:02 UTC
- Number of recursive dependencies: 107
Run revdepcheck::cloud_details(, "ggiraphExtra") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggiraphExtra-Ex.R’ failed
The error most likely occurred in:
Name: ggBar
Title: Draw an interactive barplot
Aliases: ggBar
** Examples
require(moonBook)
...
24. │ └─base::lapply(...)
25. │ └─ggplot2 (local) FUN(X[[i]], ...)
26. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
27. │ └─self$draw_panel(...)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[1L]
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘ggPredict.Rmd’ using rmarkdown
gglogger
- Version: 0.1.5
- GitHub: https://github.com/pwwang/gglogger
- Source code: https://github.com/cran/gglogger
- Date/Publication: 2024-10-25 09:10:02 UTC
- Number of recursive dependencies: 42
Run revdepcheck::cloud_details(, "gglogger") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
y[1]: displ, y = hwy))\n"
── Failure ('test-gglogger.R:124:5'): gglogger stringify works ─────────────────code` not equal to "ggplot2::ggplot(ggplot2::mpg) +\n geom_point(aes(x = displ, y = hwy))".
1/1 mismatches
x[1]: "ggplot2::ggplot(ggplot2::mpg)"
y[1]: "ggplot2::ggplot(ggplot2::mpg) +\n geom_point(aes(x = displ, y = hwy))"
[ FAIL 16 | WARN 0 | SKIP 0 | PASS 38 ]
Error: Test failures
Execution halted
```
ggmap
- Version: 4.0.1
- GitHub: https://github.com/dkahle/ggmap
- Source code: https://github.com/cran/ggmap
- Date/Publication: 2025-04-07 19:40:02 UTC
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "ggmap") for more info
Newly broken
- checking whether package ‘ggmap’ can be installed ... WARNING
Found the following significant warnings:
Warning: `aes_()` was deprecated in ggplot2 3.0.0.
See ‘/tmp/workdir/ggmap/new/ggmap.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
data 7.0Mb
ggmice
- Version: 0.1.0
- GitHub: https://github.com/amices/ggmice
- Source code: https://github.com/cran/ggmice
- Date/Publication: 2023-08-07 14:20:02 UTC
- Number of recursive dependencies: 119
Run revdepcheck::cloud_details(, "ggmice") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘ggmice.Rmd’ using rmarkdown
ggmosaic
- Version: 0.3.3
- GitHub: https://github.com/haleyjeppson/ggmosaic
- Source code: https://github.com/cran/ggmosaic
- Date/Publication: 2021-02-23 19:50:02 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "ggmosaic") for more info
Newly broken
- checking whether package ‘ggmosaic’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details.
Newly fixed
- checking dependencies in R code ... NOTE
':::' call which should be '::': ‘scales:::censor’
See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘productplots:::bound’
See the note in ?`:::` about the use of this operator.
Installation
Devel
* installing *source* package ‘ggmosaic’ ...
** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'is.waive' not found
Error: unable to load R code in package ‘ggmosaic’
Execution halted
ERROR: lazy loading failed for package ‘ggmosaic’
* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’
CRAN
* installing *source* package ‘ggmosaic’ ...
** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggmosaic)
ggmulti
- Version: 1.0.7
- GitHub: NA
- Source code: https://github.com/cran/ggmulti
- Date/Publication: 2024-04-09 09:40:05 UTC
- Number of recursive dependencies: 123
Run revdepcheck::cloud_details(, "ggmulti") for more info
Newly broken
- checking whether package ‘ggmulti’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘ggmulti’ ...
** package ‘ggmulti’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'new_aes' not found
Error: unable to load R code in package ‘ggmulti’
Execution halted
ERROR: lazy loading failed for package ‘ggmulti’
* removing ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/ggmulti’
CRAN
* installing *source* package ‘ggmulti’ ...
** package ‘ggmulti’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggmulti)
ggnewscale
- Version: 0.5.1
- GitHub: https://github.com/eliocamp/ggnewscale
- Source code: https://github.com/cran/ggnewscale
- Date/Publication: 2025-02-24 09:00:02 UTC
- Number of recursive dependencies: 58
Run revdepcheck::cloud_details(, "ggnewscale") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggnewscale)
>
> test_check("ggnewscale")new_stat_bin2d()usingbins = 30. Pick better valuebinwidth.new_stat_bin2d()usingbins = 30. Pick better valuebinwidth.new_stat_bin2d()usingbins = 30. Pick better valuebinwidth`.
...
- └─scales:::as_discrete_pal.default(elem)
- └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.")
- └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 3 ]
Deleting unused snapshots:
• newscale/guides-outisde-of-scales.svg
• newscale/respects-override-aes-2.svg
Error: Test failures
Execution halted
```
-
checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.new_aes:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
ggpackets
- Version: 0.2.1
- GitHub: https://github.com/dgkf/ggpackets
- Source code: https://github.com/cran/ggpackets
- Date/Publication: 2022-10-10 23:30:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "ggpackets") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggpackets-Ex.R’ failed
The error most likely occurred in:
Name: ggpacket
Title: A container for lazy ggplot layers
Aliases: ggpacket
** Examples
library(ggplot2)
...
+ geom_line(...) %+%
+ geom_point(color = "red", ...)
+ }
ggplot(mtcars, aes(x = wt, y = mpg)) +
+ ggpk_func(color = "purple", size = 2, point.size = 4)
Error in if (grepl("^Ignoring unknown (parameters|aesthetics):", w$message)) invokeRestart("muffleWarning") :
the condition has length > 1
Calls: Ops.S7_object ... withOneRestart -> doWithOneRestart -> signalCondition ->
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘composing-functions.Rmd’ using rmarkdown
-
checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.ggpacket:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
ggparallel
- Version: 0.4.0
- GitHub: https://github.com/heike/ggparallel
- Source code: https://github.com/cran/ggparallel
- Date/Publication: 2024-03-09 22:00:02 UTC
- Number of recursive dependencies: 47
Run revdepcheck::cloud_details(, "ggparallel") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
▆
- ├─ggplot2::ggplot_build(test_mtcars_plot) at test-ggparallel.R:12:3
- ├─ggplot2:::ggplot_build.default(test_mtcars_plot)
- │ └─ggplot2::build_ggplot(plot)
- │ └─S7::S7_dispatch()
- └─S7:::method_lookup_error("build_ggplot",
<list>)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
```
ggpath
- Version: 1.0.2
- GitHub: https://github.com/mrcaseb/ggpath
- Source code: https://github.com/cran/ggpath
- Date/Publication: 2024-08-20 09:30:02 UTC
- Number of recursive dependencies: 64
Run revdepcheck::cloud_details(, "ggpath") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggpath-Ex.R’ failed
The error most likely occurred in:
Name: element_path
Title: Theme Elements for Image Grobs
Aliases: element_path element_raster
** Examples
library(ggplot2)
...
+ theme(
+ plot.caption = element_path(hjust = 1, size = 0.6),
+ axis.text.y = element_path(size = 1),
+ axis.title.x = element_path(),
+ axis.title.y = element_path(vjust = 0.9),
+ plot.title = element_path(hjust = 0, size = 2, alpha = 0.5),
+ plot.subtitle = element_path(hjust = 0.9, angle = 45),
+ )
Error: object must be an , not a S3
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpath)
>
> test_check("ggpath")
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 3 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
...
• geom_lines/p1.svg
• geom_lines/p2.svg
• geom_lines/p3.svg
• geom_lines/p4.svg
• geom_lines/p5.svg
• theme-elements/p1.svg
• theme-elements/p2.svg
• theme-elements/p3.svg
Error: Test failures
Execution halted
```
ggpedigree
- Version: 0.7.0
- GitHub: https://github.com/R-Computing-Lab/ggpedigree
- Source code: https://github.com/cran/ggpedigree
- Date/Publication: 2025-06-10 00:10:02 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "ggpedigree") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
── Failure ('test-ggPedigreeInteractive.R:279:3'): ggPedigreeInteractive handles inbreeding ──p_widget_nozyginherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'htmlwidget'.
── Failure ('test-ggPedigreeInteractive.R:294:3'): ggPedigreeInteractive handles inbreeding ──p_nozyginherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'plotly'.
── Failure ('test-ggPedigreeInteractive.R:295:3'): ggPedigreeInteractive handles inbreeding ──p_nozyg` inherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'htmlwidget'.
[ FAIL 16 | WARN 14 | SKIP 0 | PASS 281 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘v00_plots.Rmd’ using rmarkdown
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘OpenMx’
ggplot2.utils
- Version: 0.3.2
- GitHub: https://github.com/insightsengineering/ggplot2.utils
- Source code: https://github.com/cran/ggplot2.utils
- Date/Publication: 2024-06-25 21:10:02 UTC
- Number of recursive dependencies: 70
Run revdepcheck::cloud_details(, "ggplot2.utils") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggplot2.utils)
Loading required package: ggplot2
>
> test_check("ggplot2.utils")
Attaching package: 'dplyr'
...
── Failure ('test-geom_km_ticks.R:10:3'): geom_km_ticks works as expected ──────
Names of first_layer ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill'
── Failure ('test-stat_km.R:10:3'): stat_km works as expected ──────────────────
Names of first_layer ('time', 'survival', 'PANEL', 'group', 'x', 'y', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha') don't match 'x', 'y', 'time', 'survival', 'PANEL', 'group', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha'
── Failure ('test-stat_km_ticks.R:10:3'): stat_km_ticks works as expected ──────
Names of first_layer ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill'
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 44 ]
Error: Test failures
Execution halted
```
ggPMX
- Version: 1.2.11
- GitHub: https://github.com/ggPMXdevelopment/ggPMX
- Source code: https://github.com/cran/ggPMX
- Date/Publication: 2023-11-30 16:10:06 UTC
- Number of recursive dependencies: 173
Run revdepcheck::cloud_details(, "ggPMX") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ggPMX-guide.Rmd’ using rmarkdown
Quitting from ggPMX-guide.Rmd:24-37 [load_package]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in +.gg:
! 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
Backtrace:
...
Error: processing vignette 'ggPMX-guide.Rmd' failed with diagnostics:
'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
--- failed re-building ‘ggPMX-guide.Rmd’
SUMMARY: processing the following file failed:
‘ggPMX-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
-
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘lixoftConnectors’
-
checking installed package size ... NOTE
installed size is 9.0Mb
sub-directories of 1Mb or more:
doc 1.1Mb
help 2.4Mb
testdata 4.8Mb
ggpol
- Version: 0.0.7
- GitHub: https://github.com/erocoar/ggpol
- Source code: https://github.com/cran/ggpol
- Date/Publication: 2020-11-08 13:40:02 UTC
- Number of recursive dependencies: 51
Run revdepcheck::cloud_details(, "ggpol") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggpol-Ex.R’ failed
The error most likely occurred in:
Name: GeomConfmat
Title: Confusion Matrix
Aliases: GeomConfmat geom_confmat stat_confmat
** Examples
x <- sample(LETTERS[seq(4)], 50, replace = TRUE)
...
24. │ └─ggpol (local) draw_panel(...)
25. │ └─base::lapply(GeomText$default_aes[missing_aes], rlang::eval_tidy)
26. │ └─rlang (local) FUN(X[[i]], ...)
27. ├─ggplot2::from_theme(fontsize)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[1L]
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
```
In both
-
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘dplyr’ ‘grDevices’
All declared Imports should be used.
-
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggprism
- Version: 1.0.6
- GitHub: https://github.com/csdaw/ggprism
- Source code: https://github.com/cran/ggprism
- Date/Publication: 2025-05-17 10:50:02 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "ggprism") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggprism-Ex.R’ failed
The error most likely occurred in:
Name: annotation_ticks
Title: Add ticks as ggplot annotation
Aliases: annotation_ticks
** Examples
Generally it is better to use the guide_prism_minor function.
...
Please report the issue at https://github.com/csdaw/ggprism/issues.
Error in parent %+replace% t:
! %+replace% requires two theme objects
Backtrace:
▆
1. └─ggprism::theme_prism(border = TRUE)
2. └─parent %+replace% t
3. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
4. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("ggprism")
- }
test-add_pvalue.R............. 0 tests
test-add_pvalue.R............. 0 tests
...
ℹ It has been replaced by a ggproto system that can be extended.
3: The size argument of element_line() is deprecated as of ggplot2 3.4.0.
ℹ Please use the linewidth argument instead.
ℹ The deprecated feature was likely used in the ggprism package.
Please report the issue at https://github.com/csdaw/ggprism/issues.
4: The size argument of element_rect() is deprecated as of ggplot2 3.4.0.
ℹ Please use the linewidth argument instead.
ℹ The deprecated feature was likely used in the ggprism package.
Please report the issue at https://github.com/csdaw/ggprism/issues.
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘axes.Rmd’ using rmarkdown
Quitting from axes.Rmd:37-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'axes.Rmd' failed with diagnostics:
%+replace% requires two theme objects
...
Error: processing vignette 'themes.Rmd' failed with diagnostics:
%+replace% requires two theme objects
--- failed re-building ‘themes.Rmd’
SUMMARY: processing the following files failed:
‘axes.Rmd’ ‘colours.Rmd’ ‘ggprism.Rmd’ ‘pvalues.Rmd’ ‘themes.Rmd’
Error: Vignette re-building failed.
Execution halted
```
ggpubr
- Version: 0.6.0
- GitHub: https://github.com/kassambara/ggpubr
- Source code: https://github.com/cran/ggpubr
- Date/Publication: 2023-02-10 16:20:02 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "ggpubr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ]
...
[6] 6 - 10 == -4
[7] 19 - 9 == 10
[9] 1 - 7 == -6
[10] 6 - 7 == -1
[11] 13 - 6 == 7
...
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ]
Error: Test failures
Execution halted
```
ggquickeda
- Version: 0.3.1
- GitHub: https://github.com/smouksassi/ggquickeda
- Source code: https://github.com/cran/ggquickeda
- Date/Publication: 2024-01-15 10:20:02 UTC
- Number of recursive dependencies: 174
Run revdepcheck::cloud_details(, "ggquickeda") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggquickeda-Ex.R’ failed
The error most likely occurred in:
Name: ggcontinuousexpdist
Title: Create a continuous exposure fit plot
Aliases: ggcontinuousexpdist
** Examples
Example 1
...
Joining with by = join_by(loopvariable, DOSE, quant_25)
Joining with by = join_by(loopvariable, DOSE, quant_75)
Joining with by = join_by(loopvariable, DOSE, medexp)
a / b +
+ plot_layout(guides = "collect") &
+ theme(legend.position = "top")
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘DT’ ‘Formula’ ‘GGally’ ‘Hmisc’ ‘RPostgres’ ‘colourpicker’ ‘ggpmisc’
‘ggpubr’ ‘glue’ ‘gridExtra’ ‘markdown’ ‘patchwork’ ‘plotly’
‘quantreg’ ‘shinyFiles’ ‘shinyjqui’ ‘shinyjs’ ‘table1’ ‘zoo’
All declared Imports should be used.
ggraph
- Version: 2.2.1
- GitHub: https://github.com/thomasp85/ggraph
- Source code: https://github.com/cran/ggraph
- Date/Publication: 2024-03-07 12:40:02 UTC
- Number of recursive dependencies: 113
Run revdepcheck::cloud_details(, "ggraph") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggraph-Ex.R’ failed
The error most likely occurred in:
Name: geom_conn_bundle
Title: Create hierarchical edge bundles between node connections
Aliases: geom_conn_bundle geom_conn_bundle2 geom_conn_bundle0
** Examples
Create a graph of the flare class system
...
+ ) +
+ geom_node_point(aes(filter = leaf, colour = class)) +
+ scale_edge_colour_distiller('', direction = 1, guide = 'edge_direction') +
+ coord_fixed() +
+ ggforce::theme_no_axes()
Error in get_layer_key(...) :
unused argument (list(, , , , , , , 5.5, c(5.5, 5.5, 5.5, 5.5), NULL, , , , NULL, , NULL, , , , , NULL, , NULL, , NULL, , , NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0.5, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0.75, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, , NULL, NULL, NULL, NULL, NULL, NULL,
NULL, NULL, , NULL, 2, NULL, NULL, NULL, 1.2, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0.2, NULL, , NULL, , NULL, "right", NULL, NULL, NULL, "center", NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0, , 2, , , NULL, NULL, NULL, , NULL, , NULL, NULL, NULL, NULL, FALSE, NULL, NULL, , , "panel", , , "panel", , "topleft", NULL, NULL, , NULL, NULL, "on", "
Calls: ... -> -> process_layers ->
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘Edges.Rmd’ using rmarkdown
-
checking S3 generic/method consistency ... WARNING
ggplot_build:
function(plot, ...)
ggplot_build.ggraph:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
In both
- checking installed package size ... NOTE
installed size is 9.0Mb
sub-directories of 1Mb or more:
R 1.5Mb
doc 3.9Mb
libs 2.8Mb
ggredist
- Version: 0.0.2
- GitHub: https://github.com/alarm-redist/ggredist
- Source code: https://github.com/cran/ggredist
- Date/Publication: 2022-11-23 11:20:02 UTC
- Number of recursive dependencies: 64
Run revdepcheck::cloud_details(, "ggredist") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggredist-Ex.R’ failed
The error most likely occurred in:
Name: geom_district_text
Title: Label Map Regions
Aliases: geom_district_text geom_district_label
stat_district_coordinates StatDistrictCoordinates GeomDistrictText
Keywords: datasets
** Examples
...
25. │ └─coord$transform(data, panel_params)
26. │ └─ggplot2 (local) transform(..., self = self)
27. │ └─ggplot2:::sf_rescale01(data[[geom_column(data)]], x_range, y_range)
28. │ └─sf::st_normalize(x, c(x_range[1], y_range[1], x_range[2], y_range[2]))
29. └─base::.handleSimpleError(...)
30. └─rlang (local) h(simpleError(msg, call))
31. └─handlers[1L]
32. └─cli::cli_abort(...)
33. └─rlang::abort(...)
Execution halted
```
ggResidpanel
- Version: 0.3.0
- GitHub: NA
- Source code: https://github.com/cran/ggResidpanel
- Date/Publication: 2019-05-31 23:20:04 UTC
- Number of recursive dependencies: 111
Run revdepcheck::cloud_details(, "ggResidpanel") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggResidpanel-Ex.R’ failed
The error most likely occurred in:
Name: resid_interact
Title: Panel of Interactive Versions of Diagnostic Residual Plots.
Aliases: resid_interact
** Examples
Fit a model to the penguin data
penguin_model <- lme4::lmer(heartrate ~ depth + duration + (1|bird), data = penguins)
Create the default interactive panel
resid_interact(penguin_model)
Error in pm[[2]] : subscript out of bounds
Calls: resid_interact ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggResidpanel)
>
> test_check("ggResidpanel")
[ FAIL 1 | WARN 4 | SKIP 9 | PASS 18 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
...
42. │ └─ggplot2 (local) draw_group(..., self = self)
43. └─base::.handleSimpleError(...)
44. └─rlang (local) h(simpleError(msg, call))
45. └─handlers[1L]
46. └─cli::cli_abort(...)
47. └─rlang::abort(...)
[ FAIL 1 | WARN 4 | SKIP 9 | PASS 18 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
ggRtsy
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggRtsy
- Date/Publication: 2023-09-15 19:12:05 UTC
- Number of recursive dependencies: 65
Run revdepcheck::cloud_details(, "ggRtsy") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggplot2)
> library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
...
13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. │ └─vctrs::vec_as_location(i, n, names = names, arg = arg, call = call)
15. └─vctrs (local) <fn>()
16. └─vctrs:::stop_subscript_oob(...)
17. └─vctrs:::stop_subscript(...)
18. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘Vignette.Rmd’ using rmarkdown
Quitting from Vignette.Rmd:47-49 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Vignette.Rmd' failed with diagnostics:
...
Can't extract rows past the end.
ℹ Location 1 doesn't exist.
ℹ There are only 0 rows.
--- failed re-building ‘Vignette.Rmd’
SUMMARY: processing the following file failed:
‘Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 19 marked UTF-8 strings
ggseas
- Version: 0.5.4
- GitHub: https://github.com/ellisp/ggseas
- Source code: https://github.com/cran/ggseas
- Date/Publication: 2018-06-12 13:33:33 UTC
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "ggseas") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggseas)
Loading required package: ggplot2
>
> test_check("ggseas")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 9 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tsdf.R:22:4'): ggplot can draw graphic with tsdf output ──────
class(tmp2) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 9 ]
Error: Test failures
Execution halted
```
ggseqplot
- Version: 0.8.6
- GitHub: https://github.com/maraab23/ggseqplot
- Source code: https://github.com/cran/ggseqplot
- Date/Publication: 2025-05-06 22:10:02 UTC
- Number of recursive dependencies: 127
Run revdepcheck::cloud_details(, "ggseqplot") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggseqplot-Ex.R’ failed
The error most likely occurred in:
Name: ggseqrfplot
Title: Relative Frequency Sequence Plot
Aliases: ggseqrfplot
** Examples
Load additional library for fine-tuning the plots
...
... with ggseqrfplot
ggseqrfplot(biofam.seq, weighted = FALSE, diss = diss, k = 12, grp.meth="first")
[>] Using k=12 frequency groups with grp.meth='first'
[>] Pseudo/medoid-based-R2: 0.4620155
[>] Pseudo/medoid-based-F statistic: 6.870317, p-value: 3.09994e-08
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggseqplot)
Loading required package: TraMineR
TraMineR stable version 2.2-11 (Built: 2024-12-09)
Website: http://traminer.unige.ch
Please type 'citation("TraMineR")' for citation information.
...
Backtrace:
▆
1. ├─testthat::expect_s3_class(ggseqtrplot(biofam.seq), "ggplot") at test-ggseqtrplot.R:35:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ggseqplot::ggseqtrplot(biofam.seq)
[ FAIL 3 | WARN 16 | SKIP 0 | PASS 117 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘ggseqplot.Rmd’ using rmarkdown
ggside
- Version: 0.3.1
- GitHub: https://github.com/jtlandis/ggside
- Source code: https://github.com/cran/ggside
- Date/Publication: 2024-03-01 09:12:37 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "ggside") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ggside-Ex.R’ failed
The error most likely occurred in:
Name: geom_xsidebar
Title: Side bar Charts
Aliases: geom_xsidebar geom_*sidebar geom_ysidebar geom_xsidecol
geom_ysidecol
** Examples
...
14. │ └─base::withCallingHandlers(...)
15. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
16. └─l$compute_statistic(d, layout)
17. └─ggside (local) compute_statistic(..., self = self)
18. └─ggplot2 (local) ggproto_parent_method(self = self, data = data, layout = layout)
19. └─self$stat$setup_params(data, self$stat_params)
20. └─ggplot2 (local) setup_params(..., self = self)
21. └─cli::cli_abort("{.fn {snake_class(self)}} must only have an {.field x} {.emph or} {.field y} aesthetic.")
22. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggplot2)
> library(ggside)
Registered S3 method overwritten by 'ggside':
method from
+.gg ggplot2
>
...
• side_layers/label.svg
• side_layers/violin.svg
• vdiff_irisScatter/collapsed-histo.svg
• vdiff_irisScatter/facetgrid-collapsed-density.svg
• vdiff_irisScatter/facetgrid-histo.svg
• vdiff_irisScatter/facetgrid-side-density.svg
• vdiff_irisScatter/stacked-side-density.svg
• vdiff_irisScatter/yside-histo.svg
Error: Test failures
Execution halted
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ggside_aes_mapping.Rmd’ using rmarkdown
Quitting from ggside_aes_mapping.Rmd:42-46 [ggside_updated_aes_usage]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ggside_aes_mapping.Rmd' failed with diagnostics:
Problem while setting up geom.
ℹ Error occurred in the 2nd layer.
Caused by error in ggproto_parent_method():
! geom_xsidedensity() requires the following missing aesthetics: y.
--- failed re-building ‘ggside_aes_mapping.Rmd’
--- re-building ‘ggside_basic_usage.Rmd’ using rmarkdown
```
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggside_scale:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggside_layer:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggside_options:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
-
checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'geom_xsideabline.Rd':
geom_xsidehline
Code: function(mapping = NULL, data = NULL, position = "identity",
..., yintercept, na.rm = FALSE, show.legend = NA)
Docs: function(mapping = NULL, data = NULL, ..., yintercept, na.rm =
FALSE, show.legend = NA)
Argument names in code not in docs:
position
Mismatches in argument names (first 3):
Position: 3 Code: position Docs: ...
...
FALSE, show.legend = NA, inherit.aes = TRUE,
orientation = "y")
Argument names in code not in docs:
quantile.colour quantile.color quantile.linetype quantile.linewidth
Mismatches in argument names (first 3):
Position: 6 Code: trim Docs: draw_quantiles
Position: 7 Code: bounds Docs: trim
Position: 8 Code: quantile.colour Docs: bounds
Mismatches in argument default values:
Name: 'draw_quantiles' Code: deprecated() Docs: NULL
-
checking R code for possible problems ... NOTE
geom_xsidelabel: no visible global function definition for ‘deprecated’
geom_xsideviolin: no visible global function definition for
‘deprecated’
geom_ysidelabel: no visible global function definition for ‘deprecated’
geom_ysideviolin: no visible global function definition for
‘deprecated’
Undefined global functions or variables:
deprecated
ggspatial
- Version: 1.1.9
- GitHub: https://github.com/paleolimbot/ggspatial
- Source code: https://github.com/cran/ggspatial
- Date/Publication: 2023-08-17 15:32:38 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "ggspatial") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.fixed_plot_aspect:
function(object, plot, object_name)
ggplot_build:
function(plot, ...)
ggplot_build.gg_fixed_plot_aspect:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
ggstatsplot
- Version: 0.13.1
- GitHub: https://github.com/IndrajeetPatil/ggstatsplot
- Source code: https://github.com/cran/ggstatsplot
- Date/Publication: 2025-05-09 23:40:02 UTC
- Number of recursive dependencies: 172
Run revdepcheck::cloud_details(, "ggstatsplot") for more info
Newly broken
- checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # graphics engine changed in this version, and so snapshots generated on
> # previous R version won't work
> if (getRversion() >= "4.4.0") {
- library(testthat)
- suppressPackageStartupMessages(library(ggstatsplot))
- test_check("ggstatsplot")
- }
...
• pairwise-ggsignif/within-non-parametric-all.svg
• pairwise-ggsignif/within-non-parametric-only-non-significant.svg
• pairwise-ggsignif/within-non-parametric-only-significant.svg
• pairwise-ggsignif/within-parametric-all.svg
• pairwise-ggsignif/within-parametric-only-significant.svg
• pairwise-ggsignif/within-robust-all.svg
• pairwise-ggsignif/within-robust-only-non-significant.svg
• pairwise-ggsignif/within-robust-only-significant.svg
Error: Test failures
Execution halted
```
ggstream
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggstream
- Date/Publication: 2021-05-06 07:50:03 UTC
- Number of recursive dependencies: 51
Run revdepcheck::cloud_details(, "ggstream") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggstream)
>
> test_check("ggstream")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-geom_stream.R:4:3'): geom_stream ─────────────────────────────
class(...) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘tidyr’
All declared Imports should be used.
ggswissmaps
- Version: 0.1.1
- GitHub: https://github.com/gibonet/ggswissmaps
- Source code: https://github.com/cran/ggswissmaps
- Date/Publication: 2016-10-29 10:48:24
- Number of recursive dependencies: 68
Run revdepcheck::cloud_details(, "ggswissmaps") for more info
Newly broken
-
checking whether package ‘ggswissmaps’ can be installed ... WARNING
Found the following significant warnings:
Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
See ‘/tmp/workdir/ggswissmaps/new/ggswissmaps.Rcheck/00install.out’ for details.
-
checking whether the namespace can be loaded with stated dependencies ... NOTE
``
Warning:aes_string()was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms withaes().
ℹ See alsovignette("ggplot2-in-packages")` for more information.
ℹ The deprecated feature was likely used in the ggswissmaps package.
Please report the issue to the authors.
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
```
ggtangle
- Version: 0.0.6
- GitHub: NA
- Source code: https://github.com/cran/ggtangle
- Date/Publication: 2024-12-18 14:30:06 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "ggtangle") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘ggtangle.Rmd’ using rmarkdown
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.cnet_label:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.layer_edge:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
ggtern
- Version: 3.5.0
- GitHub: NA
- Source code: https://github.com/cran/ggtern
- Date/Publication: 2024-03-24 21:50:02 UTC
- Number of recursive dependencies: 39
Run revdepcheck::cloud_details(, "ggtern") for more info
Newly broken
- checking whether package ‘ggtern’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details.
Newly fixed
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘chemometrics’
In both
- checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘sp’
Installation
Devel
* installing *source* package ‘ggtern’ ...
** package ‘ggtern’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'is.zero' not found
Error: unable to load R code in package ‘ggtern’
Execution halted
ERROR: lazy loading failed for package ‘ggtern’
* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’
CRAN
* installing *source* package ‘ggtern’ ...
** package ‘ggtern’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggtern)
ggtext
- Version: 0.1.2
- GitHub: https://github.com/wilkelab/ggtext
- Source code: https://github.com/cran/ggtext
- Date/Publication: 2022-09-16 11:36:07 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "ggtext") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘plotting_text.Rmd’ using rmarkdown
ggtibble
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/ggtibble
- Date/Publication: 2024-06-19 12:50:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "ggtibble") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
- │ └─rlang::eval_bare(expr, quo_get_env(quo))
- ├─ggtibble::new_gglist(list(ggplot2::labs("foo")))
- └─ggplot2::labs("foo")
- └─ggplot2::class_labels(args)
- └─S7::new_object(labels)
- └─S7::validate(object, recursive = !parent_validated)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 59 ]
Error: Test failures
Execution halted
```
ggtime
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggtime
- Date/Publication: 2025-06-10 09:10:02 UTC
- Number of recursive dependencies: 70
Run revdepcheck::cloud_details(, "ggtime") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
▆
- ├─ggplot2::ggplot_build(p[[1]]) at test-plot-helpers.R:192:3
- ├─ggplot2:::ggplot_build.default(p[[1]])
- │ └─ggplot2::build_ggplot(plot)
- │ └─S7::S7_dispatch()
- └─S7:::method_lookup_error("build_ggplot",
<named list>)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
```
ggVennDiagram
- Version: 1.5.2
- GitHub: https://github.com/gaospecial/ggVennDiagram
- Source code: https://github.com/cran/ggVennDiagram
- Date/Publication: 2024-02-20 08:10:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "ggVennDiagram") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘VennCalculator.Rmd’ using rmarkdown
--- finished re-building ‘VennCalculator.Rmd’
--- re-building ‘fully-customed.Rmd’ using rmarkdown
```
In both
- checking installed package size ... NOTE
installed size is 11.1Mb
sub-directories of 1Mb or more:
doc 9.5Mb
help 1.1Mb
ggview
- Version: 0.2.1
- GitHub: https://github.com/idmn/ggview
- Source code: https://github.com/cran/ggview
- Date/Publication: 2024-10-02 17:00:10 UTC
- Number of recursive dependencies: 44
Run revdepcheck::cloud_details(, "ggview") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.canvas:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
grafify
- Version: 5.0.0.1
- GitHub: https://github.com/ashenoy-cmbi/grafify
- Source code: https://github.com/cran/grafify
- Date/Publication: 2025-03-10 22:50:02 UTC
- Number of recursive dependencies: 111
Run revdepcheck::cloud_details(, "grafify") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(grafify)
Loading required package: ggplot2
> library(rlang)
Attaching package: 'rlang'
...
Backtrace:
▆
1. └─testthat::expect_match(db2$labels$y, "PI") at test-plot_befafter_colors.R:37:3
2. └─base::stopifnot(is.character(act$val))
── Failure ('test-plot_qqline.R:14:3'): Check QQ plots ─────────────────────────
as.character(db1$labels$y) is empty.
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 180 ]
Error: Test failures
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
help 5.3Mb
-
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘gratia’
graphPAF
- Version: 2.0.0
- GitHub: https://github.com/johnfergusonNUIG/graphPAF
- Source code: https://github.com/cran/graphPAF
- Date/Publication: 2023-12-21 00:50:06 UTC
- Number of recursive dependencies: 47
Run revdepcheck::cloud_details(, "graphPAF") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘graphPAF-Ex.R’ failed
The error most likely occurred in:
Name: plot.SAF_summary
Title: Produce plots of sequential and average PAF
Aliases: plot.SAF_summary
** Examples
library(splines)
...
+ riskfactor_vec = c("urban.rural","occupational.exposure"),ci=FALSE)
plot(out)
Warning in fortify(data, ...) : Arguments in ... must be used.
✖ Problematic argument:
• size = point.size
ℹ Did you misspell an argument name?
Error: Can't find method for generic +(e1, e2):
- e1:
- e2:
Execution halted
```
gratia
- Version: 0.10.0
- GitHub: https://github.com/gavinsimpson/gratia
- Source code: https://github.com/cran/gratia
- Date/Publication: 2024-12-19 19:10:02 UTC
- Number of recursive dependencies: 153
Run revdepcheck::cloud_details(, "gratia") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘gratia-Ex.R’ failed
The error most likely occurred in:
Name: appraise
Title: Model diagnostic plots
Aliases: appraise appraise.gam appraise.lm
** Examples
load_mgcv()
...
change the ggplot theme for all panels
library("ggplot2")
appraise(mod, seed = 42,
+ point_col = "steelblue", point_alpha = 0.4,
+ line_col = "black"
+ ) & theme_minimal()
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> ## Test `gratia` using the `testthat` package
>
> ## Setup
> library("testthat")
> library("gratia")
>
> ## Runs the tests in tests/testthat
...
• penalty/draw-penalty-single-smooths-user-continuous-fill.svg
• rootograms/draw-gaussian-rootogram.svg
• rootograms/draw-neg-bin-rootogram.svg
• rootograms/draw-neg-bin-sqrt-rootogram.svg
• rootograms/draw-neg-bin-standing-rootogram.svg
• rootograms/draw-neg-bin-suspended-rootogram.svg
• soap-films/draw-gam-so-soap-film.svg
• soap-films/draw-smooth-estimates-so-soap-film.svg
Error: Test failures
Execution halted
Greymodels
- Version: 2.0.1
- GitHub: https://github.com/havishaJ/Greymodels
- Source code: https://github.com/cran/Greymodels
- Date/Publication: 2022-12-05 12:42:35 UTC
- Number of recursive dependencies: 86
Run revdepcheck::cloud_details(, "Greymodels") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘Greymodels-Ex.R’ failed
The error most likely occurred in:
Name: Plots
Title: plots
Aliases: plots plotrm plotsmv1 plotsmv2 plotsigndgm plots_mdbgm12
** Examples
# Plots - EPGM (1, 1) model
...
+ geom_point(data = set4, aes(x = CI, y = y), shape = 23, color = "black") +
+ geom_line(data = xy1, aes(x = x, y = y,color = "Raw Data")) +
+ geom_line(data = xy2, aes(x = x, y = y,color = "Fitted&Forecasts")) +
+ geom_line(data = set3, aes(x = CI, y = y,color = "LowerBound"), linetype=2) +
+ geom_line(data = set4, aes(x = CI, y = y,color = "UpperBound"), linetype=2) +
+ scale_color_manual(name = "Label",values = colors)
r <- ggplotly(p)
Error in pm[[2]] : subscript out of bounds
Calls: ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
GRShiny
- Version: 1.0.0
- GitHub: https://github.com/sooyongl/GRShiny
- Source code: https://github.com/cran/GRShiny
- Date/Publication: 2023-05-03 18:40:06 UTC
- Number of recursive dependencies: 152
Run revdepcheck::cloud_details(, "GRShiny") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GRShiny)
>
> test_check("GRShiny")
F1 =~ NAy1+l1y1+l2*y2
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-gendata.r:73:3'): Plotting functions work ────────────────────
res is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) runGRM.Rd:24: Lost braces
24 | from \code{\link{mirt}} or code{\linkS4class{lavaan}} from from
| ^
grwat
- Version: 0.0.4
- GitHub: https://github.com/tsamsonov/grwat
- Source code: https://github.com/cran/grwat
- Date/Publication: 2023-10-27 11:40:12 UTC
- Number of recursive dependencies: 97
Run revdepcheck::cloud_details(, "grwat") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> suppressPackageStartupMessages(library(grwat))
>
> test_check("grwat")
[ FAIL 7 | WARN 4 | SKIP 1 | PASS 165 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
...
── Failure ('test-gr_plot_matrix.R:17:3'): Matrix ggplot has the correct content ──
plt has type 'object', not 'list'.
── Failure ('test-gr_plot_ridge.R:9:3'): Ridgeline plot has the correct content ──
plt has type 'object', not 'list'.
── Failure ('test-gr_plot_tests.R:10:3'): Tests plot has the correct content ───
plt has type 'object', not 'list'.
[ FAIL 7 | WARN 4 | SKIP 1 | PASS 165 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.6Mb
libs 2.6Mb
gtExtras
- Version: 0.6.0
- GitHub: https://github.com/jthomasmock/gtExtras
- Source code: https://github.com/cran/gtExtras
- Date/Publication: 2025-05-29 04:50:02 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "gtExtras") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gtExtras)
Loading required package: gt
Attaching package: 'gt'
The following object is masked from 'package:testthat':
...
44. │ └─base::stop(...)
45. └─base::.handleSimpleError(...)
46. └─rlang (local) h(simpleError(msg, call))
47. └─handlers[1L]
48. └─cli::cli_abort(...)
49. └─rlang::abort(...)
[ FAIL 6 | WARN 4 | SKIP 19 | PASS 104 ]
Error: Test failures
Execution halted
```
guideR
- Version: 0.4.0
- GitHub: https://github.com/larmarange/guideR
- Source code: https://github.com/cran/guideR
- Date/Publication: 2025-04-22 12:00:02 UTC
- Number of recursive dependencies: 154
Run revdepcheck::cloud_details(, "guideR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘guideR-Ex.R’ failed
The error most likely occurred in:
Name: plot_inertia_from_tree
Title: Plot inertia, absolute loss and relative loss from a
classification tree
Aliases: plot_inertia_from_tree get_inertia_from_tree
Keywords: tree
** Examples
...
11 11 38.5 -2.96 -0.0713
12 12 36.8 -1.68 -0.0436
13 13 36.7 -0.113 -0.00307
14 14 32.7 -4.02 -0.109
15 15 31.6 -1.10 -0.0336
plot_inertia_from_tree(hc)
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
``
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
── Failure ('test-plot_inertia_from_tree.R:6:3'): plot_inertia_from_tree() does not produce an error ──
Expectedplot_inertia_from_tree(hc)to run without any errors.
i Actually got a <S7_error_method_not_found> with text:
Can't find method for generic&(e1, e2)`:
- e1:
- e2:
[ FAIL 1 | WARN 34 | SKIP 4 | PASS 60 ]
Error: Test failures
Execution halted
```
harmony
- Version: 1.2.3
- GitHub: https://github.com/immunogenomics/harmony
- Source code: https://github.com/cran/harmony
- Date/Publication: 2024-11-27 23:50:02 UTC
- Number of recursive dependencies: 210
Run revdepcheck::cloud_details(, "harmony") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘Seurat.Rmd’ using rmarkdown
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
...
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
In both
- checking installed package size ... NOTE
installed size is 14.8Mb
sub-directories of 1Mb or more:
data 5.0Mb
doc 2.5Mb
libs 7.1Mb
hatchR
- Version: 0.3.2
- GitHub: https://github.com/bmait101/hatchR
- Source code: https://github.com/cran/hatchR
- Date/Publication: 2025-03-05 15:40:02 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "hatchR") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...plot_geoms(actual) not identical to c("GeomPoint", "GeomLine", "GeomHline", "GeomHline") (expected`).
names(actual) is a character vector ('geom_point', 'geom_line', 'geom_hline', 'geom_hline...4')
names(expected) is absent
── Failure ('test-plot_phenology.R:10:3'): plot_phenology works ────────────────
p has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 35 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 8.7Mb
sub-directories of 1Mb or more:
data 6.5Mb
doc 1.9Mb
healthyR
- Version: 0.2.2
- GitHub: https://github.com/spsanderson/healthyR
- Source code: https://github.com/cran/healthyR
- Date/Publication: 2024-07-01 13:20:02 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "healthyR") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘getting-started.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 6.6Mb
sub-directories of 1Mb or more:
data 2.5Mb
doc 3.7Mb
healthyR.ai
- Version: 0.1.1
- GitHub: https://github.com/spsanderson/healthyR.ai
- Source code: https://github.com/cran/healthyR.ai
- Date/Publication: 2025-04-24 11:40:17 UTC
- Number of recursive dependencies: 203
Run revdepcheck::cloud_details(, "healthyR.ai") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘healthyR.ai-Ex.R’ failed
The error most likely occurred in:
Name: pca_your_recipe
Title: Perform PCA
Aliases: pca_your_recipe
** Examples
suppressPackageStartupMessages(library(timetk))
...
+ step_rm(matches("(iso$)|(xts$)|(hour)|(min)|(sec)|(am.pm)"))
output_list <- pca_your_recipe(rec_obj, .data = data_tbl)
Warning: ! The following columns have zero variance so scaling cannot be used:
date_col_day, date_col_mday, date_col_mweek, and date_col_mday7.
ℹ Consider using ?step_zv (?recipes::step_zv()) to remove those columns
before normalizing.
Error in pm[[2]] : subscript out of bounds
Calls: pca_your_recipe -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘auto-kmeans.Rmd’ using rmarkdown
--- finished re-building ‘auto-kmeans.Rmd’
--- re-building ‘getting-started.Rmd’ using rmarkdown
Quitting from getting-started.Rmd:106-113 [pca_your_rec]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
...
2. ├─plotly::ggplotly(loadings_plt)
3. └─plotly:::ggplotly.ggplot(loadings_plt)
4. └─plotly::gg2list(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘getting-started.Rmd’
--- re-building ‘kmeans-umap.Rmd’ using rmarkdown
```
healthyR.ts
- Version: 0.3.1
- GitHub: https://github.com/spsanderson/healthyR.ts
- Source code: https://github.com/cran/healthyR.ts
- Date/Publication: 2024-10-11 23:00:03 UTC
- Number of recursive dependencies: 209
Run revdepcheck::cloud_details(, "healthyR.ts") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘healthyR.ts-Ex.R’ failed
The error most likely occurred in:
Name: tidy_fft
Title: Tidy Style FFT
Aliases: tidy_fft
** Examples
suppressPackageStartupMessages(library(dplyr))
...
a <- tidy_fft(
+ .data = data_tbl,
+ .value_col = value,
+ .date_col = date_col,
+ .harmonics = 3,
+ .frequency = 12
+ )
Error in pm[[2]] : subscript out of bounds
Calls: tidy_fft -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘getting-started.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 5.3Mb
heatmaply
- Version: 1.5.0
- GitHub: https://github.com/talgalili/heatmaply
- Source code: https://github.com/cran/heatmaply
- Date/Publication: 2023-10-06 20:50:02 UTC
- Number of recursive dependencies: 108
Run revdepcheck::cloud_details(, "heatmaply") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(heatmaply)
Loading required package: plotly
Loading required package: ggplot2
Attaching package: 'plotly'
...
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─heatmaply:::predict_colors(ggplotly(g), plot_method = "ggplot")
7. ├─plotly::ggplotly(g)
8. └─plotly:::ggplotly.ggplot(g)
9. └─plotly::gg2list(...)
[ FAIL 58 | WARN 0 | SKIP 0 | PASS 193 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘heatmaply.Rmd’ using rmarkdown
Quitting from heatmaply.Rmd:108-111 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
Backtrace:
...
Error: processing vignette 'heatmaply.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘heatmaply.Rmd’
SUMMARY: processing the following file failed:
‘heatmaply.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
doc 5.1Mb
-
checking Rd files ... NOTE
checkRd: (-1) heatmaply.Rd:282: Lost braces
282 | row and column dendrograms. The default uses stats{reorder.dendrogram}}
| ^
checkRd: (-1) heatmapr.Rd:93: Lost braces
93 | \item{reorderfun}{function(d, w) of dendrogram and weights for reordering the row and column dendrograms. The default uses stats{reorder.dendrogram}}
| ^
checkRd: (-1) is.plotly.Rd:16: Lost braces
16 | Helpful for the plot_method in link{heatmaply}.
| ^
hesim
- Version: 0.5.5
- GitHub: https://github.com/hesim-dev/hesim
- Source code: https://github.com/cran/hesim
- Date/Publication: 2024-09-18 23:10:02 UTC
- Number of recursive dependencies: 103
Run revdepcheck::cloud_details(, "hesim") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hesim)
>
> test_check("hesim")
sample = 1
sample = 2
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ]
...
── Failure ('test-plot.R:95:3'): autoplot.stateprobs() allows confidence intervals ──
p$labels$fill not equal to "strategy_id".
target is NULL, current is character
── Failure ('test-plot.R:99:3'): autoplot.stateprobs() allows confidence intervals ──
p$labels$fill not equal to "strategy_id".
target is NULL, current is character
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 35.9Mb
sub-directories of 1Mb or more:
R 1.5Mb
doc 2.2Mb
libs 30.8Mb
hmsidwR
- Version: 1.1.2
- GitHub: https://github.com/Fgazzelloni/hmsidwR
- Source code: https://github.com/cran/hmsidwR
- Date/Publication: 2024-11-13 15:00:02 UTC
- Number of recursive dependencies: 175
Run revdepcheck::cloud_details(, "hmsidwR") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘hmsidwR.Rmd’ using rmarkdown
Quitting from hmsidwR.Rmd:51-84 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
...
Error: processing vignette 'hmsidwR.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘hmsidwR.Rmd’
SUMMARY: processing the following file failed:
‘hmsidwR.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 4.0Mb
-
checking data for non-ASCII characters ... NOTE
Note: found 1686 marked UTF-8 strings
hrbrthemes
- Version: 0.8.7
- GitHub: NA
- Source code: https://github.com/cran/hrbrthemes
- Date/Publication: 2024-03-04 00:20:02 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "hrbrthemes") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("hrbrthemes")
Loading required package: hrbrthemes
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 9 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-hrbrthemes.R:71:3', 'test-themes.R:4:3'
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hrbrthemes.R:16:3'): we can do something ─────────────────────
gg_check(gg_tmp) did not produce any messages.
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 9 ]
Deleting unused snapshots:
• themes/theme-ipsum-rc.svg
• themes/theme-ipsum.svg
Error: Test failures
Execution halted
```
HVT
- Version: 25.2.4
- GitHub: https://github.com/Mu-Sigma/HVT
- Source code: https://github.com/cran/HVT
- Date/Publication: 2025-06-10 12:40:21 UTC
- Number of recursive dependencies: 208
Run revdepcheck::cloud_details(, "HVT") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘HVT-Ex.R’ failed
The error most likely occurred in:
Name: clustHVT
Title: Performing Hierarchical Clustering Analysis
Aliases: clustHVT
Keywords: Clustering_Analysis
** Examples
...
scoring <- scoreHVT(dataset, hvt.results, analysis.plots = TRUE, names.column = dataset[,1])
Scale for colour is already present.
Adding another scale for colour, which will replace the existing scale.
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Error in pm[[2]] : subscript out of bounds
Calls: scoreHVT
Execution halted
```
hyperoverlap
- Version: 1.1.1
- GitHub: NA
- Source code: https://github.com/cran/hyperoverlap
- Date/Publication: 2021-08-10 08:30:05 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "hyperoverlap") for more info
Newly broken
- checking whether package ‘hyperoverlap’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘hyperoverlap’
See ‘/tmp/workdir/hyperoverlap/new/hyperoverlap.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 6.5Mb
sub-directories of 1Mb or more:
doc 6.3Mb
hypervolume
- Version: 3.1.5
- GitHub: https://github.com/bblonder/hypervolume
- Source code: https://github.com/cran/hypervolume
- Date/Publication: 2025-01-17 20:50:16 UTC
- Number of recursive dependencies: 142
Run revdepcheck::cloud_details(, "hypervolume") for more info
Newly broken
- checking whether package ‘hypervolume’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘hypervolume’
See ‘/tmp/workdir/hypervolume/new/hypervolume.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
doc 2.8Mb
libs 2.4Mb
hypsoLoop
- Version: 0.2.0
- GitHub: NA
- Source code: https://github.com/cran/hypsoLoop
- Date/Publication: 2022-02-08 09:00:02 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "hypsoLoop") for more info
Newly broken
- checking whether package ‘hypsoLoop’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘hypsoLoop’
See ‘/tmp/workdir/hypsoLoop/new/hypsoLoop.Rcheck/00install.out’ for details.
ImHD
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ImHD
- Date/Publication: 2023-09-12 06:12:44 UTC
- Number of recursive dependencies: 38
Run revdepcheck::cloud_details(, "ImHD") for more info
Newly broken
- checking whether package ‘ImHD’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘ImHD’
See ‘/tmp/workdir/ImHD/new/ImHD.Rcheck/00install.out’ for details.
implicitMeasures
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/implicitMeasures
- Date/Publication: 2022-02-16 13:40:13 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "implicitMeasures") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(implicitMeasures)
>
> test_check("implicitMeasures")
[ FAIL 7 | WARN 2 | SKIP 2 | PASS 69 ]
...
5. └─implicitMeasures::multi_dscore(iat_data, ds = "error-inflation")
6. └─ggplot2::geom_violin(draw_quantiles = TRUE)
7. └─ggplot2:::check_numeric(draw_quantiles)
8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
9. └─ggplot2:::stop_input_type(...)
10. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 7 | WARN 2 | SKIP 2 | PASS 69 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘IAT-example.Rmd’ using rmarkdown
imputeTS
- Version: 3.3
- GitHub: https://github.com/SteffenMoritz/imputeTS
- Source code: https://github.com/cran/imputeTS
- Date/Publication: 2022-09-09 06:52:55 UTC
- Number of recursive dependencies: 110
Run revdepcheck::cloud_details(, "imputeTS") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("imputeTS")
Loading required package: imputeTS
[ FAIL 43 | WARN 18 | SKIP 52 | PASS 411 ]
══ Skipped tests (52) ══════════════════════════════════════════════════════════
• On CRAN (52): 'test-ggplot_na_distribution.R:59:3',
...
expected: TRUE
── Failure ('test-ggplot_na_imputations.R:81:5'): Check that all parameters of plot run without error ──
is.list(...) is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 43 | WARN 18 | SKIP 52 | PASS 411 ]
Error: Test failures
Execution halted
```
In both
-
checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
--- re-building ‘Cheat_Sheet_imputeTS.pdf.asis’ using asis
--- finished re-building ‘Cheat_Sheet_imputeTS.pdf.asis’
--- re-building ‘imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx’ using tex
Error: processing vignette 'imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx' failed with diagnostics:
Running 'texi2dvi' on 'imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx' failed.
LaTeX errors:
! LaTeX Error: File `etex.sty' not found.
...
! Emergency stop.
l.5 \usepackage
[utf8]{inputenc}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx’
--- re-building ‘gallery_visualizations.Rmd’ using rmarkdown
```
-
checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 1.1Mb
libs 1.9Mb
incidence
- Version: 1.7.5
- GitHub: https://github.com/reconhub/incidence
- Source code: https://github.com/cran/incidence
- Date/Publication: 2024-05-31 10:10:02 UTC
- Number of recursive dependencies: 65
Run revdepcheck::cloud_details(, "incidence") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘incidence-Ex.R’ failed
The error most likely occurred in:
Name: get_fit
Title: Accessors for 'incidence_fit' objects
Aliases: get_fit get_fit.incidence_fit get_fit.incidence_fit_list
get_info get_info.incidence_fit get_info.incidence_fit_list
** Examples
...
+ })}
Loading required package: outbreaks
dat <- ebola_sim$linelist$date_of_onset
sex <- ebola_sim$linelist$gender
i.sex <- incidence(dat, interval = 7, group = sex)
fits <- fit_optim_split(i.sex, separate_split = TRUE)
Error in names(out$plot) <- names(res) :
invalid to use names()<- on an S4 object of class 'ggplot2::ggplot'
Calls: withAutoprint ... source -> withVisible -> eval -> eval -> fit_optim_split
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(incidence)
>
> test_check("incidence")
[ FAIL 1 | WARN 0 | SKIP 18 | PASS 213 ]
══ Skipped tests (18) ══════════════════════════════════════════════════════════
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-accessors.R:156:1'): (code run outside of test_that()) ───────
Error in names(out$plot) <- names(res): invalid to use names()<- on an S4 object of class 'ggplot2::ggplot'
Backtrace:
▆
1. └─incidence::fit_optim_split(i.sex.o) at test-accessors.R:156:1
[ FAIL 1 | WARN 0 | SKIP 18 | PASS 213 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘conversions.Rmd’ using rmarkdown
infer
- Version: 1.0.8
- GitHub: https://github.com/tidymodels/infer
- Source code: https://github.com/cran/infer
- Date/Publication: 2025-04-14 17:20:02 UTC
- Number of recursive dependencies: 125
Run revdepcheck::cloud_details(, "infer") for more info
Newly broken
-
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
• visualize/viz-assume-z-p-val-right.svg
• visualize/viz-assume-z.svg
• visualize/viz-fit-bare.svg
• visualize/viz-fit-conf-int.svg
• visualize/viz-fit-no-h0.svg
• visualize/viz-fit-p-val-both.svg
• visualize/viz-fit-p-val-left.svg
• visualize/viz-fit-p-val-right.svg
Error: Test failures
Execution halted
-
checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.infer_layer:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
inferCSN
- Version: 1.1.7
- GitHub: https://github.com/mengxu98/inferCSN
- Source code: https://github.com/cran/inferCSN
- Date/Publication: 2025-03-30 17:00:02 UTC
- Number of recursive dependencies: 186
Run revdepcheck::cloud_details(, "inferCSN") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘inferCSN-Ex.R’ failed
The error most likely occurred in:
Name: plot_dynamic_networks
Title: Plot dynamic networks
Aliases: plot_dynamic_networks
** Examples
data("example_matrix")
...
+ )
plot_dynamic_networks(
+ network,
+ celltypes_order = celltypes_order,
+ plot_type = "ggplotly"
+ )
Error in pm[[2]] : subscript out of bounds
Calls: plot_dynamic_networks -> -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 27.7Mb
sub-directories of 1Mb or more:
data 2.0Mb
libs 25.1Mb
inTextSummaryTable
- Version: 3.3.3
- GitHub: https://github.com/openanalytics/inTextSummaryTable
- Source code: https://github.com/cran/inTextSummaryTable
- Date/Publication: 2024-06-12 18:30:02 UTC
- Number of recursive dependencies: 109
Run revdepcheck::cloud_details(, "inTextSummaryTable") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(inTextSummaryTable)
>
> test_check("inTextSummaryTable")
[ FAIL 59 | WARN 0 | SKIP 0 | PASS 881 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
Error in geom_point(mapping = do.call(aes, c(aesBase, list(y = sym("meanVar")),
if (!is.null(colorVar) & useShape) list(shape = sym("colorVar")))),
position = pd, size = sizePoint, data = data): Problem while setting up geom aesthetics.
ℹ Error occurred in the 2nd layer.
Caused by error in list_sizes():
! x$size must be a vector, not a object.
[ FAIL 59 | WARN 0 | SKIP 0 | PASS 881 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘inTextSummaryTable-advanced.Rmd’ using rmarkdown
--- finished re-building ‘inTextSummaryTable-advanced.Rmd’
--- re-building ‘inTextSummaryTable-aesthetics.Rmd’ using rmarkdown
Quitting from inTextSummaryTable-aesthetics.Rmd:210-224 [aesthetics-defaultsVisualization]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
...
Error: processing vignette 'inTextSummaryTable-visualization.Rmd' failed with diagnostics:
The plot.margin theme element must be a vector of length 4
--- failed re-building ‘inTextSummaryTable-visualization.Rmd’
SUMMARY: processing the following files failed:
‘inTextSummaryTable-aesthetics.Rmd’
‘inTextSummaryTable-visualization.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 10.2Mb
sub-directories of 1Mb or more:
doc 9.7Mb
inventorize
- Version: 1.1.2
- GitHub: NA
- Source code: https://github.com/cran/inventorize
- Date/Publication: 2025-05-28 13:20:02 UTC
- Number of recursive dependencies: 68
Run revdepcheck::cloud_details(, "inventorize") for more info
Newly broken
- checking whether package ‘inventorize’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘inventorize’ ...
** package ‘inventorize’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error in pm[[2]] : subscript out of bounds
Error: unable to load R code in package ‘inventorize’
Execution halted
ERROR: lazy loading failed for package ‘inventorize’
* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’
CRAN
* installing *source* package ‘inventorize’ ...
** package ‘inventorize’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning in qgamma(service_level, alpha, beta) : NaNs produced
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (inventorize)
iNZightTS
- Version: 2.0.0
- GitHub: https://github.com/iNZightVIT/iNZightTS
- Source code: https://github.com/cran/iNZightTS
- Date/Publication: 2024-01-17 06:20:02 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "iNZightTS") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(iNZightTS)
>
> test_check("iNZightTS")
[ FAIL 6 | WARN 3 | SKIP 0 | PASS 91 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
▆
1. ├─base::plot(tm, names(tm)[-1], xlim = c(2000, 2011)) at test_subset.R:44:5
2. └─iNZightTS:::plot.inz_ts(tm, names(tm)[-1], xlim = c(2000, 2011))
3. ├─(function(.) structure(., use.plotly = ggplotable(.)))(...)
4. │ └─base::structure(., use.plotly = ggplotable(.))
5. └─S7:::Ops.S7_object(...)
[ FAIL 6 | WARN 3 | SKIP 0 | PASS 91 ]
Error: Test failures
Execution halted
```
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘plotly’
IRon
- Version: 0.1.4
- GitHub: https://github.com/nunompmoniz/IRon
- Source code: https://github.com/cran/IRon
- Date/Publication: 2023-01-20 07:20:06 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "IRon") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘IRon-Ex.R’ failed
The error most likely occurred in:
Name: sera
Title: Squared Error-Relevance Area (SERA)
Aliases: sera
** Examples
library(IRon)
...
19. │ └─self$stat$setup_params(data, self$stat_params)
20. │ └─ggplot2 (local) setup_params(...)
21. │ └─base::match.fun(method)
22. │ └─base::get(as.character(FUN), mode = "function", envir = envir)
23. └─base::.handleSimpleError(...)
24. └─rlang (local) h(simpleError(msg, call))
25. └─handlers[1L]
26. └─cli::cli_abort(...)
27. └─rlang::abort(...)
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
data 6.5Mb
isoorbi
- Version: 1.3.1
- GitHub: https://github.com/isoverse/isoorbi
- Source code: https://github.com/cran/isoorbi
- Date/Publication: 2024-08-27 05:10:03 UTC
- Number of recursive dependencies: 120
Run revdepcheck::cloud_details(, "isoorbi") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
...
── Failure ('test_plotting_functions.R:107:3'): orbi_plot_raw_data() tests ─────
orbi_plot_raw_data(df, y = "ratio") has type 'object', not 'list'.
── Failure ('test_plotting_functions.R:139:3'): orbi_plot_isotopocule_coverage() tests ──
fig has type 'object', not 'list'.
── Failure ('test_shotnoise_functions.R:94:3'): orbi_plot_shot_noise() tests ───
orbi_plot_shot_noise(df, "time.min") has type 'object', not 'list'.
[ FAIL 5 | WARN 1 | SKIP 0 | PASS 350 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 2.0Mb
extdata 3.3Mb
jskm
- Version: 0.5.11
- GitHub: https://github.com/jinseob2kim/jstable
- Source code: https://github.com/cran/jskm
- Date/Publication: 2025-03-20 03:10:02 UTC
- Number of recursive dependencies: 108
Run revdepcheck::cloud_details(, "jskm") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘jskm.Rmd’ using rmarkdown
karel
- Version: 0.1.1
- GitHub: https://github.com/mpru/karel
- Source code: https://github.com/cran/karel
- Date/Publication: 2022-03-26 21:50:02 UTC
- Number of recursive dependencies: 86
Run revdepcheck::cloud_details(, "karel") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘karel-Ex.R’ failed
The error most likely occurred in:
Name: acciones
Title: Acciones que Karel puede realizar
Aliases: acciones avanzar girar_izquierda poner_coso juntar_coso
girar_derecha darse_vuelta
** Examples
...
1. └─karel::ejecutar_acciones()
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. ├─gganimate::animate(...)
5. └─gganimate:::animate.gganim(...)
6. └─args$renderer(frames_vars$frame_source, args$fps)
7. └─gganimate:::png_dim(frames[1])
8. └─cli::cli_abort("Provided file ({file}) does not exist")
9. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(karel)
>
> test_check("karel")
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
5. ├─gganimate::animate(...)
6. └─gganimate:::animate.gganim(...)
7. └─args$renderer(frames_vars$frame_source, args$fps)
8. └─gganimate:::png_dim(frames[1])
9. └─cli::cli_abort("Provided file ({file}) does not exist")
10. └─rlang::abort(...)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘gifski’
All declared Imports should be used.
kDGLM
- Version: 1.2.7
- GitHub: https://github.com/silvaneojunior/kDGLM
- Source code: https://github.com/cran/kDGLM
- Date/Publication: 2025-03-20 01:00:03 UTC
- Number of recursive dependencies: 132
Run revdepcheck::cloud_details(, "kDGLM") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘kDGLM-Ex.R’ failed
The error most likely occurred in:
Name: forecast.fitted_dlm
Title: Auxiliary function for forecasting
Aliases: forecast.fitted_dlm
** Examples
...
Warning: aes_string() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the kDGLM package.
Please report the issue at https://github.com/silvaneojunior/kDGLM/issues.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Error in pm[[2]] : subscript out of bounds
Calls: forecast ... lapply -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘example1.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 10.9Mb
sub-directories of 1Mb or more:
doc 9.9Mb
lares
- Version: 5.2.13
- GitHub: https://github.com/laresbernardo/lares
- Source code: https://github.com/cran/lares
- Date/Publication: 2025-02-19 15:20:02 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "lares") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘lares-Ex.R’ failed
The error most likely occurred in:
Name: clusterKmeans
Title: Automated K-Means Clustering + PCA/t-SNE
Aliases: clusterKmeans
** Examples
Sys.unsetenv("LARES_FONT") # Temporal
...
If dataset has +5 columns, feel free to reduce dimenstionalities
with reduce_pca() or reduce_tsne() first
Find optimal k
check_k <- clusterKmeans(df, limit = 10)
Removed duplicate obserations: 1
Error: object properties are invalid:
- @family must be or , not
Execution halted
```
latentcor
- Version: 2.0.1
- GitHub: NA
- Source code: https://github.com/cran/latentcor
- Date/Publication: 2022-09-05 20:50:02 UTC
- Number of recursive dependencies: 141
Run revdepcheck::cloud_details(, "latentcor") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘latentcor-Ex.R’ failed
The error most likely occurred in:
Name: latentcor
Title: Estimate latent correlation for mixed types.
Aliases: latentcor
** Examples
Example 1 - truncated data type, same type for all variables
...
R_approx = latentcor(X = X, types = "tru", method = "approx")$R
proc.time() - start_time
user system elapsed
0.025 0.000 0.024
Heatmap for latent correlation matrix.
Heatmap_R_approx = latentcor(X = X, types = "tru", method = "approx",
+ showplot = TRUE)$plotR
Error in pm[[2]] : subscript out of bounds
Calls: latentcor ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) evaluation.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
...
checkRd: (-1) gen_data.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gen_data.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_types.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) interpolation.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) interpolation.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
latrend
- Version: 1.6.1
- GitHub: https://github.com/philips-software/latrend
- Source code: https://github.com/cran/latrend
- Date/Publication: 2024-05-15 11:50:02 UTC
- Number of recursive dependencies: 237
Run revdepcheck::cloud_details(, "latrend") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘latrend-Ex.R’ failed
The error most likely occurred in:
Name: qqPlot
Title: Quantile-quantile plot
Aliases: qqPlot
** Examples
data(latrendData)
...
26. │ └─ggplot2 (local) FUN(X[[i]], ...)
27. │ └─self$draw_group(group, panel_params, coord, ...)
28. │ └─ggplot2 (local) draw_group(...)
29. │ └─ggplot2 (local) draw_group(..., self = self)
30. └─base::.handleSimpleError(...)
31. └─rlang (local) h(simpleError(msg, call))
32. └─handlers[1L]
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘demo.Rmd’ using rmarkdown
lcars
- Version: 0.4.0
- GitHub: https://github.com/leonawicz/lcars
- Source code: https://github.com/cran/lcars
- Date/Publication: 2024-09-11 22:52:42 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "lcars") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘lcars-Ex.R’ failed
The error most likely occurred in:
Name: lcars_border
Title: LCARS border plot
Aliases: lcars_border
** Examples
lcars_border()
...
len_frac <- c(0.3, 0.5, 0.2, 0.4, 0.3, 0.2, 0.1, 0.3)
n_seg <- c(1, 2, 0, 8)
library(ggplot2)
g <- ggplot(iris, aes(Sepal.Length, Sepal.Width, color = Species)) +
+ geom_point() + facet_wrap(~Species, 2) + theme_lcars_light()
Error: object properties are invalid:
- @family must be or , not
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘lcars.Rmd’ using rmarkdown
Quitting from lcars.Rmd:20-54 [ex-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! object properties are invalid:
- @family must be or , not
...
Error: processing vignette 'lcars.Rmd' failed with diagnostics:
object properties are invalid:
- @family must be or , not
--- failed re-building ‘lcars.Rmd’
SUMMARY: processing the following file failed:
‘lcars.Rmd’
Error: Vignette re-building failed.
Execution halted
```
legendry
- Version: 0.2.2
- GitHub: https://github.com/teunbrand/legendry
- Source code: https://github.com/cran/legendry
- Date/Publication: 2025-05-30 09:20:09 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "legendry") for more info
Newly broken
-
checking whether the package can be loaded with stated dependencies ... WARNING
```
Loading required package: ggplot2
Error: package or namespace load failed for ‘legendry’:
.onLoad failed in loadNamespace() for 'legendry', details:
call: getFromNamespace("class_mapping", "ggplot2")
error: could not find function "getFromNamespace"
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
```
-
checking whether the package can be unloaded cleanly ... WARNING
Error: package or namespace load failed for ‘legendry’:
.onLoad failed in loadNamespace() for 'legendry', details:
call: getFromNamespace("class_mapping", "ggplot2")
error: could not find function "getFromNamespace"
Execution halted
-
checking whether the namespace can be loaded with stated dependencies ... WARNING
```
Error: .onLoad failed in loadNamespace() for 'legendry', details:
call: getFromNamespace("class_mapping", "ggplot2")
error: could not find function "getFromNamespace"
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
```
-
checking dependencies in R code ... NOTE
Error: .onLoad failed in loadNamespace() for 'legendry', details:
call: getFromNamespace("class_mapping", "ggplot2")
error: could not find function "getFromNamespace"
Call sequence:
3: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
2: runHook(".onLoad", env, package.lib, package)
1: loadNamespace(package, lib.loc)
Execution halted
-
checking R code for possible problems ... NOTE
Error: .onLoad failed in loadNamespace() for 'legendry', details:
call: getFromNamespace("class_mapping", "ggplot2")
error: could not find function "getFromNamespace"
Execution halted
lemon
- Version: 0.5.0
- GitHub: https://github.com/stefanedwards/lemon
- Source code: https://github.com/cran/lemon
- Date/Publication: 2024-11-10 18:20:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "lemon") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘lemon-Ex.R’ failed
The error most likely occurred in:
Name: brackets_horizontal
Title: Axis brackets instead of axis ticks and lines
Aliases: brackets_horizontal brackets_horisontal brackets_vertical
** Examples
library(ggplot2)
...
+ geom_point(position=position_jitter(width=0.3)) +
+ theme_bw() +
+ theme(panel.border = element_blank(), axis.line = element_line())
p
p <- p + coord_flex_cart(bottom=brackets_horizontal(length=unit(0.08, 'npc')))
p
Error in as.unit(e2) : object is not coercible to a unit
Calls: ... render_axis_h -> bottom -> bottom -> unit.c -> Ops.unit -> as.unit
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lemon)
>
>
> if (TRUE) {
- test_check("lemon")
- } #else {
...
- └─gtable::gtable_add_row_space(panel_table, theme$panel.spacing.y %||% theme$panel.spacing)
- └─cli::cli_abort("{.arg height} must be of length 1 or nrow - 1")
- └─rlang::abort(...)
[ FAIL 2 | WARN 14 | SKIP 3 | PASS 138 ]
Deleting unused snapshots:
• facet/facet-rep-wrap-spacing.svg
• facet_aux/facet-rep-wrap.svg
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘capped-axes.Rmd’ using rmarkdown
-
checking S3 generic/method consistency ... WARNING
```
ggplot_build:
function(plot, ...)
ggplot_build.lemon_plot:
function(plot)
ggplot_add:
function(object, plot, ...)
ggplot_add.axis_annotation:
function(object, plot, object_name)
ggplot_gtable:
function(plot)
ggplot_gtable.built_lemon:
function(data)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
lfproQC
- Version: 1.4.0
- GitHub: https://github.com/kabilansbio/lfproQC
- Source code: https://github.com/cran/lfproQC
- Date/Publication: 2024-10-10 13:10:02 UTC
- Number of recursive dependencies: 142
Run revdepcheck::cloud_details(, "lfproQC") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘lfproQC-Ex.R’ failed
The error most likely occurred in:
Name: Boxplot_data
Title: Creating Boxplot for a dataset
Aliases: Boxplot_data
** Examples
Boxplot_data(yeast_data)
Using Majority protein IDs as id variables
Warning: Removed 269 rows containing non-finite outside the scale range
(stat_boxplot()).
Error in pm[[2]] : subscript out of bounds
Calls: Boxplot_data -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘user_guide.Rmd’ using rmarkdown
Quitting from user_guide.Rmd:54-56 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
Backtrace:
...
Error: processing vignette 'user_guide.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘user_guide.Rmd’
SUMMARY: processing the following file failed:
‘user_guide.Rmd’
Error: Vignette re-building failed.
Execution halted
```
lgpr
- Version: 1.2.4
- GitHub: https://github.com/jtimonen/lgpr
- Source code: https://github.com/cran/lgpr
- Date/Publication: 2023-09-24 06:50:02 UTC
- Number of recursive dependencies: 100
Run revdepcheck::cloud_details(, "lgpr") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # Short tests
> # - focus on testing that everything runs
> # - should take less than minute
> library(testthat)
> library(lgpr)
Attached lgpr 1.2.4, using rstan 2.32.7. Type ?lgpr to get started.
>
...
── Failure ('test_misc-invgamma.R:34:3'): plotting the inverse gamma distribution works ──c1not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test_misc-invgamma.R:35:3'): plotting the inverse gamma distribution works ──c2` not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 446 ]
Error: Test failures
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 153.2Mb
sub-directories of 1Mb or more:
R 1.5Mb
libs 151.3Mb
-
checking Rd files ... NOTE
checkRd: (-1) prior_to_num.Rd:13: Lost braces; missing escapes or markup?
13 | {'uniform', 'normal', 'student-t', 'gamma', 'inv-gamma', 'log-normal'}
| ^
-
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
lionfish
- Version: 1.0.27
- GitHub: NA
- Source code: https://github.com/cran/lionfish
- Date/Publication: 2025-03-13 20:50:02 UTC
- Number of recursive dependencies: 125
Run revdepcheck::cloud_details(, "lionfish") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Bioprocess-Optimization.Rmd’ using knitr
--- finished re-building ‘Bioprocess-Optimization.Rmd’
--- re-building ‘General-interactivity.Rmd’ using knitr
--- finished re-building ‘General-interactivity.Rmd’
--- re-building ‘Market-segmentation.Rmd’ using knitr
```
listdown
- Version: 0.5.7
- GitHub: https://github.com/kaneplusplus/listdown
- Source code: https://github.com/cran/listdown
- Date/Publication: 2023-04-03 00:30:02 UTC
- Number of recursive dependencies: 70
Run revdepcheck::cloud_details(, "listdown") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘listdown-Ex.R’ failed
The error most likely occurred in:
Name: as_ld_yml
Title: Turn a Computational Component List into YAML with Class
Information
Aliases: as_ld_yml
** Examples
...
+ as_ld_yml(cc_list)
+ }
Loading required package: ggplot2
Error in parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)), :
:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Calls: as_ld_yml -> depth_first_copy -> eval -> parse
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.r’
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
> library(testthat)
> library(listdown)
>
> test_check("listdown")
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
...
5. └─listdown (local) depth_first_copy()
6. ├─base::eval(...)
7. └─base::parse(...)
── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ────────────────────────
ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds").
4 string mismatches
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
```
In both
-
checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘workflowr’
-
checking Rd files ... NOTE
checkRd: (-1) ld_build_html_site.Rd:41: Lost braces
41 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}}
| ^
checkRd: (-1) ld_create_doc.Rd:29: Lost braces
29 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}}
| ^
LMD
- Version: 1.0.0
- GitHub: https://github.com/shubhra-opensource/LMD
- Source code: https://github.com/cran/LMD
- Date/Publication: 2022-09-20 09:56:07 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "LMD") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘LMD-Ex.R’ failed
The error most likely occurred in:
Name: plot_lmd
Title: LMD Plot
Aliases: plot_lmd
Keywords: LMD PF Residue
** Examples
...
y = (2 / 3 ) sin(x * 30) + (2 / 3) * sin(x * 17.5) + (4 / 5) cos(x * 2)
plot_lmd(lmd(y))
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the LMD package.
Please report the issue at
https://github.com/shubhra-opensource/LMD/issues.
Error: object is invalid:
- every label must be named.
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘Getting_Started_with_LMD.Rmd’ using rmarkdown
lnmixsurv
- Version: 3.1.6
- GitHub: NA
- Source code: https://github.com/cran/lnmixsurv
- Date/Publication: 2024-09-03 15:20:08 UTC
- Number of recursive dependencies: 195
Run revdepcheck::cloud_details(, "lnmixsurv") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
<subscriptOutOfBoundsError/error/condition>
Error inpm[[2]]`: subscript out of bounds
Backtrace:
▆
- └─testthat::expect_snapshot(plot(mod1)) at test-survival_ln_mixture_em-methods.R:25:3
- └─rlang::cnd_signal(state$error)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 50 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘compare.Rmd’ using rmarkdown
In both
-
checking installed package size ... NOTE
installed size is 10.2Mb
sub-directories of 1Mb or more:
doc 4.0Mb
libs 5.8Mb
-
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘purrr’ ‘readr’
All declared Imports should be used.
-
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘rstanarm’
-
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
longevity
- Version: 1.2
- GitHub: https://github.com/lbelzile/longevity
- Source code: https://github.com/cran/longevity
- Date/Publication: 2025-05-12 02:10:02 UTC
- Number of recursive dependencies: 52
Run revdepcheck::cloud_details(, "longevity") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘longevity-Ex.R’ failed
The error most likely occurred in:
Name: autoplot.elife_par
Title: Goodness-of-fit plots for parametric models
Aliases: autoplot.elife_par plot.elife_par
** Examples
set.seed(1234)
...
+ thresh = 0,
+ event = ifelse(samp$rcens, 0L, 1L),
+ type = "right",
+ family = "exp",
+ export = TRUE)
plot(fitted, plot.type = "ggplot")
Error in get("print.ggplot", envir = loadNamespace("ggplot2")) :
object 'print.ggplot' not found
Calls: plot -> plot.elife_par -> lapply -> match.fun -> get
Execution halted
```
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("longevity")
- }
test-S3methods.R.............. 0 tests
test-S3methods.R.............. 0 tests
...
test-S3methods.R.............. 0 tests
test-S3methods.R.............. 0 tests
test-S3methods.R.............. 0 tests
test-S3methods.R.............. 0 tests
test-S3methods.R.............. 0 tests
test-S3methods.R.............. 0 tests
test-S3methods.R.............. 0 tests Error in get("print.ggplot", envir = loadNamespace("ggplot2")) :
object 'print.ggplot' not found
Calls: ... plot -> plot.elife_par -> lapply -> match.fun -> get
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 10.0Mb
sub-directories of 1Mb or more:
data 7.0Mb
libs 2.3Mb
LSX
- Version: 1.4.4
- GitHub: https://github.com/koheiw/LSX
- Source code: https://github.com/cran/LSX
- Date/Publication: 2025-05-23 09:02:06 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "LSX") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> require(testthat)
Loading required package: testthat
> require(quanteda)
Loading required package: quanteda
Package version: 4.3.0
Unicode version: 15.1
...
── Failure ('test-textplot.R:84:5'): textplot_components() works ───────────────
class(textplot_components(lss_svd, 3, scale = "relative")) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-textplot.R:109:5'): textplot_terms works even when frequency has zeros (#85) ──
class(textplot_terms(lss)) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 24 | WARN 0 | SKIP 10 | PASS 221 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 2096 marked UTF-8 strings
ltertools
- Version: 2.0.0
- GitHub: https://github.com/lter/ltertools
- Source code: https://github.com/cran/ltertools
- Date/Publication: 2025-03-26 18:30:02 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "ltertools") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-site_timeline.R:15:3'): Outputs are correct ──────────────────
class(time_gg) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
```
manydata
- Version: 1.0.2
- GitHub: https://github.com/globalgov/manydata
- Source code: https://github.com/cran/manydata
- Date/Publication: 2025-06-03 08:40:02 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "manydata") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(manydata)
Loading required package: cli
Loading required package: dplyr
Attaching package: 'dplyr'
...
── Failure ('test_compare.R:6:3'): plot for compare_categories returns the correct output format ──
db has length 1, not length 11.
── Failure ('test_compare.R:48:3'): compare_overlap() and return the correct output format ──
pl has type 'object', not 'list'.
── Failure ('test_compare.R:60:3'): compare_missing() and plot_missing() returns the correct output format ──
pl has type 'object', not 'list'.
[ FAIL 5 | WARN 1 | SKIP 3 | PASS 122 ]
Error: Test failures
Execution halted
```
manymodelr
- Version: 0.3.9
- GitHub: https://github.com/Nelson-Gon/manymodelr
- Source code: https://github.com/cran/manymodelr
- Date/Publication: 2025-03-20 07:20:02 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "manymodelr") for more info
Newly broken
- checking whether package ‘manymodelr’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘manymodelr’
See ‘/tmp/workdir/manymodelr/new/manymodelr.Rcheck/00install.out’ for details.
manynet
- Version: 1.3.2
- GitHub: https://github.com/stocnet/manynet
- Source code: https://github.com/cran/manynet
- Date/Publication: 2024-11-05 20:50:02 UTC
- Number of recursive dependencies: 142
Run revdepcheck::cloud_details(, "manynet") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘manynet-Ex.R’ failed
The error most likely occurred in:
Name: make_play
Title: Making diffusion models on networks
Aliases: make_play play_diffusion play_diffusions
** Examples
smeg <- generate_smallworld(15, 0.025)
...
! Only know how to add and/or objects
Backtrace:
▆
1. ├─base::plot(play_diffusion(smeg, recovery = 0.4))
2. └─manynet:::plot.diff_model(play_diffusion(smeg, recovery = 0.4))
3. └─manynet:::+.ggplot(...)
4. └─patchwork::wrap_plots(e1, e2, ...)
5. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects")
6. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(manynet)
>
> test_check("manynet")
Starting 2 test processes
[ FAIL 3 | WARN 0 | SKIP 21 | PASS 548 ]
...
1. ├─base::plot(node_degree(ison_adolescents)) at test-measure_centrality.R:87:3
2. └─manynet:::plot.node_measure(node_degree(ison_adolescents))
3. └─manynet:::+.ggplot(...)
4. └─patchwork::wrap_plots(e1, e2, ...)
5. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects")
6. └─rlang::abort(...)
[ FAIL 3 | WARN 0 | SKIP 21 | PASS 548 ]
Error: Test failures
Execution halted
```
In both
-
checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘Rgraphviz’
-
checking installed package size ... NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
R 1.5Mb
tutorials 1.9Mb
-
checking data for non-ASCII characters ... NOTE
Note: found 7 marked UTF-8 strings
marquee
- Version: 1.0.0
- GitHub: https://github.com/r-lib/marquee
- Source code: https://github.com/cran/marquee
- Date/Publication: 2025-01-20 16:01:56 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "marquee") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘marquee-Ex.R’ failed
The error most likely occurred in:
Name: element_marquee
Title: ggplot2 theme element supporting marquee syntax
Aliases: element_marquee
** Examples
Don't show:
...
+ What more could you possibly want?") +
+ theme(title = element_marquee())
+ ## Don't show:
+ }) # examplesIf
library(ggplot2)
p <- ggplot(mtcars) + geom_point(aes(mpg, disp)) + labs(title = "A {.red marquee} title\n Look at this bullet list\n\n great, huh?") +
+ theme_gray(base_size = 6) + theme(title = element_marquee())
plot(p)
Error: object must be an , not a S3
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
doc 2.4Mb
libs 2.6Mb
MaxWiK
- Version: 1.0.5
- GitHub: NA
- Source code: https://github.com/cran/MaxWiK
- Date/Publication: 2024-11-25 11:40:13 UTC
- Number of recursive dependencies: 54
Run revdepcheck::cloud_details(, "MaxWiK") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘User-Guide.Rmd’ using rmarkdown
# Input data
Data format
The data format of input should be numerical only in the form of data frame, for example:
``` r
...
Error: processing vignette 'User-Guide.Rmd' failed with diagnostics:
object must be an , not a S3
--- failed re-building ‘User-Guide.Rmd’
SUMMARY: processing the following file failed:
‘User-Guide.Rmd’
Error: Vignette re-building failed.
Execution halted
```
MBMethPred
- Version: 0.1.4.2
- GitHub: https://github.com/sharifrahmanie/MBMethPred
- Source code: https://github.com/cran/MBMethPred
- Date/Publication: 2023-09-18 14:10:09 UTC
- Number of recursive dependencies: 138
Run revdepcheck::cloud_details(, "MBMethPred") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MBMethPred)
>
> test_check("MBMethPred")
y_pred
y_true Group3 SHH Group4
Group3 1 0 0
...
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-BoxPlot.R:8:3'): MakeBoxPlot returns correct type ────────────
BoxPlot(File = data) has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 10.2Mb
sub-directories of 1Mb or more:
R 3.0Mb
data 7.0Mb
mcp
- Version: 0.3.4
- GitHub: https://github.com/lindeloev/mcp
- Source code: https://github.com/cran/mcp
- Date/Publication: 2024-03-17 20:10:02 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "mcp") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘mcp-Ex.R’ failed
The error most likely occurred in:
Name: plot_pars
Title: Plot individual parameters
Aliases: plot_pars
** Examples
Typical usage. demo_fit is an mcpfit object.
plot_pars(demo_fit)
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the bayesplot package.
Please report the issue at https://github.com/stan-dev/bayesplot/issues/.
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mcp)
>
> test_check("mcp")
[ FAIL 24 | WARN 2 | SKIP 6 | PASS 749 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
...
Backtrace:
▆
1. └─mcp:::test_runs(model, ...) at tests/testthat/helper-runs.R:338:7
2. └─mcp:::test_plot_pars(fit) at tests/testthat/helper-runs.R:112:7
3. └─mcp::plot_pars(fit, type = "dens_overlay") at tests/testthat/helper-runs.R:171:3
4. └─S7:::Ops.S7_object(...)
[ FAIL 24 | WARN 2 | SKIP 6 | PASS 749 ]
Error: Test failures
Execution halted
```
mcStats
- Version: 0.1.2
- GitHub: NA
- Source code: https://github.com/cran/mcStats
- Date/Publication: 2020-02-26 06:50:02 UTC
- Number of recursive dependencies: 52
Run revdepcheck::cloud_details(, "mcStats") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mcStats)
>
> test_check("mcStats")
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
* Removed 420 rows containing missing values or values outside the scale range
(geom_area()).
* Removed 442 rows containing missing values or values outside the scale range
(geom_area()).
* Removed 184 rows containing missing values or values outside the scale range
(geom_area()).
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ]
Error: Test failures
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
meme
- Version: 0.2.3
- GitHub: https://github.com/GuangchuangYu/meme
- Source code: https://github.com/cran/meme
- Date/Publication: 2021-04-23 10:00:02 UTC
- Number of recursive dependencies: 63
Run revdepcheck::cloud_details(, "meme") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘meme.Rmd’ using rmarkdown
MendelianRandomization
- Version: 0.10.0
- GitHub: NA
- Source code: https://github.com/cran/MendelianRandomization
- Date/Publication: 2024-04-12 10:10:02 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "MendelianRandomization") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MendelianRandomization-Ex.R’ failed
The error most likely occurred in:
Name: mr_plot
Title: Draw a scatter plot of the genetic associations and/or causal
estimates
Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method
mr_plot,MRMVInput-method
** Examples
mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse),
+ line="egger", orientate = TRUE)
Error in pm[[2]] : subscript out of bounds
Calls: mr_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
R 1.0Mb
libs 4.2Mb
metagam
- Version: 0.4.0
- GitHub: https://github.com/Lifebrain/metagam
- Source code: https://github.com/cran/metagam
- Date/Publication: 2023-05-05 18:20:06 UTC
- Number of recursive dependencies: 116
Run revdepcheck::cloud_details(, "metagam") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘dominance.Rmd’ using rmarkdown
MetAlyzer
- Version: 1.1.0
- GitHub: https://github.com/nilsmechtel/MetAlyzer
- Source code: https://github.com/cran/MetAlyzer
- Date/Publication: 2024-12-06 14:00:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "MetAlyzer") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MetAlyzer-Ex.R’ failed
The error most likely occurred in:
Name: plotly_scatter
Title: Plotly Log2FC Scatter Plot
Aliases: plotly_scatter
** Examples
...
Warning: Partial NA coefficients for 2 probe(s)
p_scatter <- plotly_scatter(metalyzer_se)
Warning in geom_rect(data = rects_df, inherit.aes = FALSE, aes(xmin = .data$Start, :
Ignoring unknown aesthetics: text
Warning in geom_point(size = 0.5, aes(text = paste0(.data$Metabolite, "\nClass: ", :
Ignoring unknown aesthetics: text
Error in pm[[2]] : subscript out of bounds
Calls: plotly_scatter -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
MetaNet
- Version: 0.2.5
- GitHub: https://github.com/Asa12138/MetaNet
- Source code: https://github.com/cran/MetaNet
- Date/Publication: 2025-04-10 06:30:02 UTC
- Number of recursive dependencies: 173
Run revdepcheck::cloud_details(, "MetaNet") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MetaNet-Ex.R’ failed
The error most likely occurred in:
Name: as.ggig
Title: Transfer an igraph object to a ggig
Aliases: as.ggig
** Examples
as.ggig(co_net, coors = c_net_layout(co_net)) -> ggig
...
5. └─ggplot2::build_ggplot(plot)
6. ├─S7::S7_dispatch()
7. └─ggplot2 (local) method(build_ggplot, ggplot2::ggplot)(...)
8. └─npscales$set_palettes(plot@theme)
9. └─ggplot2 (local) set_palettes(..., self = self)
10. ├─scales::as_continuous_pal(elem)
11. └─scales:::as_continuous_pal.default(elem)
12. └─cli::cli_abort("Cannot convert {.arg x} to a continuous palette.")
13. └─rlang::abort(...)
Execution halted
```
metaquant
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/metaquant
- Date/Publication: 2025-02-11 17:00:02 UTC
- Number of recursive dependencies: 75
Run revdepcheck::cloud_details(, "metaquant") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘metaquant-Ex.R’ failed
The error most likely occurred in:
Name: plotdist
Title: Visualising Densities using Quantiles
Aliases: plotdist
** Examples
Example dataset of 3-point summaries (min, med, max) for 2 groups
...
+ display.legend = TRUE,
+ pooled.dist = TRUE
+ )
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the metaquant package.
Please report the issue to the authors.
Error in pm[[2]] : subscript out of bounds
Calls: plotdist -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
metR
- Version: 0.18.1
- GitHub: https://github.com/eliocamp/metR
- Source code: https://github.com/cran/metR
- Date/Publication: 2025-05-13 06:30:01 UTC
- Number of recursive dependencies: 119
Run revdepcheck::cloud_details(, "metR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘metR-Ex.R’ failed
The error most likely occurred in:
Name: geom_contour_fill
Title: Filled 2d contours of a 3d surface
Aliases: geom_contour_fill stat_contour_fill StatContourFill
Keywords: datasets
** Examples
...
ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill() + geom_contour(color = "black",
+ size = 0.1)
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill(aes(fill = after_stat(level)))
ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill(aes(fill = after_stat(level_d)))
Error in train(..., self = self) :
unused argument (call = scale_fill_discretised())
Calls: ... -> train_df -> -> train ->
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(metR)
> # library(vdiffr)
>
> on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false")))
> if (on_cran) data.table::setDTthreads(2)
>
...
- ├─ggplot2::guide_gengrob(params, theme)
- └─metR:::guide_gengrob.colorstrip(params, theme)
- └─grid::convertWidth(...)
- └─grid::convertUnit(...)
- ├─grid:::upgradeUnit(x)
- └─grid:::upgradeUnit.default(x)
[ FAIL 1 | WARN 2 | SKIP 19 | PASS 184 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Visualization-tools.Rmd’ using knitr
Quitting from Visualization-tools.Rmd:181-184 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in train():
! unused argument (call = scale_fill_discretised())
Backtrace:
...
--- failed re-building ‘Visualization-tools.Rmd’
--- re-building ‘Working-with-data.Rmd’ using knitr
--- finished re-building ‘Working-with-data.Rmd’
SUMMARY: processing the following file failed:
‘Visualization-tools.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 6.6Mb
sub-directories of 1Mb or more:
R 1.5Mb
data 2.0Mb
doc 1.8Mb
mgcViz
- Version: 0.2.0
- GitHub: https://github.com/mfasiolo/mgcViz
- Source code: https://github.com/cran/mgcViz
- Date/Publication: 2025-04-11 11:30:07 UTC
- Number of recursive dependencies: 110
Run revdepcheck::cloud_details(, "mgcViz") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘mgcviz.rmd’ using rmarkdown
MIC
- Version: 1.1.0
- GitHub: https://github.com/agerada/MIC
- Source code: https://github.com/cran/MIC
- Date/Publication: 2025-06-05 04:20:06 UTC
- Number of recursive dependencies: 144
Run revdepcheck::cloud_details(, "MIC") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MIC-Ex.R’ failed
The error most likely occurred in:
Name: plot.mic_validation
Title: Plot MIC validation results
Aliases: plot.mic_validation
** Examples
gold_standard <- c("<0.25", "8", "64", ">64")
...
6. ├─S7::S7_dispatch()
7. └─ggplot2 (local) method(gtable_ggplot, ggplot2::ggplot_built)(data = <ggpl2::_>)
8. └─layout$render(geom_grobs, data, theme, plot@labels)
9. └─ggplot2 (local) render(..., self = self)
10. └─self$facet$draw_panels(...)
11. └─lemon (local) draw_panels(...)
12. └─gtable::gtable_add_col_space(panel_table, theme$panel.spacing.x %||% theme$panel.spacing)
13. └─cli::cli_abort("{.arg width} must be of length 1 or ncol - 1")
14. └─rlang::abort(...)
Execution halted
```
migraph
- Version: 1.4.5
- GitHub: https://github.com/stocnet/migraph
- Source code: https://github.com/cran/migraph
- Date/Publication: 2024-12-02 10:00:10 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "migraph") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘migraph-Ex.R’ failed
The error most likely occurred in:
Name: regression
Title: Linear and logistic regression for network data
Aliases: regression net_regression
** Examples
networkers <- ison_networkers %>% to_subgraph(Discipline == "Sociology")
...
4 sim Citations 39.4 3.13 0.1
glance(model1)
A tibble: 1 × 8
r.squared adj.r.squared sigma statistic p.value df df.residual nobs
1 0.0674 0.0570 48.9 6.46 0.000309 3 268 272
plot(model1)
Error in loadNamespace(x) : there is no package called ‘patchwork’
Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(manynet)
> library(migraph)
>
> test_check("migraph")
Starting 2 test processes
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 34 ]
...
- ├─migraph:::plot.network_test(cugtest)
- │ └─manynet:::
+.ggplot(...)
- └─base::loadNamespace(x)
- └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
- └─base (local) withOneRestart(expr, restarts[[1L]])
- └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
```
mikropml
- Version: 1.6.1
- GitHub: https://github.com/SchlossLab/mikropml
- Source code: https://github.com/cran/mikropml
- Date/Publication: 2023-08-21 15:10:05 UTC
- Number of recursive dependencies: 127
Run revdepcheck::cloud_details(, "mikropml") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mikropml)
> test_check("mikropml")
Fraction of data in the training set: 0.778
Groups in the training set: A C D
Groups in the testing set: B
Fraction of data in the training set: 0.778
...names(expected)is absent
── Failure ('test-plot.R:140:3'): plot_mean_prc uses geom ribbon, line, and hline ──
... %>% unlist() (actual) not equal to c(...) (expected`).
names(actual) is a character vector ('geom_ribbon1', 'geom_ribbon2', 'geom_ribbon3', 'geom_ribbon4', 'geom_line1', ...)
names(expected) is absent
[ FAIL 2 | WARN 19 | SKIP 12 | PASS 314 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) create_grouped_data_partition.Rd:60: Lost braces; missing escapes or markup?
60 | Zena Lapp, {zenalapp@umich.edu}
| ^
checkRd: (-1) create_grouped_data_partition.Rd:62: Lost braces; missing escapes or markup?
62 | Kelly Sovacool, {sovacool@umich.edu}
| ^
checkRd: (-1) create_grouped_k_multifolds.Rd:30: Lost braces; missing escapes or markup?
30 | Zena Lapp, {zenalapp@umich.edu}
| ^
checkRd: (-1) get_partition_indices.Rd:58: Lost braces; missing escapes or markup?
58 | Kelly Sovacool, {sovacool@umich.edu}
| ^
checkRd: (-1) set_hparams_glmnet.Rd:16: Lost braces; missing escapes or markup?
16 | Zena Lapp, {zenalapp@umich.edu}
| ^
MiMIR
- Version: 1.5
- GitHub: NA
- Source code: https://github.com/cran/MiMIR
- Date/Publication: 2024-02-01 08:50:02 UTC
- Number of recursive dependencies: 192
Run revdepcheck::cloud_details(, "MiMIR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:
Name: LOBOV_accuracies
Title: LOBOV_accuracies
Aliases: LOBOV_accuracies
** Examples
require(pROC)
...
56 metabolites x 500 samples
| Pruning samples on5SD:
56 metabolites x 500 samples
| Performing scaling ... DONE!
| Imputation ... DONE!
p_avail<-colnames(b_p)[c(1:5)]
LOBOV_accuracies(sur$surrogates, b_p, p_avail, MiMIR::acc_LOBOV)
Error in pm[[2]] : subscript out of bounds
Calls: LOBOV_accuracies -> -> ggplotly.ggplot -> gg2list
Execution halted
```
miRetrieve
- Version: 1.3.4
- GitHub: NA
- Source code: https://github.com/cran/miRetrieve
- Date/Publication: 2021-09-18 17:30:02 UTC
- Number of recursive dependencies: 123
Run revdepcheck::cloud_details(, "miRetrieve") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(miRetrieve)
>
> test_check("miRetrieve")
[ FAIL 7 | WARN 15 | SKIP 0 | PASS 196 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
y[1]: "list"
── Failure ('test-plotscore.R:44:5'): Tests plotting scores ────────────────────
typeof(plot_own) not equal to "list".
1/1 mismatches
x[1]: "object"
y[1]: "list"
[ FAIL 7 | WARN 15 | SKIP 0 | PASS 196 ]
Error: Test failures
Execution halted
```
MiscMetabar
- Version: 0.14.2
- GitHub: https://github.com/adrientaudiere/MiscMetabar
- Source code: https://github.com/cran/MiscMetabar
- Date/Publication: 2025-03-20 15:20:02 UTC
- Number of recursive dependencies: 420
Run revdepcheck::cloud_details(, "MiscMetabar") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MiscMetabar-Ex.R’ failed
The error most likely occurred in:
Name: upset_pq
Title: Make upset plot for phyloseq object.
Aliases: upset_pq
** Examples
if (requireNamespace("ComplexUpset")) {
...
27. │ └─ggplot2 (local) method(merge_element, list(ggplot2::element, class_any))(...)
28. │ └─S7::props(old, idx)
29. │ └─S7::check_is_S7(object)
30. │ └─base::stop(msg, call. = FALSE)
31. └─base::.handleSimpleError(...)
32. └─rlang (local) h(simpleError(msg, call))
33. └─handlers[1L]
34. └─cli::cli_abort(...)
35. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
graph_test_pq(data_fungi_mini, fact = "Tree_name") produced warnings.
── Failure ('test_figures_beta_div.R:258:5'): upset_pq works with data_fungi dataset ──
suppressMessages(upset_pq(data_fungi_mini, "Height")) produced warnings.
[ FAIL 2 | WARN 4 | SKIP 74 | PASS 80 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘MiscMetabar.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
data 2.0Mb
extdata 1.2Mb
miscset
- Version: 1.1.0
- GitHub: https://github.com/setempler/miscset
- Source code: https://github.com/cran/miscset
- Date/Publication: 2017-02-24 16:46:57
- Number of recursive dependencies: 109
Run revdepcheck::cloud_details(, "miscset") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘miscset.Rmd’ using rmarkdown
misspi
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/misspi
- Date/Publication: 2023-10-17 09:50:02 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "misspi") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘misspi-Ex.R’ failed
The error most likely occurred in:
Name: evaliq
Title: Evaluate the Imputation Quality
Aliases: evaliq
** Examples
A very quick example
...
Default plot
er.eval <- evaliq(x.true[na.idx], x.est[na.idx])
geom_smooth() using formula = 'y ~ x'
Interactive plot
er.eval <- evaliq(x.true[na.idx], x.est[na.idx], interactive = TRUE)
geom_smooth() using formula = 'y ~ x'
Error in pm[[2]] : subscript out of bounds
Calls: evaliq -> print -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
mistral
- Version: 2.2.2
- GitHub: NA
- Source code: https://github.com/cran/mistral
- Date/Publication: 2024-01-17 13:40:02 UTC
- Number of recursive dependencies: 71
Run revdepcheck::cloud_details(, "mistral") for more info
Newly broken
- checking whether package ‘mistral’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘mistral’
See ‘/tmp/workdir/mistral/new/mistral.Rcheck/00install.out’ for details.
misty
- Version: 0.7.2
- GitHub: NA
- Source code: https://github.com/cran/misty
- Date/Publication: 2025-05-20 16:20:02 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "misty") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘misty-Ex.R’ failed
The error most likely occurred in:
Name: na.pattern
Title: Missing Data Pattern
Aliases: na.pattern
** Examples
Example 1: Compute a summary of missing data patterns
...
26. └─ggplot2 (local) extract_key(...)
27. └─Guide$extract_key(scale, aesthetic, ...)
28. └─ggplot2 (local) extract_key(...)
29. └─scale$get_labels(breaks)
30. └─ggplot2 (local) get_labels(..., self = self)
31. └─self$scale$get_labels(breaks)
32. └─ggplot2 (local) get_labels(..., self = self)
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 4.0Mb
help 1.5Mb
mizer
- Version: 2.5.3
- GitHub: https://github.com/sizespectrum/mizer
- Source code: https://github.com/cran/mizer
- Date/Publication: 2024-10-17 07:10:09 UTC
- Number of recursive dependencies: 107
Run revdepcheck::cloud_details(, "mizer") for more info
Newly broken
- checking tests ... ERROR
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
• plots/plot-feeding-level.svg
• plots/plot-single-growth-curve.svg
• plots/plot-spectra.svg
• plots/plot-yield-by-gear.svg
• plots/plot-yield.svg
• plots/plotfishing-mortality.svg
• plots/plotfmort-truncated.svg
• plots/plotpredation-mortality.svg
Error: Test failures
Execution halted
In both
- checking installed package size ... NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
help 1.8Mb
MKpower
- Version: 1.0
- GitHub: https://github.com/stamats/MKpower
- Source code: https://github.com/cran/MKpower
- Date/Publication: 2024-09-23 14:30:01 UTC
- Number of recursive dependencies: 122
Run revdepcheck::cloud_details(, "MKpower") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MKpower-Ex.R’ failed
The error most likely occurred in:
Name: qqunif
Title: qq-Plots for Uniform Distribution
Aliases: qqunif qqunif.default qqunif.sim.power.ttest
qqunif.sim.power.wtest
Keywords: hplot
** Examples
...
26. │ └─ggplot2 (local) FUN(X[[i]], ...)
27. │ └─self$draw_group(group, panel_params, coord, ...)
28. │ └─ggplot2 (local) draw_group(...)
29. │ └─ggplot2 (local) draw_group(..., self = self)
30. └─base::.handleSimpleError(...)
31. └─rlang (local) h(simpleError(msg, call))
32. └─handlers[1L]
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
Execution halted
```
mlr3spatiotempcv
- Version: 2.3.2
- GitHub: https://github.com/mlr-org/mlr3spatiotempcv
- Source code: https://github.com/cran/mlr3spatiotempcv
- Date/Publication: 2024-11-29 13:10:02 UTC
- Number of recursive dependencies: 165
Run revdepcheck::cloud_details(, "mlr3spatiotempcv") for more info
Newly broken
- checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
- library("checkmate")
- library("testthat")
- library("mlr3spatiotempcv")
- test_check("mlr3spatiotempcv")
- }
Loading required package: mlr3
...
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg
• 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg
• 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg
• 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg
• autoplot_buffer/spcvbuffer-fold-1-2.svg
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
data 3.5Mb
modeldb
- Version: 0.3.0
- GitHub: https://github.com/tidymodels/modeldb
- Source code: https://github.com/cran/modeldb
- Date/Publication: 2023-11-01 14:30:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "modeldb") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_kmeans_viz.R:5:3'): plot_kmeans() returns a ggplot2 object ───
class(plot_kmeans(mtcars, mpg, wt, group = am)) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 1 | WARN 33 | SKIP 0 | PASS 18 ]
Error: Test failures
Execution halted
```
modeltime.resample
- Version: 0.2.3
- GitHub: https://github.com/business-science/modeltime.resample
- Source code: https://github.com/cran/modeltime.resample
- Date/Publication: 2023-04-12 15:50:02 UTC
- Number of recursive dependencies: 234
Run revdepcheck::cloud_details(, "modeltime.resample") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> # Machine Learning
> library(tidymodels)
── Attaching packages ────────────────────────────────────── tidymodels 1.3.0 ──
✔ broom 1.0.8 ✔ recipes 1.3.1
✔ dials 1.4.0 ✔ rsample 1.3.0
...
▆
- ├─m750_models_resample %>% ... at test-modeltime_fit_resamples.R:116:5
- └─modeltime.resample::plot_modeltime_resamples(., .interactive = TRUE)
- ├─plotly::ggplotly(g)
- └─plotly:::ggplotly.ggplot(g)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 16 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘crayon’ ‘dials’ ‘glue’ ‘parsnip’
All declared Imports should be used.
Momocs
- Version: 1.4.1
- GitHub: https://github.com/MomX/Momocs
- Source code: https://github.com/cran/Momocs
- Date/Publication: 2023-11-13 11:13:30 UTC
- Number of recursive dependencies: 144
Run revdepcheck::cloud_details(, "Momocs") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘Momocs-Ex.R’ failed
The error most likely occurred in:
Name: plot_CV
Title: Plots a cross-validation table as an heatmap
Aliases: plot_CV plot_CV.default plot_CV.LDA
** Examples
h <- hearts %>%
...
h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
you can customize the returned gg with some ggplot2 functions
h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
or build your own using the prepared data_frame:
df <- h %>% plot_CV() %$% data
Error in eval(substitute(expr), data, enclos = parent.frame()) :
invalid 'envir' argument of type 'object'
Calls: %$% -> -> with.default -> eval
Execution halted
```
mpactr
- Version: 0.2.1
- GitHub: https://github.com/mums2/mpactr
- Source code: https://github.com/cran/mpactr
- Date/Publication: 2025-03-29 00:30:05 UTC
- Number of recursive dependencies: 142
Run revdepcheck::cloud_details(, "mpactr") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...expected[2:2]: "ggplot"
── Failure ('test-quality_control.R:44:3'): qc plot returns a generates a plot ──
class(plot) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 165 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘downstream_analyses.Rmd’ using rmarkdown
Warning: Duplicated chunk option(s) 'warning' in both chunk header and pipe comments of the chunk 'unnamed-chunk-18'.
In both
- checking installed package size ... NOTE
installed size is 9.0Mb
sub-directories of 1Mb or more:
doc 4.9Mb
extdata 1.9Mb
libs 1.6Mb
MRZero
- Version: 0.2.0
- GitHub: NA
- Source code: https://github.com/cran/MRZero
- Date/Publication: 2024-04-14 09:30:03 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "MRZero") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘MRZero-Ex.R’ failed
The error most likely occurred in:
Name: mr_plot
Title: Draw a scatter plot of the genetic associations and/or causal
estimates
Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method
mr_plot,MRMVInput-method
** Examples
mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse),
+ line="egger", orientate = TRUE)
Error in pm[[2]] : subscript out of bounds
Calls: mr_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
mshap
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/mshap
- Date/Publication: 2021-06-17 08:40:02 UTC
- Number of recursive dependencies: 123
Run revdepcheck::cloud_details(, "mshap") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mshap)
>
> test_check("mshap")
[ FAIL 8 | WARN 2 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
p2_all has type 'object', not 'list'.
── Failure ('test-plots.R:62:3'): Observation Plot Works with all arguments ────
class(p2_all) (actual) not equal to c("gg", "ggplot") (expected).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 8 | WARN 2 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘tidyselect’
All declared Imports should be used.
mtdesign
- Version: 0.1.2
- GitHub: https://github.com/openpharma/mtdesign
- Source code: https://github.com/cran/mtdesign
- Date/Publication: 2024-11-05 14:10:15 UTC
- Number of recursive dependencies: 56
Run revdepcheck::cloud_details(, "mtdesign") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mtdesign)
>
> test_check("mtdesign")
testthat 2025-06-11 09:02:22 DEBUG test_check: Entry
testthat 2025-06-11 09:02:22 DEBUG test_check: Entry
testthat 2025-06-11 09:02:22 DEBUG test_check: Exit
...expected[2:2]: "ggplot"
── Failure ('test-powerPlot.R:6:3'): multiplication works ──────────────────────
class(powerPlot(simonGrid)) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 127 ]
Error: Test failures
Execution halted
```
MultiTraits
- Version: 0.5.0
- GitHub: NA
- Source code: https://github.com/cran/MultiTraits
- Date/Publication: 2025-04-20 18:40:02 UTC
- Number of recursive dependencies: 137
Run revdepcheck::cloud_details(, "MultiTraits") for more info
Newly broken
- checking whether package ‘MultiTraits’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘MultiTraits’ ...
** package ‘MultiTraits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: <ggplot2::element_line> object properties are invalid:
- @lineend must be <character> or <NULL>, not S3<arrow>
Execution halted
ERROR: lazy loading failed for package ‘MultiTraits’
* removing ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/MultiTraits’
CRAN
* installing *source* package ‘MultiTraits’ ...
** package ‘MultiTraits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MultiTraits)
mvdalab
- Version: 1.7
- GitHub: NA
- Source code: https://github.com/cran/mvdalab
- Date/Publication: 2022-10-05 23:00:14 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "mvdalab") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘mvdalab-Ex.R’ failed
The error most likely occurred in:
Name: plot.plusminus
Title: 2D Graph of the PCA scores associated with a plusminusFit
Aliases: plot.plusminus
** Examples
PLUS-Minus CLASSIFIER WITH validation = 'none', i.e. no CV
...
15. │ └─ggplot2 (local) FUN(X[[i]], ...)
16. │ └─scale$map_df(df = df)
17. │ └─ggplot2 (local) map_df(..., self = self)
18. │ └─base::lapply(aesthetics, function(j) self$map(df[[j]]))
19. │ └─ggplot2 (local) FUN(X[[i]], ...)
20. │ └─self$map(df[[j]])
21. │ └─ggplot2 (local) map(..., self = self)
22. │ └─vctrs::vec_slice<-(*tmp*, is.na(x), value = na_value)
23. └─rlang::cnd_signal(x)
Execution halted
```
mverse
- Version: 0.2.0
- GitHub: https://github.com/mverseanalysis/mverse
- Source code: https://github.com/cran/mverse
- Date/Publication: 2025-04-24 08:10:02 UTC
- Number of recursive dependencies: 135
Run revdepcheck::cloud_details(, "mverse") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘mverse_gettingstarted.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 9.0Mb
sub-directories of 1Mb or more:
data 7.0Mb
mxnorm
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/mxnorm
- Date/Publication: 2023-05-01 17:10:02 UTC
- Number of recursive dependencies: 169
Run revdepcheck::cloud_details(, "mxnorm") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mxnorm)
>
> test_check("mxnorm")
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
...expected[2:2]: "ggplot"
── Failure ('test-plot_mx_umap.R:16:5'): plotting works ────────────────────────
class(plot_mx_umap(mx_data)) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 2 | WARN 2 | SKIP 6 | PASS 85 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘e1071’ ‘glue’
All declared Imports should be used.
neatmaps
- Version: 2.1.0
- GitHub: https://github.com/PhilBoileau/neatmaps
- Source code: https://github.com/cran/neatmaps
- Date/Publication: 2019-05-12 19:10:03 UTC
- Number of recursive dependencies: 97
Run revdepcheck::cloud_details(, "neatmaps") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘neatmaps-Ex.R’ failed
The error most likely occurred in:
Name: consClustResTable
Title: Consensus Cluster Results in a Table
Aliases: consClustResTable
** Examples
create the data frame using the network, node and edge attributes
...
run the neatmap code on df
neat_res <- neatmap(df, scale_df = "ecdf", max_k = 3, reps = 100,
+ xlab = "vars", ylab = "nets", xlab_cex = 1, ylab_cex = 1)
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the dendextend package.
Please report the issue at https://github.com/talgalili/dendextend/issues.
Error in pm[[2]] : subscript out of bounds
Calls: neatmap ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 6.3Mb
NHSRplotthedots
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/NHSRplotthedots
- Date/Publication: 2021-11-03 20:20:10 UTC
- Number of recursive dependencies: 82
Run revdepcheck::cloud_details(, "NHSRplotthedots") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NHSRplotthedots)
>
> test_check("NHSRplotthedots")
[ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ]
...
attr(expected, 'S7_class') is absent
── Failure ('test-ptd_create_ggplot.R:79:3'): it returns a ggplot object ───────
p$labels (actual) not equal to list(...) (expected).
actual is an S7 object of class
expected is a list
[ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘NHSRdatasets’ ‘grid’ ‘utils’
All declared Imports should be used.
nichetools
- Version: 0.3.2
- GitHub: https://github.com/benjaminhlina/nichetools
- Source code: https://github.com/cran/nichetools
- Date/Publication: 2024-09-30 21:20:02 UTC
- Number of recursive dependencies: 117
Run revdepcheck::cloud_details(, "nichetools") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘using-nichetools-with-the-package-SIBER.Rmd’ using rmarkdown
Quitting from using-nichetools-with-the-package-SIBER.Rmd:96-118 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! object must be an , not a S3
Backtrace:
...
61. └─ggplot2 (local) f(init, x[[i]])
62. └─S7::props(e2)
63. └─S7::check_is_S7(object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using-nichetools-with-the-package-SIBER.Rmd' failed with diagnostics:
object must be an , not a S3
--- failed re-building ‘using-nichetools-with-the-package-SIBER.Rmd’
--- re-building ‘using-nichetools-with-the-package-nicheROVER.Rmd’ using rmarkdown
```
NiLeDAM
- Version: 0.3
- GitHub: NA
- Source code: https://github.com/cran/NiLeDAM
- Date/Publication: 2023-09-18 06:00:02 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "NiLeDAM") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NiLeDAM)
Welcome to the NiLeDAM package
...
expected[2:2]: "ggplot"
── Failure ('test-popline.R:22:3'): test result on 'ageTests' plotted correctly ──
typeof(p) (actual) not equal to "list" (expected).
actual: "object"
expected: "list"
[ FAIL 8 | WARN 10 | SKIP 0 | PASS 49 ]
Error: Test failures
Execution halted
```
NIMAA
- Version: 0.2.1
- GitHub: https://github.com/jafarilab/NIMAA
- Source code: https://github.com/cran/NIMAA
- Date/Publication: 2022-04-11 14:12:45 UTC
- Number of recursive dependencies: 179
Run revdepcheck::cloud_details(, "NIMAA") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘NIMAA-Ex.R’ failed
The error most likely occurred in:
Name: extractSubMatrix
Title: Extract the non-missing submatrices from a given matrix.
Aliases: extractSubMatrix
** Examples
load part of the beatAML data
...
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the NIMAA package.
Please report the issue at https://github.com/jafarilab/NIMAA/issues.
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the NIMAA package.
Please report the issue at https://github.com/jafarilab/NIMAA/issues.
Error in pm[[2]] : subscript out of bounds
Calls: extractSubMatrix ... plotSubmatrix -> print -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NIMAA)
>
> test_check("NIMAA")
binmatnest.temperature
13.21346
Size of Square: 66 rows x 66 columns
...
- └─NIMAA::extractSubMatrix(...) at test-extract-nonmissing-submatrix.R:5:3
- └─NIMAA:::plotSubmatrix(...)
- ├─base::print(plotly::ggplotly(p))
- ├─plotly::ggplotly(p)
- └─plotly:::ggplotly.ggplot(p)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 7 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘NIMAA-vignette.Rmd’ using rmarkdown
Quitting from NIMAA-vignette.Rmd:48-57 [plotIncMatrix function]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
Backtrace:
...
Error: processing vignette 'NIMAA-vignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘NIMAA-vignette.Rmd’
SUMMARY: processing the following file failed:
‘NIMAA-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 6.5Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 4.0Mb
-
checking data for non-ASCII characters ... NOTE
Note: found 24 marked UTF-8 strings
nlmixr2plot
- Version: 3.0.1
- GitHub: https://github.com/nlmixr2/nlmixr2plot
- Source code: https://github.com/cran/nlmixr2plot
- Date/Publication: 2025-02-14 15:10:02 UTC
- Number of recursive dependencies: 159
Run revdepcheck::cloud_details(, "nlmixr2plot") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlmixr2plot)
>
> test_check("nlmixr2plot")
> loading into symengine environment...
> pruning branches (if/else) of saem model...
v done
...expected`: TRUE
── Failure ('test-add.R:45:3'): test addition operator ─────────────────────────
inherits(p2[[1]], "gg") is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 2 | WARN 4 | SKIP 2 | PASS 33 ]
Error: Test failures
Execution halted
```
nonmem2R
- Version: 0.2.5
- GitHub: NA
- Source code: https://github.com/cran/nonmem2R
- Date/Publication: 2024-03-11 17:30:02 UTC
- Number of recursive dependencies: 61
Run revdepcheck::cloud_details(, "nonmem2R") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘nonmem2R-Ex.R’ failed
The error most likely occurred in:
Name: basic.GOF4
Title: Basic 4- and 6-panel GOF
Aliases: basic.GOF4 basic.GOF6
** Examples
Get path to the example files included in nonmem2R package
...
22. │ └─l$compute_position(d, layout)
23. │ └─ggplot2 (local) compute_position(..., self = self)
24. │ └─self$position$setup_data(data, params)
25. │ └─ggplot2 (local) setup_data(..., self = self)
26. └─base::.handleSimpleError(...)
27. └─rlang (local) h(simpleError(msg, call))
28. └─handlers[1L]
29. └─cli::cli_abort(...)
30. └─rlang::abort(...)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘GOFvignette.Rmd’ using rmarkdown
normfluodbf
- Version: 2.0.0
- GitHub: https://github.com/AlphaPrime7/normfluodbf
- Source code: https://github.com/cran/normfluodbf
- Date/Publication: 2024-09-27 23:10:03 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "normfluodbf") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
▆
- ├─... %>% ... at test_plot_dev.R:13:3
- └─normfluodbf:::plot_dev_with_custom_legends(...)
- ├─plotly::ggplotly(p)
- └─plotly:::ggplotly.ggplot(p)
- └─plotly::gg2list(...)
[ FAIL 4 | WARN 613 | SKIP 0 | PASS 15 ]
Error: Test failures
Execution halted
```
nzelect
- Version: 0.4.0
- GitHub: NA
- Source code: https://github.com/cran/nzelect
- Date/Publication: 2017-10-02 20:35:23 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "nzelect") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘README.Rmd’ using rmarkdown
In both
-
checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 5.0Mb
-
checking data for non-ASCII characters ... NOTE
Note: found 6409 marked UTF-8 strings
occCite
- Version: 0.5.9
- GitHub: https://github.com/ropensci/occCite
- Source code: https://github.com/cran/occCite
- Date/Publication: 2024-10-28 13:30:06 UTC
- Number of recursive dependencies: 131
Run revdepcheck::cloud_details(, "occCite") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
...
── Failure ('test-sumFig.R:40:3'): sumFig works when plotting only source by species ──
class(test[[1]][[1]]) not equal to "ggplot_built".
Lengths differ: 4 is not 1
── Failure ('test-sumFig.R:48:3'): sumFig works when plotting only aggregator by species ──
class(test[[1]][[1]]) not equal to "ggplot_built".
Lengths differ: 4 is not 1
[ FAIL 9 | WARN 1 | SKIP 20 | PASS 114 ]
Error: Test failures
Execution halted
```
In both
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ape’
All declared Imports should be used.
-
checking data for non-ASCII characters ... NOTE
Note: found 7 marked UTF-8 strings
ofpetrial
- Version: 0.1.2
- GitHub: https://github.com/DIFM-Brain/ofpetrial
- Source code: https://github.com/cran/ofpetrial
- Date/Publication: 2024-12-11 23:00:02 UTC
- Number of recursive dependencies: 147
Run revdepcheck::cloud_details(, "ofpetrial") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ofpetrial-Ex.R’ failed
The error most likely occurred in:
Name: check_ortho_with_chars
Title: Check the orthogonality with field/topographic characteristics
Aliases: check_ortho_with_chars
** Examples
data(td_single_input)
...
30. └─plt$build()
31. └─private$addLimits(margThemed)
32. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish)
33. └─ggplot2::continuous_scale(...)
34. └─ggplot2:::check_continuous_limits(limits, call = call)
35. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE)
36. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
37. └─ggplot2:::stop_input_type(...)
38. └─rlang::abort(message, ..., call = call, arg = arg)
Execution halted
```
ogrdbstats
- Version: 0.5.2
- GitHub: https://github.com/airr-community/ogrdbstats
- Source code: https://github.com/cran/ogrdbstats
- Date/Publication: 2024-11-03 06:10:02 UTC
- Number of recursive dependencies: 130
Run revdepcheck::cloud_details(, "ogrdbstats") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ogrdbstats-Ex.R’ failed
The error most likely occurred in:
Name: make_novel_base_grobs
Title: Create plots showing base usage at selected locations in
sequences based on novel alleles
Aliases: make_novel_base_grobs
** Examples
base_grobs = make_novel_base_grobs(
+ example_rep$inferred_seqs,
+ example_rep$input_sequences,
+ 'V',
+ FALSE
+ )
Error: object is invalid:
- every label must be named.
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Using_ogrdbstats.Rmd’ using rmarkdown
Quitting from Using_ogrdbstats.Rmd:277-296 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! object is invalid:
- every label must be named.
...
Error: processing vignette 'Using_ogrdbstats.Rmd' failed with diagnostics:
object is invalid:
- every label must be named.
--- failed re-building ‘Using_ogrdbstats.Rmd’
SUMMARY: processing the following file failed:
‘Using_ogrdbstats.Rmd’
Error: Vignette re-building failed.
Execution halted
```
OmicNavigator
- Version: 1.15.0
- GitHub: https://github.com/abbvie-external/OmicNavigator
- Source code: https://github.com/cran/OmicNavigator
- Date/Publication: 2025-05-28 19:40:02 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "OmicNavigator") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> # Test files in inst/tinytest/
> if (requireNamespace("tinytest", quietly = TRUE)) {
- suppressMessages(tinytest::test_package("OmicNavigator"))
- }
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
...
testPlot.R.................... 140 tests [0;31m1 fails[0m
testPlot.R.................... 140 tests [0;31m1 fails[0m
testPlot.R.................... 141 tests [0;31m1 fails[0m
testPlot.R.................... 141 tests [0;31m1 fails[0m
testPlot.R.................... 141 tests [0;31m1 fails[0m
testPlot.R.................... 142 tests [0;31m1 fails[0m
testPlot.R.................... 142 tests [0;31m1 fails[0m
testPlot.R.................... 143 tests [0;31m1 fails[0m Error in pm[[2]] : subscript out of bounds
Calls: suppressMessages ... plotStudy -> f -> -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
-
checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
--- re-building ‘OmicNavigatorAPI.Rnw’ using Sweave
OmicNavigator R package version: 1.15.0
The app is not installed. Install it with installApp()
Installing study "ABC" in /tmp/RtmppgkVeU/file1ce750eab033
Exporting study "ABC" as an R package
Note: No maintainer email was specified. Using the placeholder: Unknown unknown@unknown
Calculating pairwise overlaps. This may take a while...
Exported study to /tmp/RtmppgkVeU/ONstudyABC
Success!
...
l.14 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘OmicNavigatorUsersGuide.Rnw’
SUMMARY: processing the following files failed:
‘OmicNavigatorAPI.Rnw’ ‘OmicNavigatorUsersGuide.Rnw’
Error: Vignette re-building failed.
Execution halted
```
ordinalsimr
- Version: 0.2.1
- GitHub: https://github.com/NeuroShepherd/ordinalsimr
- Source code: https://github.com/cran/ordinalsimr
- Date/Publication: 2025-06-04 07:10:02 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "ordinalsimr") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
── Error ('test-utils.R:70:3'): test the plot_power() function ─────────────────
Error inexpect_match(plot_obj$labels$ymin, "lower_power_bound")`: is.character(act$val) is not TRUE
Backtrace:
▆
- └─testthat::expect_match(plot_obj$labels$ymin, "lower_power_bound") at test-utils.R:70:3
- └─base::stopifnot(is.character(act$val))
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 69 ]
Error: Test failures
Execution halted
```
ordr
- Version: 0.1.1
- GitHub: https://github.com/corybrunson/ordr
- Source code: https://github.com/cran/ordr
- Date/Publication: 2022-10-20 20:52:35 UTC
- Number of recursive dependencies: 106
Run revdepcheck::cloud_details(, "ordr") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘ordr-Ex.R’ failed
The error most likely occurred in:
Name: biplot-stats
Title: Convenience stats for row and column matrix factors
Aliases: biplot-stats stat_rows_ellipse stat_cols_ellipse
stat_rows_center stat_cols_center stat_rows_star stat_cols_star
stat_rows_chull stat_cols_chull stat_rows_cone stat_cols_cone
stat_rows_scale stat_cols_scale stat_rows_spantree stat_cols_spantree
...
+ type = "qual", palette = 2,
+ aesthetics = c("color", "fill")
+ ) +
+ ggtitle(
+ "Row-principal PCA biplot of Anderson iris measurements",
+ "Overlaid with 95% confidence disks"
+ )
Error: object properties are invalid:
- @mapping must be , not
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ordr)
Loading required package: ggplot2
>
> test_check("ordr")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 181 ]
...
▆
1. └─ordr::ggbiplot(m) at test-stat-spantree.r:10:5
2. ├─base::$<-(*tmp*, "mapping", value = <named list>)
3. └─ggplot2:::$<-.ggplot2::gg(*tmp*, "mapping", value = <named list>)
4. └─S7::props<-(*tmp*, value = [[<-(S7::props(x), i, value))
5. └─S7::validate(object)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 181 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘cmds-variables.rmd’ using rmarkdown
In both
-
checking Rd files ... NOTE
checkRd: (-1) lra-ord.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lra-ord.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lra-ord.Rd:57-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lra-ord.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lra-ord.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
-
checking data for non-ASCII characters ... NOTE
Note: found 4 marked UTF-8 strings
pacu
- Version: 0.1.63
- GitHub: https://github.com/cldossantos/pacu
- Source code: https://github.com/cran/pacu
- Date/Publication: 2025-05-29 21:50:02 UTC
- Number of recursive dependencies: 168
Run revdepcheck::cloud_details(, "pacu") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘pacu.Rmd’ using rmarkdown
--- finished re-building ‘pacu.Rmd’
--- re-building ‘pacu_faq.Rmd’ using rmarkdown
--- finished re-building ‘pacu_faq.Rmd’
--- re-building ‘pacu_sat.Rmd’ using rmarkdown
```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
extdata 4.8Mb
pafr
- Version: 0.0.2
- GitHub: https://github.com/dwinter/pafr
- Source code: https://github.com/cran/pafr
- Date/Publication: 2020-12-08 10:20:12 UTC
- Number of recursive dependencies: 110
Run revdepcheck::cloud_details(, "pafr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pafr)
Loading required package: ggplot2
>
> test_check("pafr")
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 70 ]
...
── Failure ('test_plot.r:11:5'): dotplot works produces a plot ─────────────────
unname(labs["xintercept"]) not equal to "xintercept".
target is NULL, current is character
── Failure ('test_plot.r:12:5'): dotplot works produces a plot ─────────────────
unname(labs["yintercept"]) not equal to "yintercept".
target is NULL, current is character
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 70 ]
Error: Test failures
Execution halted
```
-
checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.dotplot_hl:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
palettes
- Version: 0.2.1
- GitHub: https://github.com/mccarthy-m-g/palettes
- Source code: https://github.com/cran/palettes
- Date/Publication: 2024-07-13 23:10:01 UTC
- Number of recursive dependencies: 111
Run revdepcheck::cloud_details(, "palettes") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘palettes-Ex.R’ failed
The error most likely occurred in:
Name: scale_colour_palette_d
Title: Colour scales from colour vectors and colour palettes
Aliases: scale_colour_palette_d scale_fill_palette_d
scale_colour_palette_c scale_fill_palette_c scale_colour_palette_b
scale_fill_palette_b scale_color_palette_d scale_color_palette_c
scale_color_palette_b
...
26. └─vctrs::vec_default_cast(...)
27. ├─base::withRestarts(...)
28. │ └─base (local) withOneRestart(expr, restarts[[1L]])
29. │ └─base (local) doWithOneRestart(return(expr), restart)
30. └─vctrs::stop_incompatible_cast(...)
31. └─vctrs::stop_incompatible_type(...)
32. └─vctrs:::stop_incompatible(...)
33. └─vctrs:::stop_vctrs(...)
34. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘biscale.Rmd’ using rmarkdown
paramix
- Version: 0.0.2
- GitHub: NA
- Source code: https://github.com/cran/paramix
- Date/Publication: 2025-06-10 14:50:02 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "paramix") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown
patchwork
- Version: 1.3.0
- GitHub: https://github.com/thomasp85/patchwork
- Source code: https://github.com/cran/patchwork
- Date/Publication: 2024-09-16 09:30:02 UTC
- Number of recursive dependencies: 92
Run revdepcheck::cloud_details(, "patchwork") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘patchwork-Ex.R’ failed
The error most likely occurred in:
Name: plot_arithmetic
Title: Plot arithmetic
Aliases: plot_arithmetic -.ggplot /.ggplot |.ggplot *.gg &.gg
** Examples
library(ggplot2)
...
Stacking and packing
(p1 | p2 | p3) /
+ p4
Add elements to the same nesting level
(p1 + (p2 + p3) + p4 + plot_layout(ncol = 1)) * theme_bw()
Error: Can't find method for generic *(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(patchwork)
>
> test_check("patchwork")
[ FAIL 1 | WARN 1 | SKIP 11 | PASS 0 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
...
• layout/insets-can-be-changed.svg
• layout/other-alignments-work.svg
• layout/patchworks-can-be-inset.svg
• layout/setting-heights-as-units.svg
• layout/setting-heights.svg
• layout/setting-nrow.svg
• layout/setting-widths-as-units.svg
• layout/setting-widths.svg
Error: Test failures
Execution halted
```
-
checking S3 generic/method consistency ... WARNING
```
ggplot_gtable:
function(plot)
ggplot_gtable.fixed_dim_build:
function(data)
ggplot_add:
function(object, plot, ...)
ggplot_add.formula:
function(object, plot, object_name)
...
function(object, plot, ...)
ggplot_add.grob:
function(object, plot, object_name)
ggplot_build:
function(plot, ...)
ggplot_build.fixed_dim_ggplot:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
pathfindR
- Version: 2.4.2
- GitHub: https://github.com/egeulgen/pathfindR
- Source code: https://github.com/cran/pathfindR
- Date/Publication: 2025-02-17 09:30:02 UTC
- Number of recursive dependencies: 142
Run revdepcheck::cloud_details(, "pathfindR") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat-active_snw.R’
Running ‘testthat-clustering.R’
Running ‘testthat-comparison.R’
Running ‘testthat-core.R’
Running ‘testthat-data_generation.R’
Running ‘testthat-enrichment.R’
Running ‘testthat-scoring.R’
Running the tests in ‘tests/testthat-scoring.R’ failed.
Complete output:
> library(testthat)
...
── Failure ('test-scoring.R:113:9'):plot_scores()-- creates term score heatmap ggplot object with correct labels ──
g$labels$x not identical to "Sample".
target is NULL, current is character
── Failure ('test-scoring.R:114:9'):plot_scores()` -- creates term score heatmap ggplot object with correct labels ──
g$labels$y not identical to "Term".
target is NULL, current is character
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 37 ]
Error: Test failures
Execution halted
```
pathviewr
- Version: 1.1.7
- GitHub: https://github.com/ropensci/pathviewr
- Source code: https://github.com/cran/pathviewr
- Date/Publication: 2023-03-08 08:10:05 UTC
- Number of recursive dependencies: 188
Run revdepcheck::cloud_details(, "pathviewr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pathviewr)
> #library(vdiffr)
>
> test_check("pathviewr")
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ]
...
── Error ('test-plot_by_subject.R:168:3'): elev views wrangled correctly via tidyverse ──
Error in expect_match(elev_all_plots[[3]][[4]][["labels"]][["x"]], "position_height"): is.character(act$val) is not TRUE
Backtrace:
▆
1. └─testthat::expect_match(...) at test-plot_by_subject.R:168:3
2. └─base::stopifnot(is.character(act$val))
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ]
Error: Test failures
Execution halted
```
PatientLevelPrediction
- Version: 6.4.1
- GitHub: https://github.com/OHDSI/PatientLevelPrediction
- Source code: https://github.com/cran/PatientLevelPrediction
- Date/Publication: 2025-04-20 09:40:02 UTC
- Number of recursive dependencies: 215
Run revdepcheck::cloud_details(, "PatientLevelPrediction") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘PatientLevelPrediction-Ex.R’ failed
The error most likely occurred in:
Name: outcomeSurvivalPlot
Title: Plot the outcome incidence over time
Aliases: outcomeSurvivalPlot
** Examples
Don't show:
...
Warning: Ignoring unknown labels:
• fill : "Strata"
• linetype : "1"
Warning: Ignoring unknown labels:
• fill : "Strata"
• linetype : "1"
Warning: Ignoring unknown labels:
• colour : "Strata"
Error: object must be an , not a S3
Execution halted
```
patientProfilesVis
- Version: 2.0.9
- GitHub: https://github.com/openanalytics/patientProfilesVis
- Source code: https://github.com/cran/patientProfilesVis
- Date/Publication: 2024-06-18 09:00:02 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "patientProfilesVis") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘patientProfiles-template-SDTM.Rmd’ using rmarkdown
--- finished re-building ‘patientProfiles-template-SDTM.Rmd’
--- re-building ‘patientProfilesVis-introduction.Rmd’ using rmarkdown
Quitting from patientProfilesVis-introduction.Rmd:167-171 [text-wideFormat-include]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
...
Error: processing vignette 'patientProfilesVis-introduction.Rmd' failed with diagnostics:
The plot.margin theme element must be a vector of length 4
--- failed re-building ‘patientProfilesVis-introduction.Rmd’
SUMMARY: processing the following file failed:
‘patientProfilesVis-introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(patientProfilesVis)
>
> test_check("patientProfilesVis")
[ FAIL 21 | WARN 23 | SKIP 20 | PASS 330 ]
== Skipped tests (20) ==================================================================================================================================================================================
...
24. -ggplot2:::plot_theme(plot)
25. -ggplot2:::check_theme(theme)
26. -base::mapply(...)
27. -ggplot2 (local) <fn>(...)
28. -cli::cli_abort(...)
29. -rlang::abort(...)
[ FAIL 21 | WARN 23 | SKIP 20 | PASS 330 ]
Error: Test failures
Execution halted
```
-
checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 5.2Mb
pcr
- Version: 1.2.2
- GitHub: https://github.com/MahShaaban/pcr
- Source code: https://github.com/cran/pcr
- Date/Publication: 2020-04-01 06:10:02 UTC
- Number of recursive dependencies: 68
Run revdepcheck::cloud_details(, "pcr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pcr)
>
> test_check("pcr")
[ FAIL 12 | WARN 1 | SKIP 0 | PASS 74 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('test_plotting_fun.R:68:3'): .pcr_plot_assess returns an efficiency plot ──
class(gg) not identical to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test_plotting_fun.R:79:3'): .pcr_plot_assess returns standard_curve plots ──
class(gg) not identical to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 12 | WARN 1 | SKIP 0 | PASS 74 ]
Error: Test failures
Execution halted
```
pdxTrees
- Version: 0.4.0
- GitHub: https://github.com/mcconvil/pdxTrees
- Source code: https://github.com/cran/pdxTrees
- Date/Publication: 2020-08-17 14:00:02 UTC
- Number of recursive dependencies: 102
Run revdepcheck::cloud_details(, "pdxTrees") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘pdxTrees-vignette.Rmd’ using rmarkdown
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
pedbp
- Version: 2.0.2
- GitHub: https://github.com/dewittpe/pedbp
- Source code: https://github.com/cran/pedbp
- Date/Publication: 2025-01-07 20:40:01 UTC
- Number of recursive dependencies: 116
Run revdepcheck::cloud_details(, "pedbp") for more info
Newly broken
- checking tests ... ERROR
Running ‘test-bmi_for_age.R’
Running ‘test-bp-by-source.R’
Running ‘test-bp_cdf.R’
Running the tests in ‘tests/test-bp_cdf.R’ failed.
Complete output:
> library(pedbp)
>
> ################################################################################
> x <- bp_cdf(age = 96, male = 1, sbp = 103, dbp = 55)
> stopifnot(identical(class(x), c("gg", "ggplot")))
Error: identical(class(x), c("gg", "ggplot")) is not TRUE
Execution halted
In both
- checking installed package size ... NOTE
installed size is 7.1Mb
sub-directories of 1Mb or more:
libs 5.3Mb
personalized
- Version: 0.2.7
- GitHub: https://github.com/jaredhuling/personalized
- Source code: https://github.com/cran/personalized
- Date/Publication: 2022-06-27 20:20:03 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "personalized") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> library(personalized)
Loading required package: glmnet
Loading required package: Matrix
Loaded glmnet 4.1-9
Loading required package: mgcv
...
- └─personalized:::plot.subgroup_validated(subgrp.val, type = "stability")
- ├─plotly::subplot(...)
- │ └─plotly:::dots2plots(...)
- ├─plotly::ggplotly(p.primary, tooltip = paste0("tooltip", 1:4))
- └─plotly:::ggplotly.ggplot(...)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 215 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) fit.subgroup.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:65: Lost braces in \itemize; meant \describe ?
...
checkRd: (-1) fit.subgroup.Rd:179-181: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:182: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:183: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.subgroup.Rd:184: Lost braces in \itemize; meant \describe ?
checkRd: (-1) validate.subgroup.Rd:77-81: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) validate.subgroup.Rd:82-86: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) validate.subgroup.Rd:89-92: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) weighted.ksvm.Rd:21: Lost braces; missing escapes or markup?
21 | \item{y}{The response vector (either a character vector, factor vector, or numeric vector with values in {-1, 1})}
| ^
phylepic
- Version: 0.2.0
- GitHub: https://github.com/cidm-ph/phylepic
- Source code: https://github.com/cran/phylepic
- Date/Publication: 2024-05-31 19:10:02 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "phylepic") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING
```
ggplot_gtable:
function(plot)
ggplot_gtable.phylepic_ggplot_build:
function(data)
ggplot_build:
function(plot, ...)
ggplot_build.phylepic_ggplot:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
PieGlyph
- Version: 1.0.0
- GitHub: https://github.com/rishvish/PieGlyph
- Source code: https://github.com/cran/PieGlyph
- Date/Publication: 2024-06-28 12:00:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "PieGlyph") for more info
Newly broken
- checking whether package ‘PieGlyph’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘PieGlyph’ ...
** package ‘PieGlyph’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'is.waive' not found
Error: unable to load R code in package ‘PieGlyph’
Execution halted
ERROR: lazy loading failed for package ‘PieGlyph’
* removing ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/PieGlyph’
CRAN
* installing *source* package ‘PieGlyph’ ...
** package ‘PieGlyph’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PieGlyph)
plantTracker
- Version: 1.1.0
- GitHub: https://github.com/aestears/plantTracker
- Source code: https://github.com/cran/plantTracker
- Date/Publication: 2023-05-05 18:20:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "plantTracker") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘Suggested_plantTracker_Workflow.Rmd’ using rmarkdown
Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], :
number of items to replace is not a multiple of replacement length
Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], :
number of items to replace is not a multiple of replacement length
Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], :
number of items to replace is not a multiple of replacement length
Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], :
number of items to replace is not a multiple of replacement length
Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], :
number of items to replace is not a multiple of replacement length
Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], :
number of items to replace is not a multiple of replacement length
Plasmidprofiler
- Version: 0.1.6
- GitHub: NA
- Source code: https://github.com/cran/Plasmidprofiler
- Date/Publication: 2017-01-06 01:10:47
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "Plasmidprofiler") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘Plasmidprofiler-Ex.R’ failed
The error most likely occurred in:
Name: main
Title: Main: Run everything
Aliases: main
** Examples
main(blastdata,
...
Saving 12 x 7 in image
Warning: Vectorized input to element_text() is not officially supported.
ℹ Results may be unexpected or may change in future versions of ggplot2.
Warning in geom_tile(aes(x = Plasmid, y = Sample, label = AMR_gene, fill = Inc_group, :
Ignoring unknown aesthetics: label and text
Warning: Use of report$Sureness is discouraged.
ℹ Use Sureness instead.
Error in pm[[2]] : subscript out of bounds
Calls: main ... -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
plotdap
- Version: 1.0.3
- GitHub: https://github.com/rmendels/plotdap
- Source code: https://github.com/cran/plotdap
- Date/Publication: 2023-10-17 22:00:15 UTC
- Number of recursive dependencies: 109
Run revdepcheck::cloud_details(, "plotdap") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘plotdap-Ex.R’ failed
The error most likely occurred in:
Name: add_ggplot
Title: Add ggplot2 elements to a plotdap object
Aliases: add_ggplot
** Examples
...
+ crs = "+proj=laea +y_0=0 +lon_0=155 +lat_0=-90 +ellps=WGS84 +no_defs")
Loading required package: maps
p <- add_ggplot(
+ p,
+ ggplot2::theme_bw()
+ )
Error in .Primitive("@")(NULL, properties) :
no applicable method for @ applied to an object of class "NULL"
Calls: add_ggplot ... -> validate -> validate_properties -> @ -> do.call
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘using_plotdap.Rmd’ using rmarkdown
Quitting from using_plotdap.Rmd:57-61 [world]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! no applicable method for @ applied to an object of class "NULL"
Backtrace:
...
Error: processing vignette 'using_plotdap.Rmd' failed with diagnostics:
no applicable method for @ applied to an object of class "NULL"
--- failed re-building ‘using_plotdap.Rmd’
SUMMARY: processing the following file failed:
‘using_plotdap.Rmd’
Error: Vignette re-building failed.
Execution halted
```
plotDK
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/plotDK
- Date/Publication: 2021-10-01 08:00:02 UTC
- Number of recursive dependencies: 82
Run revdepcheck::cloud_details(, "plotDK") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(plotDK)
>
> test_check("plotDK")
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 46 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('test-plotDK.R:72:5'): The returned plot has the correct labels ────
labels$fill not equal to "test_label".
target is NULL, current is character
── Failure ('test-plotDK.R:81:5'): The returned plot has the correct labels ────
labels$fill not equal to "fill".
target is NULL, current is character
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 46 ]
Error: Test failures
Execution halted
```
In both
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘mapproj’
All declared Imports should be used.
-
checking data for non-ASCII characters ... NOTE
Note: found 12992 marked UTF-8 strings
PlotFTIR
- Version: 1.2.0
- GitHub: https://github.com/NRCan/PlotFTIR
- Source code: https://github.com/cran/PlotFTIR
- Date/Publication: 2025-03-31 15:30:06 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "PlotFTIR") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...expectedis a character vector ('Transmittance (a.u.)')
── Failure ('test-plot_ftir.R:28:3'): Plots are generated ──────────────────────
p5$label$y (actual) not equal to "Normalized Absorbance" (expected`).
actual is NULL
expected is a character vector ('Normalized Absorbance')
[ FAIL 6 | WARN 58 | SKIP 0 | PASS 513 ]
Error: Test failures
Execution halted
```
plotly
- Version: 4.10.4
- GitHub: https://github.com/plotly/plotly.R
- Source code: https://github.com/cran/plotly
- Date/Publication: 2024-01-13 22:40:02 UTC
- Number of recursive dependencies: 134
Run revdepcheck::cloud_details(, "plotly") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘plotly-Ex.R’ failed
The error most likely occurred in:
Name: style
Title: Modify trace(s)
Aliases: style
** Examples
Don't show:
...
+ # this clobbers the previously supplied marker.line.color
+ style(p, marker.line = list(width = 2.5), marker.size = 10)
+ ## Don't show:
+ }) # examplesIf
(p <- ggplotly(qplot(data = mtcars, wt, mpg, geom = c("point", "smooth"))))
Warning: qplot() was deprecated in ggplot2 3.4.0.
geom_smooth() using method = 'loess' and formula = 'y ~ x'
Error in pm[[2]] : subscript out of bounds
Calls: ... eval -> eval -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("plotly")
Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
...
• plotly-subplot/subplot-bump-axis-annotation.svg
• plotly-subplot/subplot-bump-axis-image.svg
• plotly-subplot/subplot-bump-axis-shape-shared.svg
• plotly-subplot/subplot-bump-axis-shape.svg
• plotly-subplot/subplot-reposition-annotation.svg
• plotly-subplot/subplot-reposition-image.svg
• plotly-subplot/subplot-reposition-shape-fixed.svg
• plotly-subplot/subplot-reposition-shape.svg
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 7.1Mb
sub-directories of 1Mb or more:
R 1.0Mb
htmlwidgets 4.0Mb
plotor
- Version: 0.6.0
- GitHub: https://github.com/craig-parylo/plotor
- Source code: https://github.com/cran/plotor
- Date/Publication: 2025-05-28 11:50:02 UTC
- Number of recursive dependencies: 139
Run revdepcheck::cloud_details(, "plotor") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘plotor-Ex.R’ failed
The error most likely occurred in:
Name: table_or
Title: Table OR
Aliases: table_or
** Examples
get some data
...
40. │ └─self$draw_panel(...)
41. │ └─ggplot2 (local) draw_panel(..., self = self)
42. │ └─grid:::Ops.unit(data$linewidth, 0)
43. │ └─base::stop(...)
44. └─base::.handleSimpleError(...)
45. └─rlang (local) h(simpleError(msg, call))
46. └─handlers[1L]
47. └─cli::cli_abort(...)
48. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
── Failure ('test-plot_or.R:7:3'):plot_or()does not produce messages or warnings ──{ ... }produced warnings.
── Failure ('test-plot_or.R:13:3'):plot_or()does not produce messages or warnings ──{ ... }` produced warnings.
[ FAIL 2 | WARN 24 | SKIP 1 | PASS 26 ]
Deleting unused snapshots:
• plot_or/plot-diabetes.svg
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘using_plotor.Rmd’ using rmarkdown
plotROC
- Version: 2.3.1
- GitHub: https://github.com/sachsmc/plotROC
- Source code: https://github.com/cran/plotROC
- Date/Publication: 2023-10-06 12:40:02 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "plotROC") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘plotROC-Ex.R’ failed
The error most likely occurred in:
Name: calc_auc
Title: Calculate the Area under the ROC curve
Aliases: calc_auc
** Examples
D.ex <- rbinom(50, 1, .5)
...
ggroc <- ggplot(rocdata, aes(m = M, d = D)) + geom_roc()
calc_auc(ggroc)
Error in rlang::quo_get_expr():
! quo must be a quosure
Backtrace:
▆
1. ├─plotROC::calc_auc(ggroc)
2. │ └─rlang::quo_get_expr(l2$plot$mapping[current_name][[1]])
3. └─rlang::abort(message = message)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(plotROC)
Loading required package: ggplot2
>
> test_check("plotROC")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
...
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::nrow(calc_auc(ggroc_p))
5. ├─plotROC::calc_auc(ggroc_p)
6. │ └─rlang::quo_get_expr(l2$plot$mapping[current_name][[1]])
7. └─rlang::abort(message = message)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘examples.Rmd’ using rmarkdown
plotthis
- Version: 0.7.0
- GitHub: https://github.com/pwwang/plotthis
- Source code: https://github.com/cran/plotthis
- Date/Publication: 2025-05-31 05:00:02 UTC
- Number of recursive dependencies: 212
Run revdepcheck::cloud_details(, "plotthis") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘plotthis-Ex.R’ failed
The error most likely occurred in:
Name: QQPlot
Title: QQ plot
Aliases: QQPlot
** Examples
set.seed(8525)
...
26. │ └─ggplot2 (local) FUN(X[[i]], ...)
27. │ └─self$draw_group(group, panel_params, coord, ...)
28. │ └─ggplot2 (local) draw_group(...)
29. │ └─ggplot2 (local) draw_group(..., self = self)
30. └─base::.handleSimpleError(...)
31. └─rlang (local) h(simpleError(msg, call))
32. └─handlers[1L]
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
R 1.5Mb
help 3.3Mb
pmartR
- Version: 2.5.0
- GitHub: https://github.com/pmartR/pmartR
- Source code: https://github.com/cran/pmartR
- Date/Publication: 2025-04-23 18:00:02 UTC
- Number of recursive dependencies: 143
Run revdepcheck::cloud_details(, "pmartR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmartR)
>
> test_check("pmartR")
[ FAIL 1 | WARN 11 | SKIP 11 | PASS 2380 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
...
• plots/plot-spansres-n-biomolecule-bar.svg
• plots/plot-spansres.svg
• plots/plot-statres-anova-volcano.svg
• plots/plot-statres-anova.svg
• plots/plot-statres-combined-volcano.svg
• plots/plot-statres-combined.svg
• plots/plot-statres-gtest.svg
• plots/plot-totalcountfilt.svg
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 10.7Mb
sub-directories of 1Mb or more:
R 1.5Mb
help 1.5Mb
libs 6.6Mb
pmxTools
- Version: 1.3
- GitHub: https://github.com/kestrel99/pmxTools
- Source code: https://github.com/cran/pmxTools
- Date/Publication: 2023-02-21 16:00:08 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "pmxTools") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmxTools)
Loading required package: patchwork
>
> test_check("pmxTools")
[ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ]
...
44. └─handlers[1L]
45. └─cli::cli_abort(...)
46. └─rlang::abort(...)
[ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ]
Deleting unused snapshots:
• plot/conditioned-distplot.svg
• plot/perc.svg
Error: Test failures
Execution halted
```
In both
-
checking Rd files ... NOTE
checkRd: (-1) plot_scm.Rd:106: Lost braces; missing escapes or markup?
106 | \item{lookupDF}{A data frame containing a lookup table for node labels. By default, {plot_scm} will use the PSN model names. If a lookup table containing the fields `Model` and `Alias` is provided, model names in `Model` will be replaced in the output plots by mtaching labels in `Alias`.}
| ^
checkRd: (-1) rnm.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rnm.Rd:71: Lost braces in \itemize; meant \describe ?
-
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘DiagrammeR’
pollster
- Version: 0.1.6
- GitHub: NA
- Source code: https://github.com/cran/pollster
- Date/Publication: 2023-05-12 19:00:05 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "pollster") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘crosstab3way.Rmd’ using rmarkdown
Quitting from crosstab3way.Rmd:40-54 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! object is invalid:
- every label must be named.
...
3. └─S7::new_object(labels)
4. └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'crosstab3way.Rmd' failed with diagnostics:
object is invalid:
- every label must be named.
--- failed re-building ‘crosstab3way.Rmd’
--- re-building ‘crosstabs.Rmd’ using rmarkdown
```
poppr
- Version: 2.9.6
- GitHub: https://github.com/grunwaldlab/poppr
- Source code: https://github.com/cran/poppr
- Date/Publication: 2024-03-15 17:40:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "poppr") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘poppr-Ex.R’ failed
The error most likely occurred in:
Name: genotype_curve
Title: Produce a genotype accumulation curve
Aliases: genotype_curve
** Examples
data(nancycats)
nan_geno <- genotype_curve(nancycats)
Error: object is invalid:
- every label must be named.
Execution halted
```
In both
-
checking re-building of vignette outputs ... WARNING
``
Error(s) in re-building vignettes:
...
--- re-building ‘algo.Rnw’ using knitr
Error: processing vignette 'algo.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'algo.tex' failed.
LaTeX errors:
! LaTeX Error: Filecolortbl.sty' not found.
Type X to quit or to proceed,
or enter new name. (Default extension: sty)
...
l.4 \makeatletter
^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘algo.Rnw’
SUMMARY: processing the following file failed:
‘algo.Rnw’
Error: Vignette re-building failed.
Execution halted
```
PoweREST
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/PoweREST
- Date/Publication: 2024-09-09 09:30:02 UTC
- Number of recursive dependencies: 180
Run revdepcheck::cloud_details(, "PoweREST") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘PoweREST-Ex.R’ failed
The error most likely occurred in:
Name: vis_XGBoost
Title: Visualization of the power estimations from XGBoost
Aliases: vis_XGBoost
** Examples
data(power_example)
...
Good: !!myquosure * rhs
Backtrace:
▆
1. └─PoweREST::vis_XGBoost(...)
2. ├─base::eval(parse(text = txt3))
3. │ └─base::eval(parse(text = txt3))
4. └─rayshader::plot_gg(mtplot, width = 3.5, raytrace = FALSE, preview = TRUE)
5. └─rlang:::Ops.quosure(ggplotobj2$layers[[i]]$geom$default_aes$size, pointcontract)
6. └─rlang::abort(...)
Execution halted
```
PPQplan
- Version: 1.1.0
- GitHub: https://github.com/allenzhuaz/PPQplan
- Source code: https://github.com/cran/PPQplan
- Date/Publication: 2020-10-08 04:30:06 UTC
- Number of recursive dependencies: 116
Run revdepcheck::cloud_details(, "PPQplan") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘PPQnote.Rmd’ using rmarkdown
--- finished re-building ‘PPQnote.Rmd’
--- re-building ‘PPQplan-vignette.Rmd’ using rmarkdown
```
In both
-
checking installed package size ... NOTE
installed size is 12.1Mb
sub-directories of 1Mb or more:
doc 12.0Mb
-
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ppseq
- Version: 0.2.5
- GitHub: https://github.com/zabore/ppseq
- Source code: https://github.com/cran/ppseq
- Date/Publication: 2024-09-04 22:20:02 UTC
- Number of recursive dependencies: 101
Run revdepcheck::cloud_details(, "ppseq") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘one_sample_expansion.Rmd’ using rmarkdown
Quitting from one_sample_expansion.Rmd:182-188 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
! subscript out of bounds
Backtrace:
...
Error: processing vignette 'two_sample_randomized.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘two_sample_randomized.Rmd’
SUMMARY: processing the following files failed:
‘one_sample_expansion.Rmd’ ‘two_sample_randomized.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 11.0Mb
sub-directories of 1Mb or more:
doc 10.5Mb
precintcon
- Version: 2.3.0
- GitHub: https://github.com/lucasvenez/precintcon
- Source code: https://github.com/cran/precintcon
- Date/Publication: 2016-07-17 13:49:19
- Number of recursive dependencies: 25
Run revdepcheck::cloud_details(, "precintcon") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘precintcon-Ex.R’ failed
The error most likely occurred in:
Name: pplot.deciles
Title: Plot deciles
Aliases: pplot.deciles precintcon.plot.deciles
Keywords: deciles precipitation
** Examples
...
1. └─precintcon::pplot.deciles(monthly)
2. └─precintcon::precintcon.plot.deciles(...)
3. └─base::mapply(...)
4. └─precintcon (local) <fn>(...)
5. └─ggplot2::geom_boxplot(...)
6. └─ggplot2::layer(...)
7. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)")
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
Execution halted
```
predint
- Version: 2.2.1
- GitHub: https://github.com/MaxMenssen/predint
- Source code: https://github.com/cran/predint
- Date/Publication: 2024-03-04 15:10:03 UTC
- Number of recursive dependencies: 68
Run revdepcheck::cloud_details(, "predint") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(predint)
Loading required package: ggplot2
Loading required package: lme4
Loading required package: Matrix
Loading required package: MASS
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot.R:16:9'): plot must be a ggplot ─────────────────────────
is.list(qp_plot) is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 304 ]
Error: Test failures
Execution halted
```
PredPsych
- Version: 0.4
- GitHub: NA
- Source code: https://github.com/cran/PredPsych
- Date/Publication: 2019-07-23 08:20:05 UTC
- Number of recursive dependencies: 107
Run revdepcheck::cloud_details(, "PredPsych") for more info
Newly broken
- checking whether package ‘PredPsych’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘PredPsych’
See ‘/tmp/workdir/PredPsych/new/PredPsych.Rcheck/00install.out’ for details.
predRupdate
- Version: 0.2.0
- GitHub: https://github.com/GlenMartin31/predRupdate
- Source code: https://github.com/cran/predRupdate
- Date/Publication: 2024-08-23 14:20:02 UTC
- Number of recursive dependencies: 112
Run revdepcheck::cloud_details(, "predRupdate") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(predRupdate)
>
> test_check("predRupdate")
$OE_ratio
[1] 1.900612
...
expected[2:2]: "ggplot"
── Failure ('test-flex_calplot.R:28:3'): flex_calplot works ────────────────────
class(...) (actual) not equal to c("gg", "ggplot") (expected).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 2 | WARN 0 | SKIP 4 | PASS 229 ]
Error: Test failures
Execution halted
```
priorsense
- Version: 1.1.0
- GitHub: https://github.com/n-kall/priorsense
- Source code: https://github.com/cran/priorsense
- Date/Publication: 2025-04-10 14:00:02 UTC
- Number of recursive dependencies: 120
Run revdepcheck::cloud_details(, "priorsense") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(priorsense)
>
> test_check("priorsense")
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 91 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test_cmdstan.R:5:3', 'test_moment_matching.R:15:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_plots.R:103:5'): pagination of plots works as expected ───────
powerscale_plot_quantities(ps, variables_per_page = Inf) has length 1, not length 11.
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 91 ]
Error: Test failures
Execution halted
```
probably
- Version: 1.1.0
- GitHub: https://github.com/tidymodels/probably
- Source code: https://github.com/cran/probably
- Date/Publication: 2025-05-21 13:30:02 UTC
- Number of recursive dependencies: 129
Run revdepcheck::cloud_details(, "probably") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...expectedis a list
── Failure ('test-cal-plot.R:256:3'): Binary logistic functions work with group argument ──
res$labels (actual) not equal to list(x = "Probability", y = "Predicted Event Rate") (expected`).
actual is an S7 object of class
expected is a list
[ FAIL 2 | WARN 0 | SKIP 84 | PASS 549 ]
Error: Test failures
Execution halted
```
processmapR
- Version: 0.5.6
- GitHub: https://github.com/bupaverse/processmapr
- Source code: https://github.com/cran/processmapR
- Date/Publication: 2024-12-03 12:50:02 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "processmapR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(processmapR)
Attaching package: 'processmapR'
The following object is masked from 'package:stats':
...
10. └─processmapR:::return_plotly(p, plotly)
11. ├─plotly::ggplotly(p)
12. └─plotly:::ggplotly.ggplot(p)
13. └─plotly::gg2list(...)
── Failure ('test_trace_explorer.R:240:3'): test trace_explorer on eventlog with param plotly ──
chart inherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'plotly'.
[ FAIL 6 | WARN 0 | SKIP 11 | PASS 105 ]
Error: Test failures
Execution halted
```
psborrow
- Version: 0.2.2
- GitHub: NA
- Source code: https://github.com/cran/psborrow
- Date/Publication: 2025-02-19 13:40:02 UTC
- Number of recursive dependencies: 103
Run revdepcheck::cloud_details(, "psborrow") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(psborrow)
>
> test_check("psborrow")
Input all is found in pred. Any other input is disregarded.
[ FAIL 20 | WARN 0 | SKIP 1 | PASS 134 ]
...
expected: "gg"
── Failure ('test-plots.R:126:5'): Ensure output is producing a ggplot2 object with appropriate parameters ──
p1$labels$yintercept (actual) not equal to "ref" (expected).
actual is NULL
expected is a character vector ('ref')
[ FAIL 20 | WARN 0 | SKIP 1 | PASS 134 ]
Error: Test failures
Execution halted
```
-
checking whether package ‘psborrow’ can be installed ... WARNING
Found the following significant warnings:
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/tmp/workdir/psborrow/new/psborrow.Rcheck/00install.out’ for details.
psc
- Version: 1.3.0
- GitHub: https://github.com/richJJackson/psc
- Source code: https://github.com/cran/psc
- Date/Publication: 2025-05-29 15:10:02 UTC
- Number of recursive dependencies: 190
Run revdepcheck::cloud_details(, "psc") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘psc-vignette.Rmd’ using rmarkdown
Quitting from psc-vignette.Rmd:176-178 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'psc-vignette.Rmd' failed with diagnostics:
...
ℹ In index: 1.
Caused by error:
! Can't find method for build_ggplot(S3<gg/ggplot>).
--- failed re-building ‘psc-vignette.Rmd’
SUMMARY: processing the following file failed:
‘psc-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
```
pscore
- Version: 0.4.0
- GitHub: https://github.com/JWiley/score-project
- Source code: https://github.com/cran/pscore
- Date/Publication: 2022-05-13 22:30:02 UTC
- Number of recursive dependencies: 156
Run revdepcheck::cloud_details(, "pscore") for more info
Newly broken
- checking whether package ‘pscore’ can be installed ... WARNING
Found the following significant warnings:
Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details.
pubh
- Version: 2.0.0
- GitHub: https://github.com/josie-athens/pubh
- Source code: https://github.com/cran/pubh
- Date/Publication: 2024-10-08 05:00:03 UTC
- Number of recursive dependencies: 158
Run revdepcheck::cloud_details(, "pubh") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
Name: axis_labs
Title: Apply labels from variables to axis-labels in plots.
Aliases: axis_labs
** Examples
data(kfm, package = "ISwR")
...
kfm |>
+ gf_point(weight ~ dl.milk) |>
+ gf_lm(col = 2, interval = "confidence", col = 2) |>
+ axis_labs()
Warning in rep(yes, length.out = len) :
'x' is NULL so the result will be NULL
Error in ans[ypos] <- rep(yes, length.out = len)[ypos] :
replacement has length zero
Calls: axis_labs -> ifelse
Execution halted
```
qad
- Version: 1.0.4
- GitHub: https://github.com/griefl/qad
- Source code: https://github.com/cran/qad
- Date/Publication: 2022-12-14 16:50:02 UTC
- Number of recursive dependencies: 92
Run revdepcheck::cloud_details(, "qad") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
...expected[2:2]: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) ECBC.Rd:39: Lost braces; missing escapes or markup?
39 | Let (u_i,v_i) := (F_n(x_i),G_n(y_i)) be the pseudo-observations for i in \{1,\ldots,n\} and (u_1',v_1'),\ldots, (u_m',v_m') the distinct pairs of pseudo-observations with m leq n. Moreover set S_1:=\{0, u_1, \ldots, u_{m_1}\} and S_2:=\{0, v_1,\ldots, v_{m_2}\} and define the quantities t_i,r_i and s_i for i=1,\ldots, m by
| ^
checkRd: (-1) ECBC.Rd:39: Lost braces; missing escapes or markup?
39 | Let (u_i,v_i) := (F_n(x_i),G_n(y_i)) be the pseudo-observations for i in \{1,\ldots,n\} and (u_1',v_1'),\ldots, (u_m',v_m') the distinct pairs of pseudo-observations with m leq n. Moreover set S_1:=\{0, u_1, \ldots, u_{m_1}\} and S_2:=\{0, v_1,\ldots, v_{m_2}\} and define the quantities t_i,r_i and s_i for i=1,\ldots, m by
| ^
checkRd: (-1) ECBC.Rd:49: Lost braces; missing escapes or markup?
49 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula.
| ^
checkRd: (-1) ECBC.Rd:49: Lost braces; missing escapes or markup?
...
| ^
checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup?
52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula.
| ^
checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup?
52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula.
| ^
checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup?
52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula.
| ^
qdap
- Version: 2.4.6
- GitHub: https://github.com/trinker/qdap
- Source code: https://github.com/cran/qdap
- Date/Publication: 2023-05-11 06:10:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "qdap") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("qdap")
Loading required package: qdapDictionaries
Loading required package: qdapRegex
Loading required package: qdapTools
Loading required package: RColorBrewer
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dispersion_plot.R:6:5'): dispersion_plot outputs a ggplot object ──
all(class(m) == c("gg", "ggplot")) is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 1 | WARN 3 | SKIP 0 | PASS 217 ]
Error: Test failures
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 6.1Mb
sub-directories of 1Mb or more:
R 1.5Mb
data 2.0Mb
help 1.5Mb
-
checking Rd files ... NOTE
checkRd: (-1) check_text.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) check_text.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
...
checkRd: (-1) word_stats.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) word_stats.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
-
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘gplots’
qgcompint
- Version: 1.0.0
- GitHub: https://github.com/alexpkeil1/qgcompint
- Source code: https://github.com/cran/qgcompint
- Date/Publication: 2025-03-12 16:40:02 UTC
- Number of recursive dependencies: 155
Run revdepcheck::cloud_details(, "qgcompint") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘qgcompint-Ex.R’ failed
The error most likely occurred in:
Name: plot.qgcompemmfit
Title: Default plotting method for a qgcompemmfit object
Aliases: plot.qgcompemmfit
** Examples
set.seed(50)
...
pp1 = plot(qfit4, emmval=1, suppressprint=TRUE)
pp2 = plot(qfit4, emmval=2, suppressprint=TRUE)
pp1 + theme_linedraw() # can use with other ggplot functions
overlay (fussy to work with)
ppom <- ggplot_build(pp0 + pp1[2] + pp2[[2]] + scale_color_discrete(guide="none"))
ppom <- ggplot_build(pp0ee + pp1ee[2] + pp2ee[[2]] + scale_color_discrete(guide="none"))
Error in S7::prop(x, "meta")[[i]] : subscript out of bounds
Calls: ggplot_build -> [[ -> [[.ggplot2::gg
Execution halted
```
qicharts2
- Version: 0.8.0
- GitHub: https://github.com/anhoej/qicharts2
- Source code: https://github.com/cran/qicharts2
- Date/Publication: 2025-05-15 08:00:02 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "qicharts2") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘qicharts2-Ex.R’ failed
The error most likely occurred in:
Name: bchart
Title: Bernoulli CUSUM chart for binary data (EXPERIMENTAL)
Aliases: bchart
** Examples
Generate 1000 random successes and failures with success rate = 0.02
...
ℹ Please use tidy evaluation idioms with aes()
ℹ The deprecated feature was likely used in the qicharts2 package.
Please report the issue to the authors.
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the qicharts2 package.
Please report the issue to the authors.
Error: object is invalid:
- every label must be named.
Execution halted
```
quantities
- Version: 0.2.3
- GitHub: https://github.com/r-quantities/quantities
- Source code: https://github.com/cran/quantities
- Date/Publication: 2025-01-18 21:20:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "quantities") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
quickPlot
- Version: 1.0.2
- GitHub: https://github.com/PredictiveEcology/quickPlot
- Source code: https://github.com/cran/quickPlot
- Date/Publication: 2023-07-02 05:20:02 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "quickPlot") for more info
Newly broken
-
checking tests ... ERROR
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("quickPlot")
Loading required package: quickPlot
Error in pgmatrix(grobToPlot, col, real, size, minv, maxv, legend, legendText, :
object 'nrowLegText' not found
Error in pgmatrix(grobToPlot, col, real, size, minv, maxv, legend, legendText, :
object 'nrowLegText' not found
...
• Plot/test46.png
• Plot/test47.png
• Plot/test5.png
• Plot/test50.png
• Plot/test6.png
• Plot/test7.png
• Plot/test8.png
• Plot/test9.png
Error: Test failures
Execution halted
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘iii-plotting.Rmd’ using rmarkdown
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘fastshp’
quickReg
- Version: 1.5.0
- GitHub: NA
- Source code: https://github.com/cran/quickReg
- Date/Publication: 2017-09-28 06:41:12 UTC
- Number of recursive dependencies: 71
Run revdepcheck::cloud_details(, "quickReg") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘quickReg.Rmd’ using rmarkdown
Quitting from quickReg.Rmd:130-162 [plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! object is invalid:
- every label must be named.
...
Error: processing vignette 'quickReg.Rmd' failed with diagnostics:
object is invalid:
- every label must be named.
--- failed re-building ‘quickReg.Rmd’
SUMMARY: processing the following file failed:
‘quickReg.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘psych’
All declared Imports should be used.
-
checking Rd files ... NOTE
checkRd: (-1) display_table.Rd:37: Lost braces; missing escapes or markup?
37 | \item{normtest}{A character indicating test of normality, the default method is \code{\link{shapiro.test}} when sample size no more than 5000, otherwise \code{\link[nortest]{lillie.test}} {Kolmogorov-Smirnov} is used, see package \strong{nortest} for more methods.Use 'shapiro.test', 'lillie.test', 'ad.test', etc to specify methods.}
| ^
-
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘PredictABEL’
R4GoodPersonalFinances
- Version: 1.0.0
- GitHub: https://github.com/R4GoodAcademy/R4GoodPersonalFinances
- Source code: https://github.com/cran/R4GoodPersonalFinances
- Date/Publication: 2025-06-04 11:00:09 UTC
- Number of recursive dependencies: 107
Run revdepcheck::cloud_details(, "R4GoodPersonalFinances") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘R4GoodPersonalFinances-Ex.R’ failed
The error most likely occurred in:
Name: plot_retirement_ruin
Title: Plotting retirement ruin
Aliases: plot_retirement_ruin
** Examples
plot_retirement_ruin(
...
+ portfolio_return_mean = 0.034,
+ portfolio_return_sd = 0.15,
+ age = 65,
+ gompertz_mode = 88,
+ gompertz_dispersion = 10,
+ portfolio_value = 1000000,
+ monthly_spendings = 3000
+ )
Error: object must be an , not a S3
Execution halted
```
Radviz
- Version: 0.9.4
- GitHub: https://github.com/yannabraham/Radviz
- Source code: https://github.com/cran/Radviz
- Date/Publication: 2025-05-09 06:30:02 UTC
- Number of recursive dependencies: 61
Run revdepcheck::cloud_details(, "Radviz") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘Radviz-Ex.R’ failed
The error most likely occurred in:
Name: Radviz-package
Title: Radviz: Project Multidimensional Data in 2D Space
Aliases: Radviz Radviz-package
Keywords: internal
** Examples
...
Warning: aes_string() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the Radviz package.
Please report the issue at https://github.com/yannabraham/Radviz/issues.
plot(rv,anchors.only=FALSE)
Error in plot.radviz(rv, anchors.only = FALSE) :
'language' object cannot be coerced to type 'double'
Calls: plot -> plot.radviz
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘multivariate_analysis.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 6.6Mb
sub-directories of 1Mb or more:
doc 3.9Mb
libs 2.5Mb
RamanMP
- Version: 1.0
- GitHub: NA
- Source code: https://github.com/cran/RamanMP
- Date/Publication: 2021-07-09 08:10:04 UTC
- Number of recursive dependencies: 59
Run revdepcheck::cloud_details(, "RamanMP") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘RamanMP-Ex.R’ failed
The error most likely occurred in:
Name: peak.finder
Title: Peaks identification
Aliases: peak.finder
Keywords: peaks
** Examples
data("MPdatabase")
peak.data<-peak.finder(MPdatabase[,c(1,7)], threshold = 500, m=7)
Error: object properties are invalid:
- @size must be , , or , not
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 8.1Mb
sub-directories of 1Mb or more:
data 8.0Mb
randomForestExplainer
- Version: 0.10.1
- GitHub: https://github.com/ModelOriented/randomForestExplainer
- Source code: https://github.com/cran/randomForestExplainer
- Date/Publication: 2020-07-11 20:30:02 UTC
- Number of recursive dependencies: 89
Run revdepcheck::cloud_details(, "randomForestExplainer") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘randomForestExplainer-Ex.R’ failed
The error most likely occurred in:
Name: plot_importance_ggpairs
Title: Plot importance measures with ggpairs
Aliases: plot_importance_ggpairs
** Examples
forest <- randomForest::randomForest(Species ~ ., data = iris, localImp = TRUE, ntree = 200)
frame <- measure_importance(forest, measures = c("mean_min_depth", "times_a_root"))
plot_importance_ggpairs(frame, measures = c("mean_min_depth", "times_a_root"))
Error in +.gg(e1, item) :
'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
Calls: plot_importance_ggpairs -> +.gg -> add_list_to_ggmatrix -> +.gg
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(randomForestExplainer)
>
> test_check("randomForestExplainer")
[ FAIL 12 | WARN 71 | SKIP 0 | PASS 49 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
Backtrace:
▆
1. └─randomForestExplainer::plot_importance_rankings(ranger_s) at test_ranger.R:185:3
2. └─GGally:::+.gg(plot, ggtitle(main))
3. └─GGally:::add_list_to_ggmatrix(e1, e2)
4. └─GGally:::+.gg(e1, item)
[ FAIL 12 | WARN 71 | SKIP 0 | PASS 49 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘randomForestExplainer.Rmd’ using rmarkdown
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
rassta
- Version: 1.0.6
- GitHub: https://github.com/bafuentes/rassta
- Source code: https://github.com/cran/rassta
- Date/Publication: 2024-08-19 06:20:13 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "rassta") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘rassta-Ex.R’ failed
The error most likely occurred in:
Name: select_functions
Title: Select Constrained Univariate Distribution Functions
Aliases: select_functions
** Examples
require(terra)
...
tvars <- terra::rast(tf)
Single-layer SpatRaster of topographic classification units
5 classification units
tcf <- list.files(path = p, pattern = "topography.tif", full.names = TRUE)
tcu <- terra::rast(tcf)
Automatic selection of distribution functions
tdif <- select_functions(cu.rast = tcu, var.rast = tvars, fun = mean)
Error in pm[[2]] : subscript out of bounds
Calls: select_functions -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("rassta")
- }
Attaching package: 'rassta'
...
test_select_functions.R....... 0 tests
test_select_functions.R....... 0 tests
test_select_functions.R....... 0 tests
test_select_functions.R....... 0 tests
test_select_functions.R....... 0 tests
test_select_functions.R....... 0 tests
test_select_functions.R....... 0 tests
test_select_functions.R....... 0 tests Error in pm[[2]] : subscript out of bounds
Calls: ... select_functions -> -> ggplotly.ggplot -> gg2list
Execution halted
```
rasterdiv
- Version: 0.3.6
- GitHub: https://github.com/mattmar/rasterdiv
- Source code: https://github.com/cran/rasterdiv
- Date/Publication: 2024-11-06 11:20:03 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "rasterdiv") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘rasterdiv_01_Basics.Rmd’ using rmarkdown
rater
- Version: 1.3.1
- GitHub: https://github.com/jeffreypullin/rater
- Source code: https://github.com/cran/rater
- Date/Publication: 2023-09-11 17:40:02 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "rater") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rater)
- The rater package uses
Stan to fit bayesian models.
- If you are working on a local, multicore CPU with excess RAM please call:
- options(mc.cores = parallel::detectCores())
- This will allow Stan to run inference on multiple cores in parallel.
...
── Failure ('test_plotting.R:65:3'): plot_theta_points output has correct type ──
get_geoms(ds_plot) (actual) not equal to c("GeomPoint", "GeomErrorbar") (expected).
names(actual) is a character vector ('geom_point', 'geom_errorbar')
names(expected) is absent
[ FAIL 4 | WARN 0 | SKIP 6 | PASS 375 ]
Error: Test failures
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 124.5Mb
sub-directories of 1Mb or more:
libs 123.7Mb
-
checking Rd files ... NOTE
checkRd: (-1) as_mcmc.list.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Convert a rater_fit object to a {coda} \code{mcmc.list} object.}
| ^
checkRd: (-1) as_mcmc.list.Rd:16: Lost braces; missing escapes or markup?
16 | Convert a rater_fit object to a {coda} \code{mcmc.list} object.
| ^
checkRd: (-1) as_mcmc.list.Rd:13: Lost braces; missing escapes or markup?
13 | A {coda} mcmc.list object.
| ^
-
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
ratlas
- Version: 0.1.0
- GitHub: https://github.com/atlas-aai/ratlas
- Source code: https://github.com/cran/ratlas
- Date/Publication: 2024-11-06 16:20:02 UTC
- Number of recursive dependencies: 136
Run revdepcheck::cloud_details(, "ratlas") for more info
Newly broken
-
checking tests ... ERROR
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ratlas)
NOTE: Either Arial Narrow or Montserrat fonts are required to use these themes.
Please use ratlas::import_montserrat() to install Montserrat and
if Arial Narrow is not on your system, please see https://bit.ly/arialnarrow
>
...
• okabeito-color-scales/okabeito-fill.svg
• okabeito-color-scales/okabeito-lighten.svg
• stat-bin/bins30-bound0.svg
• stat-bin/no-color-hist.svg
• stat-bin/one-bin.svg
• stat-bin/trimmed-hist-bound0.svg
• stat-bin/trimmed-hist-center0.svg
• themes/theme-atlas.svg
Error: Test failures
Execution halted
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘plotting.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
doc 2.6Mb
rstudio 1.6Mb
rbioacc
- Version: 1.2.1
- GitHub: NA
- Source code: https://github.com/cran/rbioacc
- Date/Publication: 2024-02-27 01:40:02 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "rbioacc") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rbioacc)
>
> test_check("rbioacc")
SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
Chain 1:
...
expected: TRUE
── Failure ('test-ppc.R:16:5'): plot ppc ───────────────────────────────────────
all(class(ppc(fit_MGSG)) == c("gg", "ggplot")) is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 20 | WARN 103 | SKIP 9 | PASS 60 ]
Error: Test failures
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 94.5Mb
sub-directories of 1Mb or more:
libs 93.8Mb
-
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
rbiom
- Version: 2.2.0
- GitHub: https://github.com/cmmr/rbiom
- Source code: https://github.com/cran/rbiom
- Date/Publication: 2025-04-04 20:20:02 UTC
- Number of recursive dependencies: 106
Run revdepcheck::cloud_details(, "rbiom") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘rbiom-Ex.R’ failed
The error most likely occurred in:
Name: bdiv_heatmap
Title: Display beta diversities in an all vs all grid.
Aliases: bdiv_heatmap
** Examples
library(rbiom)
...
18. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
19. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
20. │ └─base::withCallingHandlers(...)
21. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
22. └─l$layer_data(plot@data)
23. └─ggplot2::layer_data(..., self = self)
24. └─ggplot2:::unrowname(data)
25. └─cli::cli_abort("Can only remove rownames from {.cls data.frame} and {.cls matrix} objects.")
26. └─rlang::abort(...)
Execution halted
```
reda
- Version: 0.5.4
- GitHub: https://github.com/wenjie2wang/reda
- Source code: https://github.com/cran/reda
- Date/Publication: 2022-07-08 21:50:02 UTC
- Number of recursive dependencies: 50
Run revdepcheck::cloud_details(, "reda") for more info
Newly broken
- checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE) &&
- utils::packageVersion("tinytest") >= "1.1.0") {
-
Set a seed to make the test deterministic
- set.seed(808)
- tinytest::test_package("reda", ncpu = NULL,
...
call| --> lty = 1:4, col = 1:4)), c("gg", "ggplot"))
diff| Lengths (2, 5) differ (string compare on first 2)
diff| 1 string mismatch
----- FAILED[data]: test_rateReg.R<152--152>
call| expect_equivalent(class(plot(mcf_splineFit)), c("gg", "ggplot"))
diff| Lengths (2, 5) differ (string compare on first 2)
diff| 1 string mismatch
Error: 8 out of 191 tests failed
In addition: There were 16 warnings (use warnings() to see them)
Execution halted
```
In both
-
checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
-
checking installed package size ... NOTE
installed size is 8.0Mb
sub-directories of 1Mb or more:
doc 3.3Mb
libs 4.0Mb
-
checking Rd files ... NOTE
checkRd: (-1) simEvent.Rd:112: Lost braces; missing escapes or markup?
112 | and another argument named {zCoef} for covariate coefficient vector.
| ^
regtomean
- Version: 1.2
- GitHub: NA
- Source code: https://github.com/cran/regtomean
- Date/Publication: 2024-12-17 15:00:02 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "regtomean") for more info
Newly broken
- checking whether package ‘regtomean’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘regtomean’
See ‘/tmp/workdir/regtomean/new/regtomean.Rcheck/00install.out’ for details.
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘plyr’
rempsyc
- Version: 0.1.9
- GitHub: https://github.com/rempsyc/rempsyc
- Source code: https://github.com/cran/rempsyc
- Date/Publication: 2025-02-01 23:40:05 UTC
- Number of recursive dependencies: 175
Run revdepcheck::cloud_details(, "rempsyc") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘rempsyc-Ex.R’ failed
The error most likely occurred in:
Name: nice_normality
Title: Easy normality check per group
Aliases: nice_normality
Keywords: QQ density distribution normality plots
** Examples
...
33. │ └─ggplot2 (local) FUN(X[[i]], ...)
34. │ └─self$draw_group(group, panel_params, coord, ...)
35. │ └─ggplot2 (local) draw_group(...)
36. │ └─ggplot2 (local) draw_group(..., self = self)
37. └─base::.handleSimpleError(...)
38. └─rlang (local) h(simpleError(msg, call))
39. └─handlers[1L]
40. └─cli::cli_abort(...)
41. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rempsyc)
Suggested APA citation: Thériault, R. (2023). rempsyc: Convenience functions for psychology.
Journal of Open Source Software, 8(87), 5466. https://doi.org/10.21105/joss.05466
>
> test_check("rempsyc")
[ FAIL 2 | WARN 2 | SKIP 20 | PASS 44 ]
...
- │ └─ggplot2 (local) draw_group(..., self = self)
- └─base::.handleSimpleError(...)
- └─rlang (local) h(simpleError(msg, call))
- └─handlers[1L]
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 2 | WARN 2 | SKIP 20 | PASS 44 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘assumptions.Rmd’ using rmarkdown
Quitting from assumptions.Rmd:134-140 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'assumptions.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error in check_linewidth():
! could not find function "check_linewidth"
--- failed re-building ‘assumptions.Rmd’
--- re-building ‘contrasts.Rmd’ using rmarkdown
```
RevGadgets
- Version: 1.2.1
- GitHub: https://github.com/revbayes/RevGadgets
- Source code: https://github.com/cran/RevGadgets
- Date/Publication: 2023-11-29 20:30:02 UTC
- Number of recursive dependencies: 131
Run revdepcheck::cloud_details(, "RevGadgets") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RevGadgets)
>
> test_check("RevGadgets")
|
| | 0%
...
Backtrace:
▆
1. ├─RevGadgets::plotFBDTree(...) at test_plotFBDTree.R:12:3
2. │ └─RevGadgets:::plotTreeFull(...)
3. └─base::loadNamespace(x)
4. └─base (local) runHook(".onLoad", env, package.lib, package)
[ FAIL 1 | WARN 11 | SKIP 0 | PASS 138 ]
Error: Test failures
Execution halted
```
rifreg
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/rifreg
- Date/Publication: 2024-05-01 18:42:07 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "rifreg") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rifreg)
Loading required package: ggplot2
>
> test_check("rifreg")
Bootstrapping Standard Errors...
...
expected[2:2]: "ggplot"
── Failure ('test-plot.R:190:3'): Generic plot method generates a plot for RIF of interquantile ratio ──
class(rifreg_plot) (actual) not equal to c("gg", "ggplot") (expected).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 10 | WARN 3525 | SKIP 0 | PASS 66 ]
Error: Test failures
Execution halted
```
rmweather
- Version: 0.2.62
- GitHub: https://github.com/skgrange/rmweather
- Source code: https://github.com/cran/rmweather
- Date/Publication: 2025-02-21 00:20:02 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "rmweather") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
...
── Failure ('test_02_rmw_functions.R:83:3'): Test training function ────────────
class(rmw_plot_importance(df_importance)) not identical to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test_02_rmw_functions.R:90:3'): Test training function ────────────
class(plot_test) not identical to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 40 ]
Error: Test failures
Execution halted
```
RNAseqQC
- Version: 0.2.1
- GitHub: https://github.com/frederikziebell/RNAseqQC
- Source code: https://github.com/cran/RNAseqQC
- Date/Publication: 2024-07-15 14:40:02 UTC
- Number of recursive dependencies: 159
Run revdepcheck::cloud_details(, "RNAseqQC") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘data.Rmd’ using rmarkdown
--- finished re-building ‘data.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown
```
In both
- checking installed package size ... NOTE
installed size is 7.0Mb
sub-directories of 1Mb or more:
data 4.5Mb
doc 2.3Mb
roahd
- Version: 1.4.3
- GitHub: https://github.com/astamm/roahd
- Source code: https://github.com/cran/roahd
- Date/Publication: 2021-11-04 00:10:02 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "roahd") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘roahd-Ex.R’ failed
The error most likely occurred in:
Name: plot.depthgram
Title: Specialized method to plot 'depthgram' objects
Aliases: plot.depthgram
** Examples
N <- 50
...
+ N,
+ centerline = sin(2 * pi * grid),
+ Cov = Cov
+ )
names <- paste0("id_", 1:nrow(Data[[1]]))
DG <- depthgram(Data, marginal_outliers = TRUE, ids = names)
plot(DG)
Error in pm[[2]] : subscript out of bounds
Calls: plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
data 5.0Mb
doc 1.7Mb
-
checking Rd files ... NOTE
checkRd: (-1) fData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
...
checkRd: (-1) outliergram.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:55-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:59-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:66-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
robCompositions
- Version: 2.4.1
- GitHub: NA
- Source code: https://github.com/cran/robCompositions
- Date/Publication: 2023-08-25 15:30:06 UTC
- Number of recursive dependencies: 139
Run revdepcheck::cloud_details(, "robCompositions") for more info
Newly broken
- checking whether package ‘robCompositions’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘robCompositions’
See ‘/tmp/workdir/robCompositions/new/robCompositions.Rcheck/00install.out’ for details.
In both
-
checking re-building of vignette outputs ... WARNING
``
Error(s) in re-building vignettes:
--- re-building ‘imputation.Rnw’ using knitr
Error: processing vignette 'imputation.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'imputation.tex' failed.
LaTeX errors:
! LaTeX Error: Filescrartcl.cls' not found.
Type X to quit or to proceed,
or enter new name. (Default extension: cls)
...
l.3 \usepackage
[pdftex]{hyperref}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘robCompositions-overview.Rnw’
SUMMARY: processing the following files failed:
‘imputation.Rnw’ ‘robCompositions-overview.Rnw’
Error: Vignette re-building failed.
Execution halted
```
-
checking installed package size ... NOTE
installed size is 24.0Mb
sub-directories of 1Mb or more:
data 2.0Mb
libs 20.8Mb
-
checking Rd files ... NOTE
checkRd: (-1) GDPsatis.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GDPsatis.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GDPsatis.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GDPsatis.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GDPsatis.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GDPsatis.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GDPsatis.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GDPsatis.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) aDist.Rd:19: Lost braces
19 | sets, or a distance matrix in case code{y} is not supplied.
...
| ^
checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup?
25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.}
| ^
checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup?
25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.}
| ^
checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup?
25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.}
| ^
-
checking data for non-ASCII characters ... NOTE
Note: found 1 marked UTF-8 string
romic
- Version: 1.1.3
- GitHub: NA
- Source code: https://github.com/cran/romic
- Date/Publication: 2023-09-21 05:40:02 UTC
- Number of recursive dependencies: 109
Run revdepcheck::cloud_details(, "romic") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
- │ │ └─base::withCallingHandlers(...)
- │ ├─plotly::ggplotly(heatmap_plot) %>% plotly::layout(margin = 0)
- │ ├─plotly::ggplotly(heatmap_plot)
- │ └─plotly:::ggplotly.ggplot(heatmap_plot)
- │ └─plotly::gg2list(...)
- └─plotly::layout(., margin = 0)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 66 ]
Error: Test failures
Execution halted
```
In both
- checking Rd files ... NOTE
checkRd: (-1) update_tidy_omic.Rd:16-17: Lost braces
16 | in \code{updated_tidy_data} (names) and the table {features, samples,
| ^
roptions
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/roptions
- Date/Publication: 2020-05-11 11:10:06 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "roptions") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘roptions-Ex.R’ failed
The error most likely occurred in:
Name: box.spread
Title: Box Spread Strategy Function
Aliases: box.spread
** Examples
box.spread(100, 105, 95, 110, 3.2, 2.6, 1.1, 2.4)
...
35 5.7
36 5.7
37 5.7
38 5.7
39 5.7
40 5.7
41 5.7
Error in pm[[2]] : subscript out of bounds
Calls: box.spread -> print -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
rPBK
- Version: 0.2.4
- GitHub: NA
- Source code: https://github.com/cran/rPBK
- Date/Publication: 2024-02-26 17:00:02 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "rPBK") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...expected`: TRUE
── Failure ('test-ppc.R:7:5'): ppc ─────────────────────────────────────────────
all(class(ppcPBK_C4) == c("gg", "ggplot")) is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 6 ]
Error: Test failures
Execution halted
```
In both
-
checking whether package ‘rPBK’ can be installed ... WARNING
Found the following significant warnings:
Warning: namespace ‘colorspace’ is not available and has been replaced
See ‘/tmp/workdir/rPBK/new/rPBK.Rcheck/00install.out’ for details.
-
checking installed package size ... NOTE
installed size is 98.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 96.5Mb
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘rstantools’
All declared Imports should be used.
-
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
rrr
- Version: 1.0.0
- GitHub: https://github.com/chrisaddy/rrr
- Source code: https://github.com/cran/rrr
- Date/Publication: 2016-12-09 15:15:55
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "rrr") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘rrr-Ex.R’ failed
The error most likely occurred in:
Name: residuals
Title: Reduced-Rank Regression Residuals
Aliases: residuals
** Examples
data(tobacco)
...
galaxy <- as_data_frame(COMBO17)
galaxy <- select(galaxy, -starts_with("e."), -Nr, -UFS:-IFD)
galaxy <- na.omit(galaxy)
galaxy_x <- select(galaxy, -Rmag:-chi2red)
galaxy_y <- select(galaxy, Rmag:chi2red)
residuals(galaxy_x, galaxy_y, type = "cva", rank = 2, k = 0.001)
Error in +.gg(e1, item) :
'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
Calls: residuals ... cva_residual_plot -> +.gg -> add_list_to_ggmatrix -> +.gg
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘rrr.Rmd’ using rmarkdown
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘Rcpp’
All declared Imports should be used.
RSDA
- Version: 3.2.4
- GitHub: NA
- Source code: https://github.com/cran/RSDA
- Date/Publication: 2025-06-02 19:10:02 UTC
- Number of recursive dependencies: 161
Run revdepcheck::cloud_details(, "RSDA") for more info
Newly broken
- checking whether package ‘RSDA’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RSDA’
See ‘/tmp/workdir/RSDA/new/RSDA.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 4.6Mb
RTIGER
- Version: 2.1.0
- GitHub: NA
- Source code: https://github.com/cran/RTIGER
- Date/Publication: 2023-03-29 09:20:02 UTC
- Number of recursive dependencies: 158
Run revdepcheck::cloud_details(, "RTIGER") for more info
Newly broken
- checking whether package ‘RTIGER’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RTIGER’
See ‘/tmp/workdir/RTIGER/new/RTIGER.Rcheck/00install.out’ for details.
RVA
- Version: 0.0.5
- GitHub: https://github.com/THERMOSTATS/RVA
- Source code: https://github.com/cran/RVA
- Date/Publication: 2021-11-01 21:40:02 UTC
- Number of recursive dependencies: 208
Run revdepcheck::cloud_details(, "RVA") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘RVA.Rmd’ using rmarkdown
In both
-
checking installed package size ... NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
data 7.5Mb
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘XML’
All declared Imports should be used.
RVenn
- Version: 1.1.0
- GitHub: NA
- Source code: https://github.com/cran/RVenn
- Date/Publication: 2019-07-18 21:40:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "RVenn") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RVenn)
>
> test_check("RVenn")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('test_ggvenn.R:16:3'): ggvenn: slices ──────────────────────────────
class(ggvenn(v1, slice = c(2, 4))) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test_ggvenn.R:17:3'): ggvenn: slices ──────────────────────────────
class(ggvenn(v1, slice = c("A", "B", "C"))) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 31 ]
Error: Test failures
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
Rwtss
- Version: 0.9.2
- GitHub: https://github.com/e-sensing/Rwtss
- Source code: https://github.com/cran/Rwtss
- Date/Publication: 2022-04-25 08:50:05 UTC
- Number of recursive dependencies: 113
Run revdepcheck::cloud_details(, "Rwtss") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Rwtss)
Rwtss - R interface to Web Time Series Service.
Loaded Rwtss v0.9.2.
See ?Rwtss for help, citation("Rwtss") for use in publication.
See demo(package = "Rwtss") for examples.
...
Backtrace:
▆
- ├─vcr::use_cassette(...) at test_wtss.R:53:5
- │ └─cassette$call_block(...)
- └─testthat::expect_true(unname(summary(g)[1, 2]) == "gg") at test_wtss.R:60:9
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ]
Error: Test failures
Execution halted
Ran 14/14 deferred expressions
```
In both
- checking Rd files ... NOTE
checkRd: (-1) wtss_to_ts.Rd:31: Lost braces; missing escapes or markup?
31 | This period can be either {"month", "week", "day"},
| ^
checkRd: (-1) wtss_to_ts.Rd:32: Lost braces; missing escapes or markup?
32 | {"months", "weeks", "days"} or
| ^
checkRd: (-1) wtss_to_ts.Rd:33: Lost braces; missing escapes or markup?
33 | {12, 52, 365}. This function creates a new time series with the required
| ^
saros
- Version: 1.5.4
- GitHub: https://github.com/NIFU-NO/saros
- Source code: https://github.com/cran/saros
- Date/Publication: 2025-06-04 12:10:06 UTC
- Number of recursive dependencies: 117
Run revdepcheck::cloud_details(, "saros") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘saros-Ex.R’ failed
The error most likely occurred in:
Name: girafe
Title: Pull global plotting settings before displaying plot
Aliases: girafe
** Examples
plot <- makeme(data = ex_survey, dep = b_1)
...
24. │ └─base::lapply(...)
25. │ └─ggplot2 (local) FUN(X[[i]], ...)
26. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
27. │ └─self$draw_panel(...)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[1L]
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(saros)
>
> testthat::test_check("saros")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 224 ]
...
- │ └─self$draw_panel(...)
- └─base::.handleSimpleError(...)
- └─rlang (local) h(simpleError(msg, call))
- └─handlers[1L]
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 224 ]
Error: Test failures
Execution halted
```
scatterpie
- Version: 0.2.4
- GitHub: NA
- Source code: https://github.com/cran/scatterpie
- Date/Publication: 2024-08-28 17:20:02 UTC
- Number of recursive dependencies: 64
Run revdepcheck::cloud_details(, "scatterpie") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.layer_scatterpie:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
scCustomize
- Version: 3.0.1
- GitHub: https://github.com/samuel-marsh/scCustomize
- Source code: https://github.com/cran/scCustomize
- Date/Publication: 2024-12-18 18:40:02 UTC
- Number of recursive dependencies: 275
Run revdepcheck::cloud_details(, "scCustomize") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘scCustomize-Ex.R’ failed
The error most likely occurred in:
Name: Plot_Median_Genes
Title: Plot Median Genes per Cell per Sample
Aliases: Plot_Median_Genes
** Examples
library(Seurat)
...
1. └─scCustomize::Plot_Median_Genes(...)
2. └─scCustomize::theme_ggprism_mod()
3. ├─... %+replace% ...
4. │ └─ggplot2::is_theme(e1)
5. │ └─S7::S7_inherits(x, class_theme)
6. └─ggprism::theme_prism(...)
7. └─parent %+replace% t
8. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
9. └─rlang::abort(...)
Execution halted
```
schtools
- Version: 0.4.1
- GitHub: https://github.com/SchlossLab/schtools
- Source code: https://github.com/cran/schtools
- Date/Publication: 2023-08-21 14:50:06 UTC
- Number of recursive dependencies: 116
Run revdepcheck::cloud_details(, "schtools") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:76-94 [italic-genus]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! object must be an , not a S3
Backtrace:
...
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
object must be an , not a S3
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
```
scoringutils
- Version: 2.1.0
- GitHub: https://github.com/epiforecasts/scoringutils
- Source code: https://github.com/cran/scoringutils
- Date/Publication: 2025-03-03 18:10:02 UTC
- Number of recursive dependencies: 82
Run revdepcheck::cloud_details(, "scoringutils") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘scoringutils-Ex.R’ failed
The error most likely occurred in:
Name: get_pit_histogram.forecast_quantile
Title: Probability integral transformation histogram
Aliases: get_pit_histogram.forecast_quantile
get_pit_histogram.forecast_sample get_pit_histogram
get_pit_histogram.default
Keywords: scoring
...
library("ggplot2")
result <- get_pit_histogram(example_sample_continuous, by = "model")
ggplot(result, aes(x = mid, y = density)) +
+ geom_col() +
+ facet_wrap(. ~ model) +
+ labs(x = "Quantile", "Density")
Error: object is invalid:
- every label must be named.
Execution halted
```
scplot
- Version: 0.5.1
- GitHub: NA
- Source code: https://github.com/cran/scplot
- Date/Publication: 2025-03-01 13:10:03 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "scplot") for more info
Newly broken
- checking whether package ‘scplot’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/scplot/new/scplot.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘scplot’ ...
** package ‘scplot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the scplot package.
Please report the issue to the authors.
Error in `class<-`(`*tmp*`, value = "list") :
cannot coerce type 'object' to vector of type 'list'
Error: unable to load R code in package ‘scplot’
Execution halted
ERROR: lazy loading failed for package ‘scplot’
* removing ‘/tmp/workdir/scplot/new/scplot.Rcheck/scplot’
CRAN
* installing *source* package ‘scplot’ ...
** package ‘scplot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scplot)
SCpubr
- Version: 2.0.2
- GitHub: https://github.com/enblacar/SCpubr
- Source code: https://github.com/cran/SCpubr
- Date/Publication: 2023-10-11 09:50:02 UTC
- Number of recursive dependencies: 299
Run revdepcheck::cloud_details(, "SCpubr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # nolint start
> library(testthat)
> library(SCpubr)
── SCpubr 2.0.2 ────────────────────────────────────────────────────────────────
...
- e1:
- e2:
Backtrace:
▆
1. └─SCpubr::do_FeaturePlot(sample, features = "EPC1") at test-utils.R:775:5
2. └─S7:::Ops.S7_object(p, ggplot2::ggtitle(""))
[ FAIL 55 | WARN 16 | SKIP 391 | PASS 25 ]
Error: Test failures
Execution halted
```
scRNAstat
- Version: 0.1.1.1
- GitHub: NA
- Source code: https://github.com/cran/scRNAstat
- Date/Publication: 2025-03-08 08:58:55 UTC
- Number of recursive dependencies: 154
Run revdepcheck::cloud_details(, "scRNAstat") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘scRNAstat-Ex.R’ failed
The error most likely occurred in:
Name: basic_filter
Title: basic_filter
Aliases: basic_filter
** Examples
basic_filter(AJ064_small_sce)
...
Please report the issue at https://github.com/satijalab/seurat/issues.
Warning: aes_string() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the Seurat package.
Please report the issue at https://github.com/satijalab/seurat/issues.
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
In both
-
checking whether package ‘scRNAstat’ can be installed ... WARNING
Found the following significant warnings:
Warning: namespace ‘colorspace’ is not available and has been replaced
See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details.
-
checking installed package size ... NOTE
installed size is 8.1Mb
sub-directories of 1Mb or more:
data 8.0Mb
scrutiny
- Version: 0.5.0
- GitHub: https://github.com/lhdjung/scrutiny
- Source code: https://github.com/cran/scrutiny
- Date/Publication: 2024-09-22 08:10:02 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "scrutiny") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘scrutiny-Ex.R’ failed
The error most likely occurred in:
Name: debit_plot
Title: Visualize DEBIT results
Aliases: debit_plot
** Examples
Run debit_plot() on the output
of debit_map():
pigs3 %>%
+ debit_map() %>%
+ debit_plot()
Error: object properties are invalid:
- @colour cannot be a decimal number, but could be an integer.
- @arrow.fill cannot be a decimal number, but could be an integer.
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
>
> library(testthat)
> library(scrutiny)
>
> test_check("scrutiny")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 523 ]
...
- ├─ggplot2::theme(...)
- │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
- │ └─base::mget(args, envir = env)
- └─ggplot2::element_line(seq(0, 0.5, 0.1))
- └─S7::new_object(...)
- └─S7::validate(object, recursive = !parent_validated)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 523 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘consistency-tests-in-depth.Rmd’ using rmarkdown
--- finished re-building ‘consistency-tests-in-depth.Rmd’
--- re-building ‘consistency-tests-simple.Rmd’ using rmarkdown
--- finished re-building ‘consistency-tests-simple.Rmd’
--- re-building ‘debit.Rmd’ using rmarkdown
Quitting from debit.Rmd:116-124 [unnamed-chunk-8]
...
- @arrow.fill cannot be a decimal number, but could be an integer.
--- failed re-building ‘debit.Rmd’
--- re-building ‘devtools.Rmd’ using rmarkdown
--- finished re-building ‘devtools.Rmd’
--- re-building ‘duplicates.Rmd’ using rmarkdown
--- finished re-building ‘duplicates.Rmd’
--- re-building ‘grim.Rmd’ using rmarkdown
```
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘janitor’
scUtils
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/scUtils
- Date/Publication: 2020-06-25 16:20:02 UTC
- Number of recursive dependencies: 48
Run revdepcheck::cloud_details(, "scUtils") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(scUtils)
>
> test_check("scUtils")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plots.R:59:3'): all kinds of colnames are allowed ────────────
p$labels not equal to list(y = "Dim2", x = "Dim1", colour = "expression").
Attributes: < names for target but not for current >
Attributes: < Length mismatch: comparison on first 0 components >
Length mismatch: comparison on first 2 components
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
SCVA
- Version: 1.3.1
- GitHub: NA
- Source code: https://github.com/cran/SCVA
- Date/Publication: 2020-01-09 22:50:10 UTC
- Number of recursive dependencies: 77
Run revdepcheck::cloud_details(, "SCVA") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘SCVA-Ex.R’ failed
The error most likely occurred in:
Name: graphly
Title: Interactive plot of single-case data
Aliases: graphly
Keywords: Single-case design Graph
** Examples
data(AB)
graphly(design = "AB", data = AB)
Warning: qplot() was deprecated in ggplot2 3.4.0.
ℹ The deprecated feature was likely used in the SCVA package.
Please report the issue to the authors.
Error in pm[[2]] : subscript out of bounds
Calls: graphly -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
SDMtune
- Version: 1.3.2
- GitHub: https://github.com/ConsBiol-unibern/SDMtune
- Source code: https://github.com/cran/SDMtune
- Date/Publication: 2024-12-16 16:50:06 UTC
- Number of recursive dependencies: 122
Run revdepcheck::cloud_details(, "SDMtune") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SDMtune)
_____ ____ __ ___ __
/ ___/ / __ \ / |/ // /_ __ __ ____ ___
\__ \ / / / // /|_/ // __// / / // __ \ / _ \
/ // // // / / // / / // // / / // /
...
expected is a character vector ('Var2')
── Failure ('test-plotCor.R:6:3'): The plot has the correct labels and text size ──
p$labels$y (actual) not equal to "Var1" (expected).
actual is NULL
expected is a character vector ('Var1')
[ FAIL 2 | WARN 0 | SKIP 55 | PASS 315 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
R 3.0Mb
libs 1.0Mb
seAMLess
- Version: 0.1.1
- GitHub: https://github.com/eonurk/seAMLess
- Source code: https://github.com/cran/seAMLess
- Date/Publication: 2024-11-11 12:50:02 UTC
- Number of recursive dependencies: 49
Run revdepcheck::cloud_details(, "seAMLess") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘seAMLess-Ex.R’ failed
The error most likely occurred in:
Name: ternaryPlot
Title: Given the immune compositions (ICs) of bulk-RNA samples, this
function creates a ternary plot similar to ALOT tube from EuroFlow
analysis and Figure 1E of our paper.
Aliases: ternaryPlot
** Examples
...
library(seAMLess)
data(minRes)
ternaryPlot(minRes)
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: object properties are invalid:
- @lineend must be or , not S3
Execution halted
```
sedproxy
- Version: 0.7.5
- GitHub: https://github.com/EarthSystemDiagnostics/sedproxy
- Source code: https://github.com/cran/sedproxy
- Date/Publication: 2023-02-26 10:50:02 UTC
- Number of recursive dependencies: 68
Run revdepcheck::cloud_details(, "sedproxy") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sedproxy)
>
> test_check("sedproxy")
[ FAIL 1 | WARN 13 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ClimToProxyClim.R:332:3'): example from paper works ──────────
class(p) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 1 | WARN 13 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
```
see
- Version: 0.11.0
- GitHub: https://github.com/easystats/see
- Source code: https://github.com/cran/see
- Date/Publication: 2025-03-11 16:20:02 UTC
- Number of recursive dependencies: 245
Run revdepcheck::cloud_details(, "see") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘see-Ex.R’ failed
The error most likely occurred in:
Name: geom_from_list
Title: Create ggplot2 geom(s) from a list
Aliases: geom_from_list geoms_from_list
** Examples
Don't show:
...
14. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ └─base::withCallingHandlers(...)
17. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
18. └─l$map_statistic(d, plot)
19. └─ggplot2 (local) map_statistic(..., self = self)
20. └─ggplot2:::check_nondata_cols(...)
21. └─cli::cli_abort(c(problem, issues, i = hint), call = NULL)
22. └─rlang::abort(...)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # graphics engine changed in R 4.4, and so snapshots generated on
> # previous R version won't work
> if (getRversion() >= "4.4.0") {
- library(testthat)
- library(see)
- test_check("see")
...
- │ └─ggplot2 (local) draw_group(..., self = self)
- └─base::.handleSimpleError(...)
- └─rlang (local) h(simpleError(msg, call))
- └─handlers[1L]
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 1 | WARN 11 | SKIP 23 | PASS 34 ]
Error: Test failures
Execution halted
```
seedreg
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/seedreg
- Date/Publication: 2022-07-07 21:20:02 UTC
- Number of recursive dependencies: 124
Run revdepcheck::cloud_details(, "seedreg") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘seedreg-Ex.R’ failed
The error most likely occurred in:
Name: lineplot
Title: Graph: line chart
Aliases: lineplot
** Examples
data("substrate")
...
19. │ └─ggplot2 (local) setup_params(...)
20. │ └─ggplot2:::make_summary_fun(...)
21. │ └─rlang::as_function(fun.data)
22. │ └─base::get(x, envir = env, mode = "function")
23. └─base::.handleSimpleError(...)
24. └─rlang (local) h(simpleError(msg, call))
25. └─handlers[1L]
26. └─cli::cli_abort(...)
27. └─rlang::abort(...)
Execution halted
```
seqHMM
- Version: 2.0.0
- GitHub: https://github.com/helske/seqHMM
- Source code: https://github.com/cran/seqHMM
- Date/Publication: 2025-05-17 00:10:02 UTC
- Number of recursive dependencies: 125
Run revdepcheck::cloud_details(, "seqHMM") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘seqHMM-Ex.R’ failed
The error most likely occurred in:
Name: stacked_sequence_plot
Title: Stacked Sequence Plots of Multichannel Sequences and/or Most
Probable Paths from Hidden Markov Models
Aliases: stacked_sequence_plot
** Examples
...
+ plots = "both",
+ type = "d",
+ legend_position = c("right", "right", "right", "none")
+ )
library("ggplot2")
p & theme(plot.margin = unit(c(1, 1, 0, 2), "mm"))
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
In both
-
checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
--- re-building ‘seqHMM.Rnw’ using knitr
Quitting from seqHMM.Rnw:417-429 [graphicalillustrations2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! Can't find method for generic &(e1, e2):
- e1:
- e2:
...
Can't find method for generic &(e1, e2):
- e1:
- e2:
--- failed re-building ‘seqHMM_visualization.Rnw’
SUMMARY: processing the following files failed:
‘seqHMM.Rnw’ ‘seqHMM_algorithms.Rnw’ ‘seqHMM_visualization.Rnw’
Error: Vignette re-building failed.
Execution halted
```
-
checking installed package size ... NOTE
installed size is 41.6Mb
sub-directories of 1Mb or more:
R 1.5Mb
data 1.5Mb
libs 37.5Mb
Seurat
- Version: 5.3.0
- GitHub: https://github.com/satijalab/seurat
- Source code: https://github.com/cran/Seurat
- Date/Publication: 2025-04-23 22:10:02 UTC
- Number of recursive dependencies: 278
Run revdepcheck::cloud_details(, "Seurat") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘Seurat-Ex.R’ failed
The error most likely occurred in:
Name: CombinePlots
Title: Combine ggplot2-based plots into a single plot
Aliases: CombinePlots
** Examples
data("pbmc_small")
...
+ split.by = 'group'
+ )
Warning: The slot argument of FetchData() is deprecated as of SeuratObject 5.0.0.
ℹ Please use the layer argument instead.
ℹ The deprecated feature was likely used in the Seurat package.
Please report the issue at https://github.com/satijalab/seurat/issues.
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 16.7Mb
sub-directories of 1Mb or more:
R 3.5Mb
help 1.5Mb
libs 11.4Mb
-
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘Signac’
sglg
- Version: 0.2.2
- GitHub: NA
- Source code: https://github.com/cran/sglg
- Date/Publication: 2022-09-04 03:50:01 UTC
- Number of recursive dependencies: 92
Run revdepcheck::cloud_details(, "sglg") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘sglg-Ex.R’ failed
The error most likely occurred in:
Name: deviance_residuals
Title: Deviance Residuals for a Generalized Log-gamma Regression Model
Aliases: deviance_residuals
** Examples
Example 1
n <- 300
error <- rglg(n,0,1,1)
y <- 0.5 + error
fit <- glg(y~1,data=as.data.frame(y))
deviance_residuals(fit)
Error in pm[[2]] : subscript out of bounds
Calls: deviance_residuals ... dots2plots -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
sgsR
- Version: 1.4.5
- GitHub: https://github.com/tgoodbody/sgsR
- Source code: https://github.com/cran/sgsR
- Date/Publication: 2024-03-03 15:10:02 UTC
- Number of recursive dependencies: 119
Run revdepcheck::cloud_details(, "sgsR") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...expectedis a character vector ('zq90')
── Failure ('test-utils-plot.R:19:3'): scatter messages ────────────────────────
o1$labels$x (actual) not equal to "pzabove2" (expected`).
actual is NULL
expected is a character vector ('pzabove2')
[ FAIL 2 | WARN 115 | SKIP 19 | PASS 508 ]
Error: Test failures
Execution halted
```
shadowtext
- Version: 0.1.4
- GitHub: https://github.com/GuangchuangYu/shadowtext
- Source code: https://github.com/cran/shadowtext
- Date/Publication: 2024-07-18 07:00:01 UTC
- Number of recursive dependencies: 47
Run revdepcheck::cloud_details(, "shadowtext") for more info
Newly broken
- checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: ‘S7’
SHAPforxgboost
- Version: 0.1.3
- GitHub: https://github.com/liuyanguu/SHAPforxgboost
- Source code: https://github.com/cran/SHAPforxgboost
- Date/Publication: 2023-05-29 17:20:07 UTC
- Number of recursive dependencies: 113
Run revdepcheck::cloud_details(, "SHAPforxgboost") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘SHAPforxgboost-Ex.R’ failed
The error most likely occurred in:
Name: shap.plot.force_plot
Title: Make the SHAP force plot
Aliases: shap.plot.force_plot
** Examples
...
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the SHAPforxgboost package.
Please report the issue at
https://github.com/liuyanguu/SHAPforxgboost/issues.
Data has N = 150 | zoom in length is 50 at location 90.
Error in upgradeUnit.default(x) : Not a unit object
Calls: ... is.unit -> convertUnit -> upgradeUnit -> upgradeUnit.default
Execution halted
```
shiny
- Version: 1.10.0
- GitHub: https://github.com/rstudio/shiny
- Source code: https://github.com/cran/shiny
- Date/Publication: 2024-12-14 00:10:02 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "shiny") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(shiny)
>
> test_check("shiny")
[ FAIL 96 | WARN 1 | SKIP 19 | PASS 1529 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
...
m5$panels has length 0, not length 1.
── Failure ('test-plot-coordmap.R:464:3'): ggplot coordmap maintains discrete limits ──
m5$panels[[1]]$domain$discrete_limits (actual) not equal to list(x = c("e", "f")) (expected).
actual is NULL
expected is a list
[ FAIL 96 | WARN 1 | SKIP 19 | PASS 1529 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 16.6Mb
sub-directories of 1Mb or more:
R 3.5Mb
help 1.7Mb
www 10.4Mb
shinyMixR
- Version: 0.5.0
- GitHub: NA
- Source code: https://github.com/cran/shinyMixR
- Date/Publication: 2024-11-14 16:10:03 UTC
- Number of recursive dependencies: 199
Run revdepcheck::cloud_details(, "shinyMixR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # see https://github.com/rstudio/shinytest2/issues/351
> options(chromote.timeout = 120)
>
> library(testthat)
> library(shinyMixR)
Loading required package: shiny
Loading required package: ggplot2
...
Backtrace:
▆
- ├─base::suppressWarnings(gof_plot(res, ptype = "all", type = "xpose")) at test-gof_plot.R:10:3
- │ └─base::withCallingHandlers(...)
- └─shinyMixR::gof_plot(res, ptype = "all", type = "xpose")
- └─S7:::Ops.S7_object(...)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 28 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘getting_started.Rmd’ using rmarkdown
Quitting from getting_started.Rmd:234-237 [unnamed-chunk-18]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! Can't find method for generic &(e1, e2):
- e1:
- e2:
...
Can't find method for generic &(e1, e2):
- e1:
- e2:
--- failed re-building ‘getting_started.Rmd’
SUMMARY: processing the following file failed:
‘getting_started.Rmd’
Error: Vignette re-building failed.
Execution halted
```
shinyMobile
- Version: 2.0.1
- GitHub: https://github.com/RinteRface/shinyMobile
- Source code: https://github.com/cran/shinyMobile
- Date/Publication: 2024-10-04 17:30:02 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "shinyMobile") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘shinyMobile-Ex.R’ failed
The error most likely occurred in:
Name: f7SplitLayout
Title: Framework7 split layout
Aliases: f7SplitLayout
** Examples
library(shiny)
...
fruits <- data.frame(
+ name = c("Apples", "Oranges", "Bananas", "Berries"),
+ value = c(44, 55, 67, 83)
+ )
thematic_shiny(font = "auto")
Error in get(x, envir = ns, inherits = FALSE) :
object 'ggplot_build.ggplot' not found
Calls: thematic_shiny ... thematic_on -> ggplot_build_set -> getFromNamespace -> get
Execution halted
```
simmr
- Version: 0.5.1.217
- GitHub: https://github.com/andrewcparnell/simmr
- Source code: https://github.com/cran/simmr
- Date/Publication: 2024-10-16 15:10:02 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "simmr") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘advanced_plotting.Rmd’ using rmarkdown
SimNPH
- Version: 0.5.7
- GitHub: https://github.com/SimNPH/SimNPH
- Source code: https://github.com/cran/SimNPH
- Date/Publication: 2025-04-08 10:30:02 UTC
- Number of recursive dependencies: 130
Run revdepcheck::cloud_details(, "SimNPH") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SimNPH)
Loading required package: SimDesign
Loading required package: survival
>
> test_check("SimNPH")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 403 ]
...
- ├─withr::with_package(...) at test-shhr_gg.R:5:3
- │ └─base::force(code)
- ├─withr::with_package(...) at test-shhr_gg.R:6:5
- │ └─base::force(code)
- └─SimNPH::shhr_gg(A, B) at test-shhr_gg.R:7:7
- └─S7:::Ops.S7_object(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 403 ]
Error: Test failures
Execution halted
```
simplecolors
- Version: 0.1.2
- GitHub: https://github.com/rjake/simplecolors
- Source code: https://github.com/cran/simplecolors
- Date/Publication: 2023-08-31 04:40:07 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "simplecolors") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(simplecolors)
>
> test_check("simplecolors")
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 22 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
y[1]: "gg"
── Failure ('test-show_colors.R:5:3'): show_colors retuns gglot ────────────────
is(x) not equal to "gg".
1/1 mismatches
x[1]: "ggplot2::ggplot"
y[1]: "gg"
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 22 ]
Error: Test failures
Execution halted
```
sjPlot
- Version: 2.8.17
- GitHub: https://github.com/strengejacke/sjPlot
- Source code: https://github.com/cran/sjPlot
- Date/Publication: 2024-11-29 11:20:03 UTC
- Number of recursive dependencies: 193
Run revdepcheck::cloud_details(, "sjPlot") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘blackwhitefigures.Rmd’ using rmarkdown
smallsets
- Version: 2.0.0
- GitHub: https://github.com/lydialucchesi/smallsets
- Source code: https://github.com/cran/smallsets
- Date/Publication: 2023-12-05 00:00:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "smallsets") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘smallsets-Ex.R’ failed
The error most likely occurred in:
Name: Smallset_Timeline
Title: Smallset Timeline
Aliases: Smallset_Timeline
** Examples
set.seed(145)
Smallset_Timeline(
+ data = s_data,
+ code = system.file("s_data_preprocess.R", package = "smallsets")
+ )
Error: Can't find property @hjust
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
9. │ └─ggplot2:::fix_theme_deprecations(elements)
- │ ├─base::
$<-(*tmp*, "hjust", value = <dbl>)
- │ └─ggplot2:::
$<-.ggplot2::element(*tmp*, "hjust", value = <dbl>)
- │ └─S7::
props<-(*tmp*, value = [[<-(S7::props(x), i, value))
- │ └─S7::
prop<-(*tmp*, name, check = FALSE, value = value[[name]])
- └─S7 (local)
<fn>(...)
[ FAIL 15 | WARN 0 | SKIP 0 | PASS 16 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘smallsets.Rmd’ using rmarkdown
Quitting from smallsets.Rmd:35-42 [timeline1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error:
! Can't find property @hjust
Backtrace:
...
Error: processing vignette 'smallsets.Rmd' failed with diagnostics:
Can't find property @hjust
--- failed re-building ‘smallsets.Rmd’
SUMMARY: processing the following file failed:
‘smallsets.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘gurobi’
smer
- Version: 0.0.1
- GitHub: https://github.com/lcrawlab/sme
- Source code: https://github.com/cran/smer
- Date/Publication: 2025-01-16 15:50:01 UTC
- Number of recursive dependencies: 110
Run revdepcheck::cloud_details(, "smer") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘smer.Rmd’ using rmarkdown
In both
-
checking installed package size ... NOTE
installed size is 45.7Mb
sub-directories of 1Mb or more:
libs 42.7Mb
-
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
SOMbrero
- Version: 1.4-2
- GitHub: https://github.com/tuxette/SOMbrero
- Source code: https://github.com/cran/SOMbrero
- Date/Publication: 2024-01-25 22:10:10 UTC
- Number of recursive dependencies: 112
Run revdepcheck::cloud_details(, "SOMbrero") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("SOMbrero")
Loading required package: igraph
Attaching package: 'igraph'
The following object is masked from 'package:testthat':
...
── Failure ('test-missing.R:58:3'): All 'add' plots are produced for inputs with missing entries ──
class(plot(nsom, what = "add", type = "barplot", variable = add4)) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-missing.R:61:3'): All 'add' plots are produced for inputs with missing entries ──
class(plot(nsom, what = "add", type = "boxplot", variable = add4)) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 58 ]
Error: Test failures
Execution halted
```
SoupX
- Version: 1.6.2
- GitHub: https://github.com/constantAmateur/SoupX
- Source code: https://github.com/cran/SoupX
- Date/Publication: 2022-11-01 14:00:03 UTC
- Number of recursive dependencies: 199
Run revdepcheck::cloud_details(, "SoupX") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘pbmcTutorial.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 3.9Mb
doc 1.0Mb
spacejamr
- Version: 0.2.1
- GitHub: https://github.com/dscolby/spacejamr
- Source code: https://github.com/cran/spacejamr
- Date/Publication: 2022-04-01 20:10:02 UTC
- Number of recursive dependencies: 133
Run revdepcheck::cloud_details(, "spacejamr") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(spacejamr)
>
> test_check("spacejamr")
Density Mean Degree Mean Closeness Mean Betweenness Largest Component Size
pl 0 0 NaN 0 1
apl 0 0 NaN 0 1
...
[1] "ggraph" - "gg" [2]
[2] "ggplot2::ggplot" -
[3] "ggplot" -
[4] "ggplot2::gg" -
[5] "S7_object" -
[6] "gg" - "ggplot" [3]
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 20 ]
Error: Test failures
Execution halted
```
spatialwarnings
- Version: 3.1.0
- GitHub: https://github.com/spatial-ews/spatialwarnings
- Source code: https://github.com/cran/spatialwarnings
- Date/Publication: 2024-09-06 14:50:02 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "spatialwarnings") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> library(spatialwarnings)
Loading required package: future
This is spatialwarnings 3.1.0
Use plan(multisession) to set up parallel processing
> if ( require("testthat") ) {
- test_check("spatialwarnings")
...
{
...
} is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 6 | WARN 17 | SKIP 2 | PASS 161 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 8.3Mb
sub-directories of 1Mb or more:
data 2.0Mb
libs 5.8Mb
spectralR
- Version: 0.1.3
- GitHub: https://github.com/olehprylutskyi/spectralR
- Source code: https://github.com/cran/spectralR
- Date/Publication: 2023-08-24 09:20:02 UTC
- Number of recursive dependencies: 117
Run revdepcheck::cloud_details(, "spectralR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("spectralR")
- }
test_get.pixel.data.R......... 1 tests [0;32mOK[0m [0;34m0.1s[0m
test_prepare.vector.data.R.... 1 tests [0;32mOK[0m
...
test_prepare.vector.data.R.... 8 tests [0;32mOK[0m
test_prepare.vector.data.R.... 9 tests [0;32mOK[0m
test_prepare.vector.data.R.... 10 tests [0;32mOK[0m
test_prepare.vector.data.R.... 11 tests [0;32mOK[0m
test_prepare.vector.data.R.... 12 tests [0;32mOK[0m [0;36m79ms[0m
test_spectral.curves.plot.R... 1 tests [0;32mOK[0m Joining with by = join_by(variable)
Error in if (msg != "") { : the condition has length > 1
Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun
Execution halted
```
spinifex
- Version: 0.3.8
- GitHub: https://github.com/nspyrison/spinifex
- Source code: https://github.com/cran/spinifex
- Date/Publication: 2025-01-08 22:10:02 UTC
- Number of recursive dependencies: 151
Run revdepcheck::cloud_details(, "spinifex") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(spinifex)
Loading required package: tourr
--------------------------------------------------------
spinifex --- version 0.3.8
Please share bugs, suggestions, and feature requests at:
...
- │ └─base::withCallingHandlers(...)
- └─spinifex::play_tour_path(tour_path = tpath, data = dat_std, angle = 1)
- └─spinifex (local) render_type(frames = tour_df, ...)
- ├─plotly::ggplotly(p = gg, tooltip = "tooltip")
- └─plotly:::ggplotly.ggplot(p = gg, tooltip = "tooltip")
- └─plotly::gg2list(...)
[ FAIL 9 | WARN 85 | SKIP 0 | PASS 72 ]
Error: Test failures
Execution halted
```
sport
- Version: 0.2.1
- GitHub: https://github.com/gogonzo/sport
- Source code: https://github.com/cran/sport
- Date/Publication: 2024-01-08 23:50:02 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "sport") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("sport")
Loading required package: sport
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_output.R:30:3'): Scale is labelled 'r' ───────────────────────
p$labels$y not identical to "r".
target is NULL, current is character
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 7504 marked UTF-8 strings
sportyR
- Version: 2.2.2
- GitHub: https://github.com/sportsdataverse/sportyR
- Source code: https://github.com/cran/sportyR
- Date/Publication: 2024-02-15 10:10:02 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "sportyR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sportyR)
>
> test_check("sportyR")
[ FAIL 28 | WARN 0 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
expected: "gg"
── Failure ('test-plots-and-features-volleyball.R:18:5'): geom_volleyball() can successfully transform coordinates ──
class(fivb_court)[1] (actual) not equal to "gg" (expected).
actual: "ggplot2::ggplot"
expected: "gg"
[ FAIL 28 | WARN 0 | SKIP 0 | PASS 101 ]
Error: Test failures
Execution halted
```
SPUTNIK
- Version: 1.4.2
- GitHub: https://github.com/paoloinglese/SPUTNIK
- Source code: https://github.com/cran/SPUTNIK
- Date/Publication: 2024-04-16 14:30:05 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "SPUTNIK") for more info
Newly broken
- checking whether package ‘SPUTNIK’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘SPUTNIK’
See ‘/tmp/workdir/SPUTNIK/new/SPUTNIK.Rcheck/00install.out’ for details.
SqueakR
- Version: 1.3.0
- GitHub: https://github.com/osimon81/SqueakR
- Source code: https://github.com/cran/SqueakR
- Date/Publication: 2022-06-28 09:20:04 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "SqueakR") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘SqueakR.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
doc 8.2Mb
ssd4mosaic
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/ssd4mosaic
- Date/Publication: 2025-03-11 14:40:02 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "ssd4mosaic") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
plot_cens_ci$layers has length 11, not length 7.
── Error ('test-fct_options_plots.R:8:3'): Uncensored data can be coloured by group ──
Error inorder(p$layers[[1]]$data$group)`: argument 1 is not a vector
Backtrace:
▆
- └─base::order(p$layers[[1]]$data$group) at test-fct_options_plots.R:8:3
[ FAIL 3 | WARN 1 | SKIP 1 | PASS 66 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 1 marked UTF-8 string
sssc
- Version: 1.0.0
- GitHub: NA
- Source code: https://github.com/cran/sssc
- Date/Publication: 2018-06-15 11:22:54 UTC
- Number of recursive dependencies: 31
Run revdepcheck::cloud_details(, "sssc") for more info
Newly broken
- checking whether package ‘sssc’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘sssc’
See ‘/tmp/workdir/sssc/new/sssc.Rcheck/00install.out’ for details.
starvz
- Version: 0.8.2
- GitHub: https://github.com/schnorr/starvz
- Source code: https://github.com/cran/starvz
- Date/Publication: 2024-09-08 19:00:02 UTC
- Number of recursive dependencies: 101
Run revdepcheck::cloud_details(, "starvz") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(starvz)
>
> test_check("starvz")
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 1 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
...
• On CRAN (2): 'test_lu.R:10:3', 'test_qr.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_lu.R:8:3'): starvz_plot works ────────────────────────────────
class(pl) not equal to c("patchwork", "gg", "ggplot").
Lengths differ: 6 is not 3
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 1 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 3.9Mb
states
- Version: 0.3.2
- GitHub: https://github.com/andybega/states
- Source code: https://github.com/cran/states
- Date/Publication: 2023-09-05 12:20:02 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "states") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("states")
Attaching package: 'states'
The following object is masked from 'package:testthat':
...
── Failure ('test-plot-missing.R:72:3'): plot_missing accepts all input options ──
plot_missing(...) has type 'object', not 'list'.
── Failure ('test-plot-missing.R:77:3'): plot_missing accepts all input options ──
plot_missing(...) has type 'object', not 'list'.
── Failure ('test-plot-missing.R:82:3'): plot_missing accepts all input options ──
plot_missing(...) has type 'object', not 'list'.
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 106 ]
Error: Test failures
Execution halted
```
statgenGWAS
- Version: 1.0.11
- GitHub: https://github.com/Biometris/statgenGWAS
- Source code: https://github.com/cran/statgenGWAS
- Date/Publication: 2025-03-31 13:30:06 UTC
- Number of recursive dependencies: 70
Run revdepcheck::cloud_details(, "statgenGWAS") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("statgenGWAS")
- }
test_GWAS.R................... 0 tests
test_GWAS.R................... 0 tests
...
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the statgenGWAS package.
Please report the issue at https://github.com/Biometris/statgenGWAS/issues.
2: In grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
for '← 2@3' in 'mbcsToSbcs': <- substituted for ← (U+2190)
3: aes_() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes()
ℹ The deprecated feature was likely used in the statgenGWAS package.
Please report the issue at https://github.com/Biometris/statgenGWAS/issues.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 15.2Mb
sub-directories of 1Mb or more:
data 7.0Mb
libs 7.2Mb
statgenGxE
- Version: 1.0.9
- GitHub: https://github.com/Biometris/statgenGxE
- Source code: https://github.com/cran/statgenGxE
- Date/Publication: 2024-09-18 07:10:03 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "statgenGxE") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(statgenGxE)
>
> test_check("statgenGxE")
[ FAIL 8 | WARN 3 | SKIP 17 | PASS 440 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
...
── Failure ('test-plots.R:354:3'): Option colorGenoBy in scatterFit plot functions correctly ──
p1$labels$colour not equal to "family".
target is NULL, current is character
── Failure ('test-plots.R:405:3'): VarCov plot gives correct output types ──────
geoms not equal to "GeomTile".
names for target but not for current
[ FAIL 8 | WARN 3 | SKIP 17 | PASS 440 ]
Error: Test failures
Execution halted
```
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘asreml’
statgenHTP
- Version: 1.0.8
- GitHub: https://github.com/Biometris/statgenHTP
- Source code: https://github.com/cran/statgenHTP
- Date/Publication: 2025-04-29 10:30:02 UTC
- Number of recursive dependencies: 131
Run revdepcheck::cloud_details(, "statgenHTP") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("statgenHTP")
- }
test_TP.R..................... 0 tests
test_TP.R..................... 0 tests
...
test_detectSerieOut.R......... 4 tests [0;32mOK[0m
test_detectSerieOut.R......... 5 tests [0;32mOK[0m
test_detectSerieOut.R......... 6 tests [0;32mOK[0m
test_detectSerieOut.R......... 7 tests [0;32mOK[0m
test_detectSerieOut.R......... 8 tests [0;32mOK[0m
test_detectSerieOut.R......... 9 tests [0;32mOK[0m Error in inherits(w, class) && grepl(pattern, w$message, ...) :
'length = 2' in coercion to 'logical(1)'
Calls: ... eval -> expect_warning -> fun -> sapply -> lapply -> FUN
In addition: There were 22 warnings (use warnings() to see them)
Execution halted
```
In both
-
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘asreml’
-
checking installed package size ... NOTE
installed size is 8.0Mb
sub-directories of 1Mb or more:
data 6.5Mb
statgenIBD
- Version: 1.0.8
- GitHub: https://github.com/Biometris/statgenIBD
- Source code: https://github.com/cran/statgenIBD
- Date/Publication: 2025-02-05 12:00:02 UTC
- Number of recursive dependencies: 58
Run revdepcheck::cloud_details(, "statgenIBD") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("statgenIBD")
- }
test_IBDprob.R................ 0 tests
test_IBDprob.R................ 0 tests
...
test_IBDprob.R................ 6 tests [0;32mOK[0m
test_IBDprob.R................ 7 tests [0;32mOK[0m
test_IBDprob.R................ 8 tests [0;32mOK[0m
test_IBDprob.R................ 9 tests [0;32mOK[0m
test_IBDprob.R................ 9 tests [0;32mOK[0m
test_IBDprob.R................ 10 tests [0;32mOK[0m
test_IBDprob.R................ 11 tests [0;32mOK[0m
test_IBDprob.R................ 12 tests [0;32mOK[0m Error in if (msg != "") { : the condition has length > 1
Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 9.7Mb
sub-directories of 1Mb or more:
extdata 2.4Mb
libs 6.4Mb
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘statgenGWAS’
All declared Imports should be used.
statgenSTA
- Version: 1.0.14
- GitHub: https://github.com/Biometris/statgenSTA
- Source code: https://github.com/cran/statgenSTA
- Date/Publication: 2024-10-14 07:40:02 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "statgenSTA") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(statgenSTA)
>
> test_check("statgenSTA")
[ FAIL 1 | WARN 2 | SKIP 6 | PASS 777 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
...
• {asreml} is not installed (3): 'test-STA.R:43:3', 'test-STA.R:57:3',
'test-STA.R:113:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-layoutPlot.R:104:3'): plot works correctly if no trial is defined ──
plot(testTD2, plotType = "layout") produced warnings.
[ FAIL 1 | WARN 2 | SKIP 6 | PASS 777 ]
Error: Test failures
Execution halted
```
In both
-
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘asreml’
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘mapproj’
All declared Imports should be used.
stRoke
- Version: 24.10.1
- GitHub: https://github.com/agdamsbo/stRoke
- Source code: https://github.com/cran/stRoke
- Date/Publication: 2024-10-25 06:50:01 UTC
- Number of recursive dependencies: 130
Run revdepcheck::cloud_details(, "stRoke") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
── Failure ('test-index_plot.R:2:3'): index_plot() works! ──────────────────────
index_plot(stRoke::score[score$event == "A", ]) has type 'object', not 'list'.
── Failure ('test-index_plot.R:5:3'): index_plot() works! ──────────────────────
index_plot(stRoke::score[score$event == "A", ], sub_plot = "_per") has type 'object', not 'list'.
── Failure ('test-index_plot.R:17:3'): index_plot() works! ─────────────────────
index_plot(stRoke::score, sub_plot = "_per", facet.by = "event") has type 'object', not 'list'.
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 47 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 705 marked UTF-8 strings
Superpower
- Version: 0.2.3
- GitHub: https://github.com/arcaldwell49/Superpower
- Source code: https://github.com/cran/Superpower
- Date/Publication: 2025-05-15 07:20:02 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "Superpower") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Superpower)
>
>
> test_check("Superpower")
[1] "condition_one" "sad_1"
...
y[1]: "gg"
── Failure ('test-morey.R:109:3'): No error messages ftest ─────────────────────
class(test)[1] not equal to "gg".
1/1 mismatches
x[1]: "ggplot2::ggplot"
y[1]: "gg"
[ FAIL 2 | WARN 18 | SKIP 13 | PASS 398 ]
Error: Test failures
Execution halted
```
survHE
- Version: 2.0.4
- GitHub: https://github.com/giabaio/survHE
- Source code: https://github.com/cran/survHE
- Date/Publication: 2025-05-15 08:20:02 UTC
- Number of recursive dependencies: 127
Run revdepcheck::cloud_details(, "survHE") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
── Failure ('test-make.surv.R:20:3'): output plots don't throw an error and return ggplot2 list ──
psa.plot(p.mle3) has type 'object', not 'list'.
── Failure ('test-make.surv.R:22:3'): output plots don't throw an error and return ggplot2 list ──
plot(mle, add.km = TRUE) has type 'object', not 'list'.
── Failure ('test-make.surv.R:23:3'): output plots don't throw an error and return ggplot2 list ──
plot(mle, add.km = TRUE, sim = 10) has type 'object', not 'list'.
[ FAIL 7 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
```
synthpop
- Version: 1.9-1.1
- GitHub: NA
- Source code: https://github.com/cran/synthpop
- Date/Publication: 2025-06-03 05:53:06 UTC
- Number of recursive dependencies: 63
Run revdepcheck::cloud_details(, "synthpop") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘synthpop-Ex.R’ failed
The error most likely occurred in:
Name: compare.synds
Title: Compare univariate distributions of synthesised and observed
data
Aliases: compare.synds compare.data.frame compare.list
print.compare.synds
** Examples
...
synthetic data provided as a 'synds' object
compare(s1, ods, vars = "ls")
Calculations done for ls
Comparing percentages observed with synthetic
Error in S7::prop(x, "meta")[[i]] : subscript out of bounds
Calls: ... print.compare.synds -> print -> [[ -> [[.ggplot2::gg
Execution halted
```
In both
-
checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
--- re-building ‘disclosure.Rnw’ using Sweave
New version of synthpop (1.9-0) with disclosure functions
see disclosure.pdf for details and NEWS file for other changes
Find out more at https://www.synthpop.org.uk/
Error: processing vignette 'disclosure.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'disclosure.tex' failed.
LaTeX errors:
! LaTeX Error: File `authblk.sty' not found.
...
l.6 \usepackage
{framed}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building 'utility.Rnw'
SUMMARY: processing the following files failed:
‘disclosure.Rnw’ ‘inference.Rnw’ ‘utility.Rnw’
Error: Vignette re-building failed.
Execution halted
```
tabledown
- Version: 1.0.0
- GitHub: https://github.com/masiraji/tabledown
- Source code: https://github.com/cran/tabledown
- Date/Publication: 2024-05-02 13:40:03 UTC
- Number of recursive dependencies: 163
Run revdepcheck::cloud_details(, "tabledown") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘tabledown-Ex.R’ failed
The error most likely occurred in:
Name: ggreliability_plotly
Title: A Function for Creating Item Response Theory based reliability
plot based on plotly.
Aliases: ggreliability_plotly
** Examples
...
Iteration: 17, Log-Lik: -5351.363, Max-Change: 0.00011
Iteration: 18, Log-Lik: -5351.363, Max-Change: 0.00054
Iteration: 19, Log-Lik: -5351.363, Max-Change: 0.00012
Iteration: 20, Log-Lik: -5351.363, Max-Change: 0.00035
Iteration: 21, Log-Lik: -5351.363, Max-Change: 0.00010
plot <- ggreliability_plotly(data, model)
Error in pm[[2]] : subscript out of bounds
Calls: ggreliability_plotly -> -> ggplotly.ggplot -> gg2list
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 551 marked UTF-8 strings
tastypie
- Version: 0.1.1
- GitHub: https://github.com/PaoloDalena/tastypie
- Source code: https://github.com/cran/tastypie
- Date/Publication: 2023-09-06 18:00:06 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "tastypie") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tastypie)
$$ $$ $$
||||||
| * * * |
| * * * |
| * * * |
...
- S7_object
- gg
Backtrace:
▆
- └─testthat::expect_match(class(b), "gg") at test-templates.R:37:3
- └─testthat:::expect_match_(...)
[ FAIL 45 | WARN 38 | SKIP 0 | PASS 74 ]
Error: Test failures
Execution halted
```
TcGSA
- Version: 0.12.10
- GitHub: https://github.com/sistm/TcGSA
- Source code: https://github.com/cran/TcGSA
- Date/Publication: 2022-02-28 21:40:02 UTC
- Number of recursive dependencies: 131
Run revdepcheck::cloud_details(, "TcGSA") for more info
Newly broken
-
checking Rd cross-references ... WARNING
```
Missing link or links in Rd file 'plot1GS.Rd':
‘+.gg’
Missing link or links in Rd file 'plotFit.GS.Rd':
‘+.gg’
Missing link or links in Rd file 'plotMultipleGS.Rd':
‘+.gg’
Missing link or links in Rd file 'plotPat.1GS.Rd':
‘+.gg’
Missing link or links in Rd file 'plotSelect.GS.Rd':
‘+.gg’
See section 'Cross-references' in the 'Writing R Extensions' manual.
```
TCIU
- Version: 1.2.7
- GitHub: https://github.com/SOCR/TCIU
- Source code: https://github.com/cran/TCIU
- Date/Publication: 2024-09-15 02:40:02 UTC
- Number of recursive dependencies: 165
Run revdepcheck::cloud_details(, "TCIU") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘TCIU-Ex.R’ failed
The error most likely occurred in:
Name: fmri_image
Title: interactive graph object of the fMRI image
Aliases: fmri_image
** Examples
fmri_generate = fmri_simulate_func(dim_data = c(64, 64, 40), mask = mask)
fmri_image(fmri_generate$fmri_data, option='manually', voxel_location = c(40,22,33), time = 4)
Error in pm[[2]] : subscript out of bounds
Calls: fmri_image ... add_trace -> add_data -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown
--- finished re-building ‘tciu-LT-kimesurface.Rmd’
--- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown
Quitting from tciu-fMRI-analytics.Rmd:183-185 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in pm[[2]]:
...
Error: processing vignette 'tciu-fMRI-analytics.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘tciu-fMRI-analytics.Rmd’
SUMMARY: processing the following file failed:
‘tciu-fMRI-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 14.1Mb
sub-directories of 1Mb or more:
data 1.5Mb
doc 12.0Mb
teal.widgets
- Version: 0.4.3
- GitHub: https://github.com/insightsengineering/teal.widgets
- Source code: https://github.com/cran/teal.widgets
- Date/Publication: 2025-01-31 17:50:01 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "teal.widgets") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> pkg_name <- "teal.widgets"
> library(pkg_name, character.only = TRUE)
> testthat::test_check(pkg_name)
[ FAIL 3 | WARN 0 | SKIP 21 | PASS 203 ]
══ Skipped tests (21) ══════════════════════════════════════════════════════════
• testing depth 3 is below current testing specification 5 (21):
...
── Failure ('test-ggplot2_args.R:267:5'): parse_ggplot2_args, when resolve_ggplot2_args priorotizes input in the order: user_plot, user_default, teal.ggplot2_args and module_plot ──
deparse(parsed_all$theme, 500) not identical to "ggplot2::theme(axis.text = structure(list(), class = c(\"element_blank\", \"element\")))".
1/1 mismatches
x[1]: "ggplot2::theme(axis.text = )"
y[1]: "ggplot2::theme(axis.text = structure(list(), class = c(\"element_blank\",
y[1]: \"element\")))"
[ FAIL 3 | WARN 0 | SKIP 21 | PASS 203 ]
Error: Test failures
Execution halted
```
TestGardener
- Version: 3.3.5
- GitHub: NA
- Source code: https://github.com/cran/TestGardener
- Date/Publication: 2024-09-18 17:40:02 UTC
- Number of recursive dependencies: 122
Run revdepcheck::cloud_details(, "TestGardener") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘TestGardener-Ex.R’ failed
The error most likely occurred in:
Name: Ffuns_plot
Title: Plot a selection of fit criterion F functions and their first
two derivatives.
Aliases: Ffuns_plot
** Examples
...
short SweSAT multiple choice test with 24 items and 1000 examinees
chcemat <- Quant_13B_problem_dataList$chcemat
index <- Quant_13B_problem_parmList$index
SfdList <- Quant_13B_problem_parmList$SfdList
plotindex <- 1:3
indfine <- seq(0,100,len=101)
Ffuns_plot(indfine, index, SfdList, chcemat, plotindex)
Error: object is invalid:
- every label must be named.
Execution halted
```
thematic
- Version: 0.1.6
- GitHub: https://github.com/rstudio/thematic
- Source code: https://github.com/cran/thematic
- Date/Publication: 2024-07-29 15:50:02 UTC
- Number of recursive dependencies: 102
Run revdepcheck::cloud_details(, "thematic") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘thematic-Ex.R’ failed
The error most likely occurred in:
Name: auto_config
Title: Configure auto theming behavior
Aliases: auto_config auto_config_set auto_config_get
** Examples
old_config <- auto_config_set(auto_config("black", "white"))
thematic_with_theme(
+ thematic_theme(), {
+ plot(1:10, 1:10)
+ })
Error in get(x, envir = ns, inherits = FALSE) :
object 'ggplot_build.ggplot' not found
Calls: thematic_with_theme ... -> ggplot_build_set -> getFromNamespace -> get
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(thematic)
>
> test_check("thematic")
[ FAIL 17 | WARN 0 | SKIP 5 | PASS 13 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
...
Backtrace:
▆
1. └─thematic::thematic_on("black", "white", "green") at test-state.R:54:3
2. └─thematic:::ggplot_build_set()
3. └─utils::getFromNamespace("ggplot_build.ggplot", "ggplot2")
4. └─base::get(x, envir = ns, inherits = FALSE)
[ FAIL 17 | WARN 0 | SKIP 5 | PASS 13 ]
Error: Test failures
Execution halted
```
tidycat
- Version: 0.1.2
- GitHub: https://github.com/guyabel/tidycat
- Source code: https://github.com/cran/tidycat
- Date/Publication: 2021-08-02 04:20:01 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "tidycat") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘tidycat-Ex.R’ failed
The error most likely occurred in:
Name: tidy_categorical
Title: Expand broom::tidy() Outputs for Categorical Parameter Estimates
Aliases: tidy_categorical
** Examples
strip ordering in factors (currently ordered factor not supported)
...
ggplot(data = d0,
+ mapping = aes(x = level, colour = reference,
+ y = estimate, ymin = conf.low, ymax = conf.high)) +
+ facet_row(facets = vars(variable), scales = "free_x", space = "free") +
+ geom_hline(yintercept = 0, linetype = "dashed") +
+ geom_pointrange() +
+ theme(axis.text.x = element_text(angle = 45, hjust = 1))
Error in space$x : $ operator is invalid for atomic vectors
Calls: ... -> draw_panels -> -> init_gtable
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘tidyr’
All declared Imports should be used.
tidyCDISC
- Version: 0.2.1
- GitHub: https://github.com/Biogen-Inc/tidyCDISC
- Source code: https://github.com/cran/tidyCDISC
- Date/Publication: 2023-03-16 14:20:02 UTC
- Number of recursive dependencies: 131
Run revdepcheck::cloud_details(, "tidyCDISC") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidyCDISC)
> library(shinyjs)
Attaching package: 'shinyjs'
...
6. ├─plotly::config(...)
7. │ └─plotly:::modify_list(p$x$config, args)
8. │ ├─utils::modifyList(x %||% list(), y %||% list(), ...)
9. │ │ └─base::stopifnot(is.list(x), is.list(val))
10. │ └─x %||% list()
11. └─plotly::layout(...)
[ FAIL 1 | WARN 1 | SKIP 15 | PASS 91 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
R 1.0Mb
data 2.0Mb
doc 1.8Mb
tidydr
- Version: 0.0.5
- GitHub: https://github.com/YuLab-SMU/tidydr
- Source code: https://github.com/cran/tidydr
- Date/Publication: 2023-03-08 09:20:02 UTC
- Number of recursive dependencies: 75
Run revdepcheck::cloud_details(, "tidydr") for more info
Newly broken
- checking whether package ‘tidydr’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘tidydr’ ...
** package ‘tidydr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'len0_null' not found
Error: unable to load R code in package ‘tidydr’
Execution halted
ERROR: lazy loading failed for package ‘tidydr’
* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’
CRAN
* installing *source* package ‘tidydr’ ...
** package ‘tidydr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidydr)
tidyEdSurvey
- Version: 0.1.3
- GitHub: NA
- Source code: https://github.com/cran/tidyEdSurvey
- Date/Publication: 2024-05-14 20:20:03 UTC
- Number of recursive dependencies: 110
Run revdepcheck::cloud_details(, "tidyEdSurvey") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(EdSurvey)
Loading required package: car
Loading required package: carData
Loading required package: lfactors
lfactors v1.0.4
...
── Failure ('test-ggplot.R:13:3'): density plot with facets and PVs ────────────
class(p) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-ggplot.R:21:3'): boxplot with facets and PVs ─────────────────
class(p) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 10 ]
Error: Test failures
Execution halted
```
tidypaleo
- Version: 0.1.3
- GitHub: https://github.com/paleolimbot/tidypaleo
- Source code: https://github.com/cran/tidypaleo
- Date/Publication: 2023-01-18 08:20:03 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "tidypaleo") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.rotate_facet_label_spec:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.sequential_layer_facet_spec:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
tidyposterior
- Version: 1.0.1
- GitHub: https://github.com/tidymodels/tidyposterior
- Source code: https://github.com/cran/tidyposterior
- Date/Publication: 2023-10-11 18:50:02 UTC
- Number of recursive dependencies: 176
Run revdepcheck::cloud_details(, "tidyposterior") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidyposterior)
>
> test_check("tidyposterior")
Attaching package: 'rsample'
...
expected: ".upper"
── Failure ('test_perf_mod.R:288:3'): workflow sets ────────────────────────────
as.character(p_rope$labels$colour) (actual) not equal to "workflow" (expected).
actual:
expected: "workflow"
[ FAIL 12 | WARN 32 | SKIP 5 | PASS 116 ]
Error: Test failures
Execution halted
```
tidysdm
- Version: 1.0.0
- GitHub: https://github.com/EvolEcolGroup/tidysdm
- Source code: https://github.com/cran/tidysdm
- Date/Publication: 2025-03-05 17:40:02 UTC
- Number of recursive dependencies: 191
Run revdepcheck::cloud_details(, "tidysdm") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘tidysdm-Ex.R’ failed
The error most likely occurred in:
Name: plot_pres_vs_bg
Title: Plot presences vs background
Aliases: plot_pres_vs_bg
** Examples
data("bradypus", package = "maxnet")
...
+ ),
+ ref = "presence"
+ )) %>%
+ select(-ecoreg)
bradypus_tb %>% plot_pres_vs_bg(presence)
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown
timetk
- Version: 2.9.0
- GitHub: https://github.com/business-science/timetk
- Source code: https://github.com/cran/timetk
- Date/Publication: 2023-10-31 22:30:02 UTC
- Number of recursive dependencies: 204
Run revdepcheck::cloud_details(, "timetk") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
7. └─timetk:::plot_time_series.grouped_df(...)
8. ├─timetk::plot_time_series(...)
9. └─timetk:::plot_time_series.data.frame(...)
- ├─plotly::ggplotly(g, dynamicTicks = TRUE)
- └─plotly:::ggplotly.ggplot(g, dynamicTicks = TRUE)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 406 ]
Error: Test failures
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 2750 marked UTF-8 strings
tinyarray
- Version: 2.4.3
- GitHub: https://github.com/xjsun1221/tinyarray
- Source code: https://github.com/cran/tinyarray
- Date/Publication: 2025-03-05 13:20:02 UTC
- Number of recursive dependencies: 248
Run revdepcheck::cloud_details(, "tinyarray") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘tinyarray-Ex.R’ failed
The error most likely occurred in:
Name: box_surv
Title: box_surv
Aliases: box_surv
** Examples
if(requireNamespace("ggpubr",quietly = TRUE)) {
...
Please use theme() to construct themes.
Warning: aes_string() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes().
ℹ See also vignette("ggplot2-in-packages") for more information.
ℹ The deprecated feature was likely used in the tinyarray package.
Please report the issue at https://github.com/xjsun1221/tinyarray/issues.
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
tmt
- Version: 0.3.4-0
- GitHub: https://github.com/jansteinfeld/tmt
- Source code: https://github.com/cran/tmt
- Date/Publication: 2024-05-03 15:00:02 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "tmt") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tmt)
- tmt 0.3.4-0 (2024-05-02)
test_check("tmt")
The following items are specified in the dataset, but not in the submitted mstdesign: ii1
The following items are specified in the mstdesign, but not in the dataset: i1
...
[1] 1 - 11 == -10
Backtrace:
▆
- └─testthat::expect_that(length(p), equals(11)) at test-tmt_gmc.R:34:5
- └─testthat (local) condition(object)
- └─testthat::expect_equal(x, expected, ..., expected.label = label)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 362 ]
Error: Test failures
Execution halted
```
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘dexterMST’
TPMplt
- Version: 0.1.6
- GitHub: https://github.com/CubicZebra/TPMplt
- Source code: https://github.com/cran/TPMplt
- Date/Publication: 2024-10-01 13:20:05 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "TPMplt") for more info
Newly broken
- checking whether package ‘TPMplt’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘TPMplt’
See ‘/tmp/workdir/TPMplt/new/TPMplt.Rcheck/00install.out’ for details.
track2KBA
- Version: 1.1.2
- GitHub: https://github.com/BirdLifeInternational/track2kba
- Source code: https://github.com/cran/track2KBA
- Date/Publication: 2024-07-01 10:40:07 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "track2KBA") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("track2KBA")
- }
test_estSpaceUse.R............ 0 tests
Attaching package: 'lubridate'
...
with cells of 0.411 square km
test_mapKDE.R................. 1 tests [0;32mOK[0m
test_mapKDE.R................. 2 tests [0;32mOK[0m Error in if (msg != "") { : the condition has length > 1
Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun
In addition: Warning message:
In Matching::ks.boot(WI, BW, alternative = "two.sided", nboots = iterations) :
For publication quality p-values it is recommended that 'nboots'
be set equal to at least 500 (preferably 1000)
Execution halted
```
tradeoffaucdim
- Version: 0.1.0
- GitHub: https://github.com/luisgarcez11/tradeoffaucdim
- Source code: https://github.com/cran/tradeoffaucdim
- Date/Publication: 2025-05-02 09:40:02 UTC
- Number of recursive dependencies: 141
Run revdepcheck::cloud_details(, "tradeoffaucdim") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-05-plot_curve.R:11:3'): output ───────────────────────────────
plot_curve(obj4)$plot_performance has type 'object', not 'list'.
── Failure ('test-05-plot_curve.R:12:3'): output ───────────────────────────────
plot_curve(obj4)$plot_time has type 'object', not 'list'.
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 38 ]
Error: Test failures
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘speedglm’
All declared Imports should be used.
trajmsm
- Version: 0.1.3
- GitHub: https://github.com/awamaeva/R-package-trajmsm
- Source code: https://github.com/cran/trajmsm
- Date/Publication: 2024-10-05 19:00:02 UTC
- Number of recursive dependencies: 34
Run revdepcheck::cloud_details(, "trajmsm") for more info
Newly broken
- checking whether package ‘trajmsm’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘trajmsm’
See ‘/tmp/workdir/trajmsm/new/trajmsm.Rcheck/00install.out’ for details.
TransProR
- Version: 1.0.3
- GitHub: https://github.com/SSSYDYSSS/TransProR
- Source code: https://github.com/cran/TransProR
- Date/Publication: 2025-02-18 09:00:05 UTC
- Number of recursive dependencies: 209
Run revdepcheck::cloud_details(, "TransProR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘TransProR-Ex.R’ failed
The error most likely occurred in:
Name: highlight_by_node
Title: Highlight Nodes in a Phylogenetic Tree with Custom Fill Colors
and Transparency
Aliases: highlight_by_node
** Examples
...
p2 <- highlight_by_node(
+ p2_plot,
+ nodes,
+ fill_colors,
+ alpha_values,
+ extend_values
+ )
Error in ggtree_object + layer : non-numeric argument to binary operator
Calls: highlight_by_node
Execution halted
```
trelliscopejs
- Version: 0.2.6
- GitHub: https://github.com/hafen/trelliscopejs
- Source code: https://github.com/cran/trelliscopejs
- Date/Publication: 2021-02-01 08:00:02 UTC
- Number of recursive dependencies: 102
Run revdepcheck::cloud_details(, "trelliscopejs") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(trelliscopejs)
>
> test_check("trelliscopejs")
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
4. └─base::lapply(...)
5. └─trelliscopejs (local) FUN(X[[i]], ...)
6. ├─base::do.call(plotly::ggplotly, c(list(p = q), plotly_args))
7. ├─plotly (local) <fn>(p = <ggplt2::>)
8. └─plotly:::ggplotly.ggplot(p = <ggplt2::>)
9. └─plotly::gg2list(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
```
-
checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.facet_trelliscope:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
tricolore
- Version: 1.2.4
- GitHub: https://github.com/jschoeley/tricolore
- Source code: https://github.com/cran/tricolore
- Date/Publication: 2024-05-15 15:00:02 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "tricolore") for more info
Newly broken
- checking whether package ‘tricolore’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/00install.out’ for details.
Newly fixed
- checking data for non-ASCII characters ... NOTE
Note: found 2 marked UTF-8 strings
Installation
Devel
* installing *source* package ‘tricolore’ ...
** package ‘tricolore’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: <ggplot2::element_line> object properties are invalid:
- @lineend must be <character> or <NULL>, not S3<arrow>
Execution halted
ERROR: lazy loading failed for package ‘tricolore’
* removing ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/tricolore’
CRAN
* installing *source* package ‘tricolore’ ...
** package ‘tricolore’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tricolore)
triplot
- Version: 1.3.0
- GitHub: https://github.com/ModelOriented/triplot
- Source code: https://github.com/cran/triplot
- Date/Publication: 2020-07-13 17:00:03 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "triplot") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘triplot-Ex.R’ failed
The error most likely occurred in:
Name: plot.triplot
Title: Plots triplot
Aliases: plot.triplot
** Examples
library(DALEX)
...
explainer_apartments <- explain(model = apartments_num_lm_model,
+ data = apartments_num[,-1],
+ y = apartments_num[, 1],
+ verbose = FALSE)
apartments_tri <- calculate_triplot(x = explainer_apartments,
+ new_observation = apartments_num_new_observation[-1])
plot(apartments_tri)
Error: object properties are invalid:
- @labels must be , not
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(triplot)
>
> test_check("triplot")
Welcome to DALEX (version: 2.4.3).
Find examples and detailed introduction at: http://ema.drwhy.ai/
Additional features will be available after installation of: ggpubr.
...
- └─ggplot2::update_ggplot(object = object, plot = plot, ...)
- ├─S7::S7_dispatch()
- └─ggplot2 (local)
method(update_ggplot, list(ggplot2::theme, ggplot2::ggplot))(...)
- └─S7::set_props(plot, theme = add_theme(plot@theme, object))
- └─S7::
props<-(*tmp*, value = list(...))
- └─S7::validate(object)
[ FAIL 2 | WARN 3 | SKIP 0 | PASS 74 ]
Error: Test failures
Execution halted
```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
triptych
- Version: 0.1.3
- GitHub: https://github.com/aijordan/triptych
- Source code: https://github.com/cran/triptych
- Date/Publication: 2024-06-13 15:50:02 UTC
- Number of recursive dependencies: 61
Run revdepcheck::cloud_details(, "triptych") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘triptych-Ex.R’ failed
The error most likely occurred in:
Name: plot.triptych
Title: Plot methods for the triptych classes
Aliases: plot.triptych autoplot.triptych plot.triptych_murphy
autoplot.triptych_murphy plot.triptych_reliability
autoplot.triptych_reliability plot.triptych_roc autoplot.triptych_roc
plot.triptych_mcbdsc autoplot.triptych_mcbdsc
...
** Examples
data(ex_binary, package = "triptych")
tr <- triptych(ex_binary)
dplyr::slice(tr, 1, 3, 6, 9) |> autoplot()
Error: Can't find method for generic &(e1, e2):
- e1:
- e2:
Execution halted
```
tsnet
- Version: 0.1.0
- GitHub: https://github.com/bsiepe/tsnet
- Source code: https://github.com/cran/tsnet
- Date/Publication: 2024-02-28 11:30:02 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "tsnet") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
Chain 1:
[ FAIL 1 | WARN 16 | SKIP 0 | PASS 107 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-centrality.R:52:3'): plot_centrality returns expected output ──
result has type 'object', not 'list'.
[ FAIL 1 | WARN 16 | SKIP 0 | PASS 107 ]
Error: Test failures
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 159.7Mb
sub-directories of 1Mb or more:
libs 158.7Mb
-
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
ulrb
- Version: 0.1.6
- GitHub: https://github.com/pascoalf/ulrb
- Source code: https://github.com/cran/ulrb
- Date/Publication: 2025-04-07 09:50:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "ulrb") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Glossary.Rmd’ using rmarkdown
--- finished re-building ‘Glossary.Rmd’
--- re-building ‘eco-analysis.Rmd’ using rmarkdown
```
umiAnalyzer
- Version: 1.0.0
- GitHub: https://github.com/sfilges/umiAnalyzer
- Source code: https://github.com/cran/umiAnalyzer
- Date/Publication: 2021-11-25 08:40:02 UTC
- Number of recursive dependencies: 111
Run revdepcheck::cloud_details(, "umiAnalyzer") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘umiAnalyzer-Ex.R’ failed
The error most likely occurred in:
Name: AmpliconPlot
Title: Generate Amplicon plots
Aliases: AmpliconPlot
** Examples
library(umiAnalyzer)
...
ℹ Please use tidy evaluation idioms with aes()
ℹ The deprecated feature was likely used in the umiAnalyzer package.
Please report the issue at https://github.com/sfilges/umiAnalyzer/issues.
Warning: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the umiAnalyzer package.
Please report the issue at https://github.com/sfilges/umiAnalyzer/issues.
Error in pm[[2]] : subscript out of bounds
Calls: AmpliconPlot -> -> ggplotly.ggplot -> gg2list
Execution halted
```
UnalR
- Version: 1.0.0
- GitHub: https://github.com/estadisticaun/UnalR
- Source code: https://github.com/cran/UnalR
- Date/Publication: 2024-05-25 17:20:05 UTC
- Number of recursive dependencies: 167
Run revdepcheck::cloud_details(, "UnalR") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(UnalR)
>
> test_check("UnalR")
Starting 2 test processes
[ FAIL 1 | WARN 4 | SKIP 2 | PASS 73 ]
...
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-Plot_Boxplot.R:48:3', 'test-Tabla.R:40:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-Plot_Series.R:110:3'): Plot.Series() captura de algunos valores claves a retornar ──
output_PlotSeries has type 'object', not 'list'.
[ FAIL 1 | WARN 4 | SKIP 2 | PASS 73 ]
Error: Test failures
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 7.0Mb
sub-directories of 1Mb or more:
R 2.3Mb
data 2.0Mb
help 2.7Mb
-
checking data for non-ASCII characters ... NOTE
Note: found 312859 marked UTF-8 strings
usmap
- Version: 0.8.0
- GitHub: https://github.com/pdil/usmap
- Source code: https://github.com/cran/usmap
- Date/Publication: 2025-05-28 08:00:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "usmap") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘usmap-Ex.R’ failed
The error most likely occurred in:
Name: .east_north_central
Title: East North Central census division
Aliases: .east_north_central
Keywords: datasets
** Examples
plot_usmap(include = .east_north_central, labels = TRUE)
Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
package tibble not available: install first?
Calls: plot_usmap ... st_read -> st_read.character -> process_cpl_read_ogr
Execution halted
```
-
checking tests ... ERROR
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
• data/statepov.svg
• plot/arizona-county-map-with-labels-and-fill.svg
• plot/example-data-state-map-with-custom-linewidth.svg
• plot/new-england-state-map-with-labels-excluding-maine.svg
• plot/southeastern-states-map-with-labels.svg
• plot/state-map-with-labels.svg
• plot/state-map-with-major-rivers.svg
• plot/state-population-map-with-blue-outlines.svg
Error: Test failures
Execution halted
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘usmap1.Rmd’ using rmarkdown
Quitting from usmap1.Rmd:25-27 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in process_cpl_read_ogr():
! package tibble not available: install first?
Backtrace:
...
Error: processing vignette 'usmap3.Rmd' failed with diagnostics:
package tibble not available: install first?
--- failed re-building ‘usmap3.Rmd’
SUMMARY: processing the following files failed:
‘usmap1.Rmd’ ‘usmap2.Rmd’ ‘usmap3.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 17 marked UTF-8 strings
utile.visuals
- Version: 0.3.3
- GitHub: https://github.com/efinite/utile.visuals
- Source code: https://github.com/cran/utile.visuals
- Date/Publication: 2023-01-24 01:00:02 UTC
- Number of recursive dependencies: 37
Run revdepcheck::cloud_details(, "utile.visuals") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘utile.visuals-Ex.R’ failed
The error most likely occurred in:
Name: append_table
Title: Append a ggplot2 table to the bottom of a ggplot2 plot
Aliases: append_table
** Examples
library(survival)
...
+ aesthetics = c('colour', 'fill')) +
+ theme_basic()
Risk Table
tbl_risk <- ggrisktable(fit, c(0, 10, 20, 30, 40, 50)) +
+ coord_cartesian(c(0, 50)) +
+ scale_x_continuous(expand = c(0.02,0)) +
+ theme_risk()
Error: Can't find property @hjust
Execution halted
```
vaccine
- Version: 1.3.0
- GitHub: https://github.com/Avi-Kenny/vaccine
- Source code: https://github.com/cran/vaccine
- Date/Publication: 2025-01-07 18:00:01 UTC
- Number of recursive dependencies: 151
Run revdepcheck::cloud_details(, "vaccine") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(vaccine)
vaccine (version 1.3.0).
Type ?vaccine to get started.
>
> test_check("vaccine")
Loading required package: nnls
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-test-core-functions.R:320:3'): plot_ce ───────────────────────
class(p) (actual) not equal to c("gg", "ggplot") (expected`).
actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
expected[2:2]: "ggplot"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 165 ]
Error: Test failures
Execution halted
```
vaccineff
- Version: 1.0.0
- GitHub: https://github.com/epiverse-trace/vaccineff
- Source code: https://github.com/cran/vaccineff
- Date/Publication: 2024-11-29 09:30:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "vaccineff") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...expectedis a character vector ('coverage * max(dose_plot)')
── Failure ('test-utils_coverage.R:50:3'):plot_coverage: cumulative plot ────
plt$labels$y (actual) not identical to "coverage * max(dose_plot)" (expected`).
actual is NULL
expected is a character vector ('coverage * max(dose_plot)')
[ FAIL 2 | WARN 0 | SKIP 6 | PASS 100 ]
Error: Test failures
Execution halted
```
valr
- Version: 0.8.3
- GitHub: https://github.com/rnabioco/valr
- Source code: https://github.com/cran/valr
- Date/Publication: 2025-01-11 15:40:02 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "valr") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_glyph.r:13:3'): glyph labels are applied ─────────────────────
res$labels$label (actual) not equal to "id" (expected`).
actual is NULL
expected is a character vector ('id')
[ FAIL 1 | WARN 0 | SKIP 4 | PASS 479 ]
Error: Test failures
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 15.1Mb
sub-directories of 1Mb or more:
libs 13.9Mb
vanquish
- Version: 1.0.0
- GitHub: NA
- Source code: https://github.com/cran/vanquish
- Date/Publication: 2018-09-05 14:50:04 UTC
- Number of recursive dependencies: 31
Run revdepcheck::cloud_details(, "vanquish") for more info
Newly broken
- checking whether package ‘vanquish’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘vanquish’
See ‘/tmp/workdir/vanquish/new/vanquish.Rcheck/00install.out’ for details.
VarSelLCM
- Version: 2.1.3.1
- GitHub: NA
- Source code: https://github.com/cran/VarSelLCM
- Date/Publication: 2020-10-14 16:34:36 UTC
- Number of recursive dependencies: 60
Run revdepcheck::cloud_details(, "VarSelLCM") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘VarSelLCM.Rmd’ using rmarkdown
Quitting from VarSelLCM.Rmd:112-115 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in rep():
! attempt to replicate an object of type 'object'
Backtrace:
...
Error: processing vignette 'VarSelLCM.Rmd' failed with diagnostics:
attempt to replicate an object of type 'object'
--- failed re-building ‘VarSelLCM.Rmd’
SUMMARY: processing the following file failed:
‘VarSelLCM.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
- checking installed package size ... NOTE
installed size is 17.3Mb
sub-directories of 1Mb or more:
libs 16.5Mb
vDiveR
- Version: 2.0.1
- GitHub: NA
- Source code: https://github.com/cran/vDiveR
- Date/Publication: 2024-11-22 08:20:02 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "vDiveR") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘vDiveR-Ex.R’ failed
The error most likely occurred in:
Name: plot_conservation_level
Title: Conservation Levels Distribution Plot
Aliases: plot_conservation_level
** Examples
plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15)
...
32. │ └─base::lapply(...)
33. │ └─ggplot2 (local) FUN(X[[i]], ...)
34. │ └─ggplot2 (local) apply_fun(cur_data)
35. │ └─ggplot2 (local) fun(x, ...)
36. └─base::.handleSimpleError(...)
37. └─rlang (local) h(simpleError(msg, call))
38. └─handlers[1L]
39. └─cli::cli_abort(...)
40. └─rlang::abort(...)
Execution halted
```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘maps’
All declared Imports should be used.
vip
- Version: 0.4.1
- GitHub: https://github.com/koalaverse/vip
- Source code: https://github.com/cran/vip
- Date/Publication: 2023-08-21 09:20:02 UTC
- Number of recursive dependencies: 102
Run revdepcheck::cloud_details(, "vip") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
- home <- length(unclass(packageVersion("vip"))[[1L]]) == 4
- tinytest::test_package("vip", at_home = home)
- }
Attaching package: 'vip'
...
test_vip.R.................... 0 tests
test_vip.R.................... 1 tests [0;32mOK[0m
test_vip.R.................... 2 tests [0;32mOK[0m
test_vip.R.................... 3 tests [0;32mOK[0m [0;36m8ms[0m
----- FAILED[data]: test_pkg_nnet.R<47--50>
call| expect_identical(current = class(p), target = c("gg", "ggplot"))
diff| Lengths (2, 5) differ (string compare on first 2)
diff| 1 string mismatch
Error: 1 out of 25 tests failed
Execution halted
```
In both
-
checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'C50', 'caret', 'Cubist', 'earth', 'gbm', 'glmnet', 'h2o',
'lightgbm', 'mixOmics', 'mlr', 'mlr3', 'neuralnet', 'parsnip',
'partykit', 'pls', 'randomForest', 'ranger', 'RSNNS', 'sparklyr',
'tidymodels', 'workflows', 'xgboost'
-
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘randomForest’, ‘glmnet’, ‘C50’, ‘Cubist’, ‘caret’, ‘partykit’, ‘earth’, ‘gbm’, ‘h2o’, ‘sparklyr’, ‘ranger’, ‘xgboost’, ‘lightgbm’
visualpred
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/visualpred
- Date/Publication: 2024-11-07 12:30:02 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "visualpred") for more info
Newly broken
- checking whether package ‘visualpred’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘visualpred’
See ‘/tmp/workdir/visualpred/new/visualpred.Rcheck/00install.out’ for details.
vivaldi
- Version: 1.0.1
- GitHub: https://github.com/GreshamLab/vivaldi
- Source code: https://github.com/cran/vivaldi
- Date/Publication: 2023-03-21 20:10:02 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "vivaldi") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘vivaldi-Ex.R’ failed
The error most likely occurred in:
Name: snv_location
Title: snv_location
Aliases: snv_location
** Examples
Example 1:
...
6 m2 PB1 234 G A minor 0.010 0.990
7 m2 PB1 266 G A minor 0.022 0.978
8 m2 PB2 199 A G minor 0.043 0.957
9 m2 PB2 88 G A major 0.055 0.945
10 m2 PB2 180 C T minor 0.011 0.989
snv_location(df)
Error in pm[[2]] : subscript out of bounds
Calls: snv_location -> -> ggplotly.ggplot -> gg2list
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-snv_location.R:13:3'): expect output ─────────────────────────
Expected snv_location(df) to run without any errors.
i Actually got a with text:
subscript out of bounds
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 28 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘vignette.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 6.8Mb
sub-directories of 1Mb or more:
doc 5.4Mb
extdata 1.1Mb
voluModel
- Version: 0.2.2
- GitHub: https://github.com/hannahlowens/voluModel
- Source code: https://github.com/cran/voluModel
- Date/Publication: 2024-08-20 22:50:01 UTC
- Number of recursive dependencies: 130
Run revdepcheck::cloud_details(, "voluModel") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘voluModel-Ex.R’ failed
The error most likely occurred in:
Name: pointCompMap
Title: Comparative point mapping
Aliases: pointCompMap
Keywords: plotting
** Examples
...
9. └─ggplot2 (local) setup(..., self = self)
10. └─self$coord$setup_params(data)
11. └─ggplot2 (local) setup_params(..., self = self)
12. └─ggproto_parent(Coord, self)$setup_params(data)
13. └─ggplot2 (local) setup_params(..., self = self)
14. └─ggplot2:::parse_coord_expand(expand = self$expand %||% TRUE)
15. └─ggplot2:::check_logical(expand)
16. └─ggplot2:::stop_input_type(...)
17. └─rlang::abort(message, ..., call = call, arg = arg)
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘a_Introduction.Rmd’ using rmarkdown
Quitting from a_Introduction.Rmd:43-58 [show points]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a_Introduction.Rmd' failed with diagnostics:
expand must be a logical vector, not the number 0.05.
--- failed re-building ‘a_Introduction.Rmd’
--- re-building ‘b_RasterProcessing.Rmd’ using rmarkdown
```
vvshiny
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/vvshiny
- Date/Publication: 2023-07-19 15:30:02 UTC
- Number of recursive dependencies: 133
Run revdepcheck::cloud_details(, "vvshiny") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
- ├─vvshiny::ggplotly_with_legend(p, color = "grp", mapping_table = list(grp = "Group")) at test-ggplotly_with_legend.R:15:3
- │ ├─plotly::ggplotly(plot) %>% ...
- │ ├─plotly::ggplotly(plot)
- │ └─plotly:::ggplotly.ggplot(plot)
- │ └─plotly::gg2list(...)
- └─plotly::layout(...)
[ FAIL 3 | WARN 4 | SKIP 0 | PASS 58 ]
Error: Test failures
Execution halted
```
washi
- Version: 0.2.0
- GitHub: https://github.com/WA-Department-of-Agriculture/washi
- Source code: https://github.com/cran/washi
- Date/Publication: 2023-09-07 23:50:02 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "washi") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...expected: 0.0
── Failure ('test-theme.R:31:3'): washi_theme() works ──────────────────────────
length(theme$panel.grid.major.y) (actual) not equal to 0 (expected`).
`actual`: 1.0
expected: 0.0
[ FAIL 2 | WARN 4 | SKIP 5 | PASS 13 ]
Error: Test failures
Execution halted
```
wilson
- Version: 2.4.2
- GitHub: https://github.com/loosolab/wilson
- Source code: https://github.com/cran/wilson
- Date/Publication: 2021-04-19 09:40:02 UTC
- Number of recursive dependencies: 202
Run revdepcheck::cloud_details(, "wilson") for more info
Newly broken
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(wilson)
Attaching package: 'wilson'
The following object is masked from 'package:stats':
...
Backtrace:
▆
1. └─wilson::create_geneview(...) at test-interactive-plots.R:21:3
2. ├─plotly::ggplotly(...)
3. └─plotly:::ggplotly.ggplot(...)
4. └─plotly::gg2list(...)
[ FAIL 3 | WARN 11 | SKIP 1 | PASS 74 ]
Error: Test failures
Execution halted
```
windfarmGA
- Version: 4.0.0
- GitHub: https://github.com/YsoSirius/windfarmGA
- Source code: https://github.com/cran/windfarmGA
- Date/Publication: 2025-01-18 11:00:02 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "windfarmGA") for more info
Newly broken
-
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...expected`: TRUE
── Failure ('test_plots.R:126:3'): Test Plotting Functions ─────────────────────
class(windr_res)[1] == "gg" is not TRUE
actual: FALSE
expected: TRUE
[ FAIL 2 | WARN 0 | SKIP 2 | PASS 703 ]
Error: Test failures
Execution halted
```
wql
- Version: 1.0.2
- GitHub: https://github.com/jsta/wql
- Source code: https://github.com/cran/wql
- Date/Publication: 2025-01-23 10:10:02 UTC
- Number of recursive dependencies: 52
Run revdepcheck::cloud_details(, "wql") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘wql-Ex.R’ failed
The error most likely occurred in:
Name: eofNum
Title: Plot EOF percent variance
Aliases: eofNum
Keywords: Graphics ts
** Examples
Create an annual time series data matrix from sfbay chlorophyll data
Average over each year
chla1 <- aggregate(sfbayChla, 1, mean, na.rm = TRUE)
chla1 <- chla1[, 1:12] # remove stations with missing years
eofNum(chla1)
Error: object is invalid:
- every label must be named.
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘wql-package.Rmd’ using rmarkdown
xaringanthemer
- Version: 0.4.3
- GitHub: https://github.com/gadenbuie/xaringanthemer
- Source code: https://github.com/cran/xaringanthemer
- Date/Publication: 2024-09-15 14:00:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "xaringanthemer") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘ggplot2-themes.Rmd’ using rmarkdown
xpose
- Version: 0.4.19
- GitHub: https://github.com/UUPharmacometrics/xpose
- Source code: https://github.com/cran/xpose
- Date/Publication: 2025-01-07 20:00:02 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "xpose") for more info
Newly broken
- checking whether package ‘xpose’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/xpose/new/xpose.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘xpose’ ...
** package ‘xpose’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Error in get("print.ggplot", envir = asNamespace("ggplot2")) :
object 'print.ggplot' not found
Warning: namespace ‘xpose’ is not available and has been replaced
by .GlobalEnv when processing object ‘xpdb_ex_pk’
...
Warning: namespace ‘xpose’ is not available and has been replaced
by .GlobalEnv when processing object ‘xpdb_ex_pk’
** inst
** byte-compile and prepare package for lazy loading
Error in get("print.ggplot", envir = asNamespace("ggplot2")) :
object 'print.ggplot' not found
Error: unable to load R code in package ‘xpose’
Execution halted
ERROR: lazy loading failed for package ‘xpose’
* removing ‘/tmp/workdir/xpose/new/xpose.Rcheck/xpose’
CRAN
* installing *source* package ‘xpose’ ...
** package ‘xpose’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xpose)
xpose.xtras
- Version: 0.0.2
- GitHub: https://github.com/jprybylski/xpose.xtras
- Source code: https://github.com/cran/xpose.xtras
- Date/Publication: 2024-11-21 17:20:02 UTC
- Number of recursive dependencies: 106
Run revdepcheck::cloud_details(, "xpose.xtras") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘xpose.xtras-Ex.R’ failed
The error most likely occurred in:
Name: catdv_vs_dvprobs
Title: Non-simulation based likelihood model diagnostic
Aliases: catdv_vs_dvprobs
** Examples
...
4. ├─purrr::map_if(...)
5. │ └─purrr:::where_if(.x, .p)
6. │ └─rlang::is_logical(.p)
7. ├─stringr::str_detect(., "@")
8. │ └─stringr:::check_lengths(string, pattern)
9. │ └─vctrs::vec_size_common(...)
10. └─vctrs:::stop_scalar_type(<fn>(<ggplt2::>), "string", <env>)
11. └─vctrs:::stop_vctrs(...)
12. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
-
checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
- ├─stringr::str_detect(., "@")
- │ └─stringr:::check_lengths(string, pattern)
- │ └─vctrs::vec_size_common(...)
- └─vctrs:::stop_scalar_type(
<fn>(<ggplt2::>), "string", <env>)
- └─vctrs:::stop_vctrs(...)
- └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
[ FAIL 10 | WARN 0 | SKIP 4 | PASS 622 ]
Error: Test failures
Execution halted
```
-
checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘a01-the-xp_xtra-object.Rmd’ using rmarkdown
Quitting from a01-the-xp_xtra-object.Rmd:94-96 [plot_cont]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a01-the-xp_xtra-object.Rmd' failed with diagnostics:
string must be a vector, not a object.
...
Error: processing vignette 'a03-useful_plots.Rmd' failed with diagnostics:
string must be a vector, not a object.
--- failed re-building ‘a03-useful_plots.Rmd’
SUMMARY: processing the following files failed:
‘a01-the-xp_xtra-object.Rmd’ ‘a02-xpose-sets.Rmd’
‘a03-useful_plots.Rmd’
Error: Vignette re-building failed.
Execution halted
```
In both
-
checking installed package size ... NOTE
installed size is 7.9Mb
sub-directories of 1Mb or more:
data 2.5Mb
doc 2.4Mb
-
checking data for non-ASCII characters ... NOTE
Note: found 2 marked UTF-8 strings
yamlet
- Version: 1.2.1
- GitHub: https://github.com/bergsmat/yamlet
- Source code: https://github.com/cran/yamlet
- Date/Publication: 2025-04-18 12:30:02 UTC
- Number of recursive dependencies: 100
Run revdepcheck::cloud_details(, "yamlet") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggplot_isometric:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggplot_symmetric:
function(object, plot, object_name)
ggplot_build:
function(plot, ...)
ggplot_build.decorated_ggplot:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
In both
- checking re-building of vignette outputs ... WARNING
Error(s) in re-building vignettes:
--- re-building ‘scripted-html.Rmd’ using rmarkdown
ZetaSuite
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/ZetaSuite
- Date/Publication: 2022-05-24 19:40:02 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "ZetaSuite") for more info
Newly broken
- checking whether package ‘ZetaSuite’ can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘ZetaSuite’
See ‘/tmp/workdir/ZetaSuite/new/ZetaSuite.Rcheck/00install.out’ for details.
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘dplyr’
All declared Imports should be used.
hadley/ggplot2 documentation built on June 13, 2025, 12:51 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
activAnalyzer
- Version: 2.1.2
- GitHub: https://github.com/pydemull/activAnalyzer
- Source code: https://github.com/cran/activAnalyzer
- Date/Publication: 2024-09-23 23:40:02 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "activAnalyzer") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘activAnalyzer.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.8Mb sub-directories of 1Mb or more: R 1.5Mb doc 1.0Mb extdata 2.0Mb
actxps
- Version: 1.6.0
- GitHub: https://github.com/mattheaphy/actxps
- Source code: https://github.com/cran/actxps
- Date/Publication: 2025-01-07 13:00:02 UTC
- Number of recursive dependencies: 129
Run revdepcheck::cloud_details(, "actxps") for more info
Newly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘actxps.Rmd’ using rmarkdown
Quitting from actxps.Rmd:10-18 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
get(): ! object 'ggplot_build.ggplot' not foundBacktrace: ...
Error: processing vignette 'transactions.Rmd' failed with diagnostics: object 'ggplot_build.ggplot' not found --- failed re-building ‘transactions.Rmd’
SUMMARY: processing the following files failed: ‘actxps.Rmd’ ‘misc.Rmd’ ‘transactions.Rmd’
Error: Vignette re-building failed. Execution halted ```
adklakedata
- Version: 0.6.1
- GitHub: https://github.com/lawinslow/adklakedata
- Source code: https://github.com/cran/adklakedata
- Date/Publication: 2018-02-16 19:08:16 UTC
- Number of recursive dependencies: 61
Run revdepcheck::cloud_details(, "adklakedata") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘adklakedata-Ex.R’ failed The error most likely occurred in:
Name: adk_lake_shapes
Title: Return path to Lake Polygons Shapefile
Aliases: adk_lake_shapes
** Examples
library(sf) Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE bl = read_sf(adklakedata::adk_shape()) Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : package tibble not available: install first? Calls: read_sf ... st_read -> st_read.character -> process_cpl_read_ogr Execution halted ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
adsoRptionCMF
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/adsoRptionCMF
- Date/Publication: 2025-06-05 10:00:05 UTC
- Number of recursive dependencies: 46
Run revdepcheck::cloud_details(, "adsoRptionCMF") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘adsoRptionCMF-Ex.R’ failed The error most likely occurred in:
Name: fit_freundlichLM
Title: Freundlich Isotherm Linear Analysis
Aliases: fit_freundlichLM
** Examples
Ce <- c(0.01353, 0.04648, 0.13239, 0.27714, 0.41600, 0.63607, 0.80435, 1.10327, 1.58223) ... 17. │ └─l$compute_geom_2(d, theme = plot@theme) 18. │ └─ggplot2 (local) compute_geom_2(..., self = self) 19. │ └─self$geom$use_defaults(...) 20. │ └─ggplot2 (local) use_defaults(..., self = self) 21. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) 22. │ └─vctrs::list_sizes(x) 23. └─vctrs:::stop_scalar_type(
<fn>(<expression>), "x$label",<env>) 24. └─vctrs:::stop_vctrs(...) 25. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted ```
adw
- Version: 0.4.0
- GitHub: https://github.com/PanfengZhang/adw
- Source code: https://github.com/cran/adw
- Date/Publication: 2024-04-15 19:10:16 UTC
- Number of recursive dependencies: 59
Run revdepcheck::cloud_details(, "adw") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘adw-Ex.R’ failed The error most likely occurred in:
Name: adw
Title: Angular Distance Weighting Interpolation.
Aliases: adw
** Examples
set.seed(2) ... 4 111.75 31.25 -0.47570806 5 112.25 31.25 -1.57521787 6 112.75 31.25 -1.10541492
example 2
hmap <- cnmap::getMap(code = "410000") |> sf::st_make_valid() # return a 'sf' object. Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : package tibble not available: install first? Calls: ... st_read -> st_read.character -> process_cpl_read_ogr Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Introduction.Rmd’ using rmarkdown
Quitting from Introduction.Rmd:47-74 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
process_cpl_read_ogr(): ! package tibble not available: install first?Backtrace: ...
Error: processing vignette 'Introduction.Rmd' failed with diagnostics: package tibble not available: install first? --- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed: ‘Introduction.Rmd’
Error: Vignette re-building failed. Execution halted ```
AeRobiology
- Version: 2.0.1
- GitHub: NA
- Source code: https://github.com/cran/AeRobiology
- Date/Publication: 2019-06-03 06:20:03 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "AeRobiology") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘my-vignette.Rmd’ using rmarkdown
afex
- Version: 1.4-1
- GitHub: https://github.com/singmann/afex
- Source code: https://github.com/cran/afex
- Date/Publication: 2024-09-01 16:10:02 UTC
- Number of recursive dependencies: 237
Run revdepcheck::cloud_details(, "afex") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown
AgroR
- Version: 1.3.6
- GitHub: NA
- Source code: https://github.com/cran/AgroR
- Date/Publication: 2024-04-24 02:20:18 UTC
- Number of recursive dependencies: 117
Run revdepcheck::cloud_details(, "AgroR") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘AgroR-Ex.R’ failed The error most likely occurred in:
Name: TBARPLOT.reverse
Title: Graph: Reverse graph of DICT, DBCT and DQL output when
geom="bar"
Aliases: TBARPLOT.reverse
Keywords: Experimental
** Examples
... 3 7.822709e-05 0.59104221 0.46541352 0.3244232 4.189412 4 1.496061e-02 0.09984009 0.09849058 0.1332682 6.462590 5 1.757687e-04 0.67552390 0.42726077 0.3008609 2.566743 6 1.138255e-04 0.70461554 0.37578092 0.6357482 2.093636 TBARPLOT.reverse(a) Warning in geom_text(aes(label = letra, y = media + desvio + sup), position = position_dodge(0.9), : Ignoring empty aesthetics:
sizeandfamily. Error in if (colo == "gray") { : argument is of length zero Calls: TBARPLOT.reverse Execution halted ```
AgroReg
- Version: 1.2.10
- GitHub: NA
- Source code: https://github.com/cran/AgroReg
- Date/Publication: 2024-01-16 12:50:16 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "AgroReg") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘AgroReg-Ex.R’ failed The error most likely occurred in:
Name: adjust_scale
Title: Utils: Adjust y and x scale
Aliases: adjust_scale
** Examples
library(AgroReg) ... data("aristolochia") attach(aristolochia) a=LM(trat,resp)
b=LL(trat,resp,npar = "LL.3") a=plot_arrange(list(a,b),gray = TRUE) Error in equation[[i]] <- plots[[i]][[3]]$plot$s : replacement has length zero Calls: plot_arrange Execution halted ```
alookr
- Version: 0.3.9
- GitHub: https://github.com/choonghyunryu/alookr
- Source code: https://github.com/cran/alookr
- Date/Publication: 2024-02-11 07:30:02 UTC
- Number of recursive dependencies: 168
Run revdepcheck::cloud_details(, "alookr") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘alookr-Ex.R’ failed The error most likely occurred in:
Name: compare_plot
Title: Comparison plot of train set and test set
Aliases: compare_plot
** Examples
library(dplyr) ... sb %>% + compare_plot() Warning:
unite_()was deprecated in tidyr 1.2.0. ℹ Please useunite()instead. ℹ The deprecated feature was likely used in the ggmosaic package. Please report the issue at https://github.com/haleyjeppson/ggmosaic. Error in make_title(..., self = self) : unused arguments ("dataset class", "x") Calls: %>% ... labels -> -> resolve_label -> Execution halted ```
AnalysisLin
- Version: 0.1.2
- GitHub: NA
- Source code: https://github.com/cran/AnalysisLin
- Date/Publication: 2024-01-30 00:10:10 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "AnalysisLin") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘AnalysisLin-Ex.R’ failed The error most likely occurred in:
Name: bar_plot
Title: Bar Plots for Categorical Variables
Aliases: bar_plot
** Examples
data(iris) bar_plot(iris) Error in pm[[2]] : subscript out of bounds Calls: bar_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
andurinha
- Version: 0.0.2
- GitHub: https://github.com/noemiallefs/andurinha
- Source code: https://github.com/cran/andurinha
- Date/Publication: 2020-08-13 08:40:02 UTC
- Number of recursive dependencies: 74
Run revdepcheck::cloud_details(, "andurinha") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(andurinha) > > test_check("andurinha") sample absMax 1 A 0.465 2 B 0.402 ... ── Failure ('test_funtionsOutput.R:29:3'): plotPeaks return a ggplot objetc ──── class(...) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test_funtionsOutput.R:32:3'): plotPeaks return a ggplot objetc ──── class(...) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 43 ] Error: Test failures Execution halted ```
animbook
- Version: 1.0.0
- GitHub: https://github.com/KrisanatA/animbook
- Source code: https://github.com/cran/animbook
- Date/Publication: 2023-12-05 17:50:07 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "animbook") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘animbook-Ex.R’ failed The error most likely occurred in:
Name: anim_animate
Title: Modified the ggplot object
Aliases: anim_animate
** Examples
animbook <- anim_prep(data = osiris, id = ID, values = sales, time = year, group = japan)
plot <- wallaby_plot(animbook) You can now use the animbook::anim_animate() function to transform it into an animated object
animate <- anim_animate(plot) Error in plot$plot_env : object of type 'object' is not subsettable Calls: anim_animate Execution halted ```
ANN2
- Version: 2.3.4
- GitHub: https://github.com/bflammers/ANN2
- Source code: https://github.com/cran/ANN2
- Date/Publication: 2020-12-01 10:00:02 UTC
- Number of recursive dependencies: 48
Run revdepcheck::cloud_details(, "ANN2") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ANN2) > > # Only test if not on mac > if (tolower(Sys.info()[["sysname"]]) != "darwin") {
- test_check("ANN2")
- } ... ── Failure ('test-plotting.R:59:3'): the reconstruction_plot.ANN() function works correctly ── p_AE$labels$colour not equal to "col". target is NULL, current is character ── Failure ('test-plotting.R:77:3'): the compression_plot.ANN() function works correctly ── p_AE$labels$colour not equal to "col". target is NULL, current is character
[ FAIL 5 | WARN 2 | SKIP 4 | PASS 143 ] Error: Test failures Execution halted ```
In both
-
checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential -
checking installed package size ... NOTE
installed size is 48.9Mb sub-directories of 1Mb or more: cereal 1.4Mb libs 47.4Mb -
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
APackOfTheClones
- Version: 1.2.4
- GitHub: https://github.com/Qile0317/APackOfTheClones
- Source code: https://github.com/cran/APackOfTheClones
- Date/Publication: 2024-11-18 22:30:02 UTC
- Number of recursive dependencies: 174
Run revdepcheck::cloud_details(, "APackOfTheClones") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘APackOfTheClones-Ex.R’ failed The error most likely occurred in:
Name: APOTCPlot
Title: Various variations of visualizations of clonal expansion
post-RunAPOTC
Aliases: APOTCPlot
** Examples
... by .GlobalEnv when processing object ‘combined_pbmc’ Warning: namespace ‘colorspace’ is not available and has been replaced by .GlobalEnv when processing object ‘combined_pbmc’
combined_pbmc <- RunAPOTC( + combined_pbmc, run_id = "run1", verbose = FALSE + )
plotting with default arguments will plot the latest "run1"
clonal_packing_plot <- APOTCPlot(combined_pbmc) ```
-
checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html ...
- │ └─vctrs:::stop_names(...)
- │ └─vctrs:::stop_vctrs(...)
- │ └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
- ├─APackOfTheClones:::name_latest_legend_layer(.)
- │ └─plt %>% name_latest_layer(.ApotcLegendLayerName)
- └─APackOfTheClones:::name_latest_layer(., .ApotcLegendLayerName)
[ FAIL 5 | WARN 57 | SKIP 10 | PASS 239 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘APackOfTheClones-install.Rmd’ using rmarkdown --- finished re-building ‘APackOfTheClones-install.Rmd’
--- re-building ‘APackOfTheClones-runs.Rmd’ using rmarkdown ```
In both
-
checking contents of ‘data’ directory ... WARNING
Output for data("combined_pbmc", package = "APackOfTheClones"): Warning: namespace ‘colorspace’ is not available and has been replaced by .GlobalEnv when processing object ‘combined_pbmc’ Warning: namespace ‘colorspace’ is not available and has been replaced by .GlobalEnv when processing object ‘combined_pbmc’ Warning: namespace ‘colorspace’ is not available and has been replaced by .GlobalEnv when processing object ‘combined_pbmc’ Warning: namespace ‘colorspace’ is not available and has been replaced by .GlobalEnv when processing object ‘combined_pbmc’ -
checking installed package size ... NOTE
installed size is 7.6Mb sub-directories of 1Mb or more: help 1.1Mb libs 5.3Mb
APCtools
- Version: 1.0.4
- GitHub: https://github.com/bauer-alex/APCtools
- Source code: https://github.com/cran/APCtools
- Date/Publication: 2023-01-13 23:30:02 UTC
- Number of recursive dependencies: 112
Run revdepcheck::cloud_details(, "APCtools") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘APCtools-Ex.R’ failed The error most likely occurred in:
Name: plot_densityMatrix
Title: Create a matrix of density plots
Aliases: plot_densityMatrix
** Examples
library(APCtools) ... 2.2.0 and is now defunct. ℹ Please use the
rowsargument instead. Backtrace: ▆ 1. └─APCtools::plot_densityMatrix(...) 2. └─ggplot2::facet_grid(facets = facet_formula, switch = "y") 3. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") 4. └─lifecycle:::deprecate_stop0(msg) 5. └─rlang::cnd_signal(...) Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(APCtools) > > test_check("APCtools") Loading required package: nlme This is mgcv 1.9-1. For overview type 'help("mgcv-package")'. Excluding 9565 missing observations of mainTrip_distance... ... ▆
- └─APCtools::plot_densityMatrix(...) at test-plots_descriptive.R:148:3
- └─ggplot2::facet_grid(facets = facet_formula, switch = "y")
- └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)")
- └─lifecycle:::deprecate_stop0(msg)
- └─rlang::cnd_signal(...)
[ FAIL 2 | WARN 51 | SKIP 0 | PASS 84 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘main_functionality.Rmd’ using rmarkdown
aplot
- Version: 0.2.5
- GitHub: https://github.com/YuLab-SMU/aplot
- Source code: https://github.com/cran/aplot
- Date/Publication: 2025-02-27 03:50:02 UTC
- Number of recursive dependencies: 47
Run revdepcheck::cloud_details(, "aplot") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.axisAlign: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.alab: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
applicable
- Version: 0.1.1
- GitHub: https://github.com/tidymodels/applicable
- Source code: https://github.com/cran/applicable
- Date/Publication: 2024-04-25 00:00:04 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "applicable") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(applicable) Loading required package: ggplot2 > > test_check("applicable") Loading required package: dplyr ...expectedis a character vector ('percentile') ── Failure ('test-plot.R:36:3'): output of autoplot.apd_pca is correct when options=distance are provided ── ad_plot$labels$y (actual) not equal to "percentile" (expected`).actualis NULLexpectedis a character vector ('percentile')[ FAIL 3 | WARN 0 | SKIP 22 | PASS 90 ] Error: Test failures Execution halted ```
arena2r
- Version: 1.0.0
- GitHub: https://github.com/pedroliman/arena2r
- Source code: https://github.com/cran/arena2r
- Date/Publication: 2018-10-19 15:30:03 UTC
- Number of recursive dependencies: 86
Run revdepcheck::cloud_details(, "arena2r") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(arena2r) > > test_check("arena2r") [ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Failure ('tests_arena2r.R:31:3'): plots_sao_gerados ─────────────────────────
plot_confhas type 'object', not 'list'. ── Failure ('tests_arena2r.R:32:3'): plots_sao_gerados ─────────────────────────plot_scathas type 'object', not 'list'. ── Failure ('tests_arena2r.R:33:3'): plots_sao_gerados ─────────────────────────plot_boxhas type 'object', not 'list'.[ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘purrr’ ‘shinyBS’ ‘shinydashboard’ ‘shinyjs’ All declared Imports should be used.
ARUtools
- Version: 0.7.2
- GitHub: https://github.com/ARUtools/ARUtools
- Source code: https://github.com/cran/ARUtools
- Date/Publication: 2025-03-19 19:20:05 UTC
- Number of recursive dependencies: 140
Run revdepcheck::cloud_details(, "ARUtools") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ARUtools-Ex.R’ failed The error most likely occurred in:
Name: calc_selection_weights
Title: Calculate Selection Weights
Aliases: calc_selection_weights
** Examples
s <- clean_site_index(example_sites_clean, ... + calc_sun() Extracting ARU info... Extracting Dates and Times... Joining by columns
date_time_startanddate_time_endparams <- sim_selection_weights() Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ARUtools) > > test_check("ARUtools") sh: 1: sox: not found Extracting Dates and Times... ! Omitted 1 extra, non-json/GPS files ...
- │ └─base::force(code)
- └─S7:::Ops.S7_object((p1 + p2)/p3, ggplot2::theme_minimal(base_size = 14))
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 567 ] Deleting unused snapshots: • 08_selections/sim-selection-weights1.svg • 08_selections/sim-selection-weights2.svg • 08_selections/sim-selection-weights3.svg Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘ARUtools.Rmd’ using rmarkdown --- finished re-building ‘ARUtools.Rmd’
--- re-building ‘Misc.Rmd’ using rmarkdown --- finished re-building ‘Misc.Rmd’
--- re-building ‘SubSample.Rmd’ using rmarkdown
Quitting from SubSample.Rmd:115-124 [unnamed-chunk-5] ... --- finished re-building ‘spatial.Rmd’
--- re-building ‘timezones.Rmd’ using rmarkdown --- finished re-building ‘timezones.Rmd’
SUMMARY: processing the following files failed: ‘SubSample.Rmd’ ‘multisampling.Rmd’
Error: Vignette re-building failed. Execution halted ```
ASRgenomics
- Version: 1.1.4
- GitHub: NA
- Source code: https://github.com/cran/ASRgenomics
- Date/Publication: 2024-01-29 21:20:02 UTC
- Number of recursive dependencies: 136
Run revdepcheck::cloud_details(, "ASRgenomics") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html ...expected[2:2]: "ggplot" ── Failure ('test-qc.R:58:3'): filters work ──────────────────────────────────── class(M_filter$plot.maf) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 5 | WARN 7 | SKIP 0 | PASS 258 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 8.9Mb sub-directories of 1Mb or more: data 8.5Mb
assignPOP
- Version: 1.3.0
- GitHub: https://github.com/alexkychen/assignPOP
- Source code: https://github.com/cran/assignPOP
- Date/Publication: 2024-03-13 08:30:02 UTC
- Number of recursive dependencies: 138
Run revdepcheck::cloud_details(, "assignPOP") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(assignPOP) > > test_check("assignPOP")
Correct assignment rates were estimated!! A total of 3 assignment tests for 3 pops.... ── Failure ('test_accuracy.R:8:3'): Calculate assignment accuracy for Monte-Carlo results ──
plothas type 'object', not 'list'. ── Failure ('test_accuracy.R:18:3'): Calculate assignment accuracy for K-fold results ──plothas type 'object', not 'list'. ── Failure ('test_membership.R:5:3'): Plot membership probability ──────────────plothas type 'object', not 'list'.[ FAIL 3 | WARN 0 | SKIP 0 | PASS 39 ] Error: Test failures Execution halted ```
autocogs
- Version: 0.1.4
- GitHub: https://github.com/schloerke/autocogs
- Source code: https://github.com/cran/autocogs
- Date/Publication: 2021-05-29 17:00:05 UTC
- Number of recursive dependencies: 70
Run revdepcheck::cloud_details(, "autocogs") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(autocogs) > > test_check("autocogs") [ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... 8. └─autocogs (local) FUN(X[[i]], ...) 9. └─base::lapply(...) 10. └─autocogs (local) FUN(X[[i]], ...) 11. ├─base::do.call(fn, args) 12. └─autocogs (local)
<fn>(...) 13. └─base::do.call(loess, c(core_params, params$method.args))[ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’ All declared Imports should be used.
autoplotly
- Version: 0.1.4
- GitHub: https://github.com/terrytangyuan/autoplotly
- Source code: https://github.com/cran/autoplotly
- Date/Publication: 2021-04-18 06:50:11 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "autoplotly") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘autoplotly-Ex.R’ failed The error most likely occurred in:
Name: autoplotly
Title: Automatic Visualization of Popular Statistical Results Using
'plotly.js' and 'ggplot2'
Aliases: autoplotly
** Examples
... p <- autoplotly(prcomp(iris[c(1, 2, 3, 4)]), data = iris, + colour = 'Species', label = TRUE, label.size = 3, frame = TRUE) Warning:
aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the ggfortify package. Please report the issue at https://github.com/sinhrks/ggfortify/issues. Error in pm[[2]] : subscript out of bounds Calls: autoplotly ... autoplotly.default -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(autoplotly) > > test_check("autoplotly") [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ▆ 1. ├─autoplotly::autoplotly(...) at test_all.R:26:3 2. └─autoplotly:::autoplotly.default(...) 3. ├─plotly::ggplotly(...) 4. └─plotly:::ggplotly.ggplot(...) 5. └─plotly::gg2list(...)
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] Error: Test failures Execution halted ```
autoReg
- Version: 0.3.3
- GitHub: https://github.com/cardiomoon/autoReg
- Source code: https://github.com/cran/autoReg
- Date/Publication: 2023-11-14 05:53:27 UTC
- Number of recursive dependencies: 216
Run revdepcheck::cloud_details(, "autoReg") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘autoReg-Ex.R’ failed The error most likely occurred in:
Name: modelPlot
Title: Draw coefficients/odds ratio/hazard ratio plot
Aliases: modelPlot
** Examples
fit=lm(mpg~wt*hp+am,data=mtcars) modelPlot(fit,widths=c(1,0,2,3)) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Automatic_Regression_Modeling.Rmd’ using rmarkdown
Quitting from Automatic_Regression_Modeling.Rmd:141-143 [unnamed-chunk-15] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Can't find method for generic
&(e1, e2): - e1: - e2: ... Error: processing vignette 'Getting_started.Rmd' failed with diagnostics: Can't find method for generic&(e1, e2): - e1: - e2: --- failed re-building ‘Getting_started.Rmd’--- re-building ‘Statiastical_test_in_gaze.Rmd’ using rmarkdown --- finished re-building ‘Statiastical_test_in_gaze.Rmd’
--- re-building ‘Survival.Rmd’ using rmarkdown ```
bartMan
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/bartMan
- Date/Publication: 2024-07-24 12:10:02 UTC
- Number of recursive dependencies: 133
Run revdepcheck::cloud_details(, "bartMan") for more info
Newly broken
- checking whether package ‘bartMan’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘bartMan’ ...
** package ‘bartMan’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in eval(exprs[i], envir) : object 'justify_grobs' not found
Error: unable to load R code in package ‘bartMan’
Execution halted
ERROR: lazy loading failed for package ‘bartMan’
* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’
CRAN
* installing *source* package ‘bartMan’ ...
** package ‘bartMan’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bartMan)
bayesAB
- Version: 1.1.3
- GitHub: https://github.com/FrankPortman/bayesAB
- Source code: https://github.com/cran/bayesAB
- Date/Publication: 2021-06-25 00:50:02 UTC
- Number of recursive dependencies: 69
Run revdepcheck::cloud_details(, "bayesAB") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(bayesAB) > > test_check("bayesAB") [ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-dists.R:34:3'): Success ────────────────────────────────────── plotNormalInvGamma(3, 1, 1, 1)$labels$y not equal to "sig_sq". target is NULL, current is character
[ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) plotDistributions.Rd:32: Lost braces 32 | plot{...} functions are generated programmatically so the function calls in | ^
bayesassurance
- Version: 0.1.0
- GitHub: https://github.com/jpan928/bayesassurance_rpackage
- Source code: https://github.com/cran/bayesassurance
- Date/Publication: 2022-06-17 10:40:17 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "bayesassurance") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(bayesassurance) > > test_check("bayesassurance") [1] 20 10 [1] 30 10 [1] 40 10 ... Error inout$plot$labels`: object of type 'object' is not subsettable Backtrace: ▆- └─testthat::expect_identical(out$plot$labels$y, "Power/Assurance") at test-pwr_curves.R:114:3
- └─testthat::quasi_label(enquo(object), label, arg = "object")
- └─rlang::eval_bare(expr, quo_get_env(quo))
[ FAIL 15 | WARN 92 | SKIP 0 | PASS 125 ] Error: Test failures Execution halted ```
BayesCVI
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/BayesCVI
- Date/Publication: 2024-09-04 15:50:02 UTC
- Number of recursive dependencies: 30
Run revdepcheck::cloud_details(, "BayesCVI") for more info
Newly broken
- checking whether package ‘BayesCVI’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘BayesCVI’ See ‘/tmp/workdir/BayesCVI/new/BayesCVI.Rcheck/00install.out’ for details.
BayesERtools
- Version: 0.2.2
- GitHub: NA
- Source code: https://github.com/cran/BayesERtools
- Date/Publication: 2025-06-06 20:20:02 UTC
- Number of recursive dependencies: 215
Run revdepcheck::cloud_details(, "BayesERtools") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ── Failure ('test-plot_ermod.R:183:5'): plot_er show caption ───────────────────plot_er(...)produced warnings. ── Failure ('test-plot_ermod.R:194:3'): plot_er show caption ───────────────────plot_er(...)produced warnings. ── Failure ('test-plot_ermod.R:209:5'): plot_er_gof ────────────────────────────plot_er_gof(ermod_bin, show_coef_exp = TRUE, show_caption = TRUE)` produced warnings.[ FAIL 8 | WARN 3 | SKIP 0 | PASS 168 ] Error: Test failures Execution halted ```
BayesianReasoning
- Version: 0.4.2
- GitHub: https://github.com/gorkang/BayesianReasoning
- Source code: https://github.com/cran/BayesianReasoning
- Date/Publication: 2023-11-14 11:33:20 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "BayesianReasoning") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(BayesianReasoning) > > test_check("BayesianReasoning")
Plot created in: ./FP_10_sens_100_screening_1667_diagnostic_44.png
...
names(expected)is absent ── Failure ('test-PPV_heatmap.R:1097:3'): Plot with line overlay ─────────────── vapply(p$result$layers, function(x) class(x$geom)[1], "") (actual) not identical to c("GeomTile", "GeomSegment", "GeomPoint", "GeomMarkRect") (expected).names(actual)is a character vector ('geom_tile', 'annotate', 'annotate...3', 'geom_mark_rect')names(expected)is absent[ FAIL 8 | WARN 16 | SKIP 4 | PASS 115 ] Error: Test failures Execution halted ```
BayesMallows
- Version: 2.2.3
- GitHub: https://github.com/ocbe-uio/BayesMallows
- Source code: https://github.com/cran/BayesMallows
- Date/Publication: 2025-01-14 11:30:02 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "BayesMallows") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...expectedis a character vector ('interaction(chain, cluster)') ── Failure ('test-assess_convergence.R:217:3'): assess_convergence.BayesMallowsMixtures works ── p$labels$colour (actual) not equal to "cluster" (expected`).actualis NULLexpectedis a character vector ('cluster')[ FAIL 10 | WARN 0 | SKIP 10 | PASS 363 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 23.8Mb sub-directories of 1Mb or more: doc 2.7Mb libs 20.2Mb
BayesMultiMode
- Version: 0.7.3
- GitHub: https://github.com/paullabonne/BayesMultiMode
- Source code: https://github.com/cran/BayesMultiMode
- Date/Publication: 2024-10-31 15:30:06 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "BayesMultiMode") for more info
Newly broken
- checking whether package ‘BayesMultiMode’ can be installed ... WARNING
Found the following significant warnings: Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. See ‘/tmp/workdir/BayesMultiMode/new/BayesMultiMode.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 6.5Mb sub-directories of 1Mb or more: help 6.1Mb
bayesplot
- Version: 1.12.0
- GitHub: https://github.com/stan-dev/bayesplot
- Source code: https://github.com/cran/bayesplot
- Date/Publication: 2025-04-10 10:10:06 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "bayesplot") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(bayesplot) This is bayesplot version 1.12.0
- Online documentation and vignettes at mc-stan.org/bayesplot
- bayesplot theme set to bayesplot::theme_default()
- Does not affect other ggplot2 plots
- See ?bayesplot_theme_set for details on theme setting ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-mcmc-traces.R:59:3'): mcmc_trace options work ──────────────── all(c("xmin", "xmax", "ymin", "ymax") %in% names(ll)) is not TRUE
actual: FALSEexpected: TRUE[ FAIL 1 | WARN 2 | SKIP 74 | PASS 1032 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 9.2Mb sub-directories of 1Mb or more: R 5.0Mb doc 3.5Mb
BCEA
- Version: 2.4.7
- GitHub: https://github.com/n8thangreen/BCEA
- Source code: https://github.com/cran/BCEA
- Date/Publication: 2025-01-14 12:30:08 UTC
- Number of recursive dependencies: 123
Run revdepcheck::cloud_details(, "BCEA") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘BCEA-Ex.R’ failed The error most likely occurred in:
Name: plot.bcea
Title: Summary Plot of the Health Economic Analysis
Aliases: plot.bcea
Keywords: hplot
** Examples
... 21. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 22. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 23. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 24. │ └─base::withCallingHandlers(...) 25. └─ggplot2::merge_element(t2[[item]], t1[[item]]) 26. ├─S7::S7_dispatch() 27. └─ggplot2 (local)
method(merge_element, list(class_any, class_any))(new =<named list>, old =<ggpl2::_>, ...) 28. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") 29. └─rlang::abort(...) Execution halted ```
bdsm
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/bdsm
- Date/Publication: 2025-05-02 18:50:02 UTC
- Number of recursive dependencies: 110
Run revdepcheck::cloud_details(, "bdsm") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... [2] "ggplot" - [3] "ggplot2::gg" - [4] "S7_object" - [5] "gg" | "gg" [1] - "ggplot" [2] [6] "ggarrange" | "ggarrange" [3]
[ FAIL 10 | WARN 0 | SKIP 6 | PASS 69 ] Error: Test failures Execution halted ```
In both
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checking re-building of vignette outputs ... WARNING
`` Error(s) in re-building vignettes: ... --- re-building ‘bdsm_vignette.Rnw’ using Sweave Error: processing vignette 'bdsm_vignette.Rnw' failed with diagnostics: Running 'texi2dvi' on 'bdsm_vignette.tex' failed. LaTeX errors: ! LaTeX Error: Filevmargin.sty' not found.Type X to quit or to proceed, or enter new name. (Default extension: sty) ... l.5 \usepackage {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘bdsm_vignette.Rnw’
SUMMARY: processing the following file failed: ‘bdsm_vignette.Rnw’
Error: Vignette re-building failed. Execution halted ```
BeeBDC
- Version: 1.2.1
- GitHub: https://github.com/jbdorey/BeeBDC
- Source code: https://github.com/cran/BeeBDC
- Date/Publication: 2024-11-04 04:10:02 UTC
- Number of recursive dependencies: 217
Run revdepcheck::cloud_details(, "BeeBDC") for more info
Newly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... attributes(testOut)$class (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot" ── Failure ('test-summaryMaps.R:23:3'): summaryMaps expected class ─────────────testMaphas type 'object', not 'list'.[ FAIL 8 | WARN 5 | SKIP 0 | PASS 242 ] Error: Test failures Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 219 marked UTF-8 strings
benchr
- Version: 0.2.5
- GitHub: NA
- Source code: https://github.com/cran/benchr
- Date/Publication: 2020-03-07 06:30:03 UTC
- Number of recursive dependencies: 28
Run revdepcheck::cloud_details(, "benchr") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if (requireNamespace("tinytest", quietly = TRUE)) {
- tinytest::test_package("benchr")
- }
test-benchmark.R.............. 0 tests 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| ********| ... call| expect_equal(class(pp2), c("gg", "ggplot")) diff| Lengths (2, 5) differ (string compare on first 2) diff| 1 string mismatch ----- FAILED[attr]: test-plot.R<62--62> call| expect_equal(pp2$labels, list(x = "replications", y = "time", call| --> colour = NULL)) diff| Attributes: < names for current but not for target > diff| Attributes: < Length mismatch: comparison on first 0 components > Error: 10 out of 176 tests failed Execution halted ```
In both
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checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential -
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
biclustermd
- Version: 0.2.3
- GitHub: https://github.com/jreisner/biclustermd
- Source code: https://github.com/cran/biclustermd
- Date/Publication: 2021-06-17 15:10:06 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "biclustermd") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biclustermd) Loading required package: ggplot2 Loading required package: tidyr
Attaching package: 'tidyr'
... ── Failure ('test-autoplot_biclustermd.R:6:3'): autoplot_biclustermd() correctly plots cluster lines ── ap$data[[3]]$xintercept[-1] not equal to cumsum(colSums(sbc$P)) + 0.5. Classes differ: 'mapped_discrete'/'numeric' is not 'numeric' ── Failure ('test-autoplot_biclustermd.R:7:3'): autoplot_biclustermd() correctly plots cluster lines ── ap$data[[4]]$yintercept[-1] not equal to cumsum(colSums(sbc$Q)) + 0.5. Classes differ: 'mapped_discrete'/'numeric' is not 'numeric'
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 66 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘nycflights13’ All declared Imports should be used.
biometryassist
- Version: 1.2.2
- GitHub: https://github.com/biometryhub/biometryassist
- Source code: https://github.com/cran/biometryassist
- Date/Publication: 2025-04-23 15:00:07 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "biometryassist") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biometryassist) > > test_check("biometryassist") Starting 2 test processes [ FAIL 1 | WARN 4 | SKIP 122 | PASS 170 ]
... • resplot/resplot-for-asreml-pt-1.svg • resplot/resplot-for-asreml-pt-2.svg • resplot/resplot-for-asreml-pt-3.svg • resplot/resplot-for-asreml-single.svg • resplot/resplot-for-lme4.svg • resplot/resplot-for-sommer-mmer.svg • resplot/resplot-for-sommer-mmes.svg • resplot/resplot-with-smaller-call.svg Error: Test failures Execution halted ```
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checking package dependencies ... NOTE
Packages which this enhances but not available for checking: 'asreml', 'ARTool', 'lme4', 'sommer' -
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘lme4’
BiVariAn
- Version: 1.0.1
- GitHub: https://github.com/AndresFloresG/BiVariAn
- Source code: https://github.com/cran/BiVariAn
- Date/Publication: 2025-03-05 13:10:02 UTC
- Number of recursive dependencies: 198
Run revdepcheck::cloud_details(, "BiVariAn") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘BiVariAn-Ex.R’ failed The error most likely occurred in:
Name: auto_bar_categ
Title: Automatic generation of barplot with percentages
Aliases: auto_bar_categ
** Examples
data<-data.frame(categ = rep(letters[1:2], 10), ... 1. └─BiVariAn::auto_bar_categ(data = data, groupvar = "categ", lang_labs = "EN") 2. └─BiVariAn (local) theme_func() 3. ├─... %+replace% ... 4. │ └─ggplot2::is_theme(e1) 5. │ └─S7::S7_inherits(x, class_theme) 6. └─ggprism::theme_prism(...) 7. └─parent %+replace% t 8. └─cli::cli_abort("{.code %+replace%} requires two theme objects") 9. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview ...
- │ └─ggplot2::is_theme(e1)
- │ └─S7::S7_inherits(x, class_theme)
- └─ggprism::theme_prism(...)
- └─parent %+replace% t
- └─cli::cli_abort("{.code %+replace%} requires two theme objects")
- └─rlang::abort(...)
[ FAIL 8 | WARN 2 | SKIP 7 | PASS 100 ] Error: Test failures Execution halted ```
blockCV
- Version: 3.1-5
- GitHub: https://github.com/rvalavi/blockCV
- Source code: https://github.com/cran/blockCV
- Date/Publication: 2024-11-01 08:20:02 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "blockCV") for more info
Newly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... ── Failure ('test-cv_plot.R:20:13'): test that cv_plot function works ──────────plthas type 'object', not 'list'. ── Failure ('test-cv_similarity.R:23:13'): test that cv_similarity function works with cv_spatil ──plthas type 'object', not 'list'. ── Failure ('test-cv_similarity.R:39:13'): test that cv_similarity function works with cv_buffer ──plt` has type 'object', not 'list'.[ FAIL 3 | WARN 0 | SKIP 1 | PASS 316 ] Error: Test failures Execution halted ```
boxly
- Version: 0.1.1
- GitHub: https://github.com/Merck/boxly
- Source code: https://github.com/cran/boxly
- Date/Publication: 2023-10-24 02:40:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "boxly") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...
- ├─plotly::add_trace(...)
- │ └─plotly::add_data(p, data)
- │ └─plotly:::is.plotly(p)
- ├─plotly::ggplotly(p, tooltip = "text", dynamicTicks = TRUE)
- └─plotly:::ggplotly.ggplot(p, tooltip = "text", dynamicTicks = TRUE)
- └─plotly::gg2list(...)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 25 ] Error: Test failures Execution halted ```
brolgar
- Version: 1.0.1
- GitHub: https://github.com/njtierney/brolgar
- Source code: https://github.com/cran/brolgar
- Date/Publication: 2024-05-10 14:50:34 UTC
- Number of recursive dependencies: 100
Run revdepcheck::cloud_details(, "brolgar") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘brolgar-Ex.R’ failed The error most likely occurred in:
Name: facet_sample
Title: Facet data into groups to facilitate exploration
Aliases: facet_sample
** Examples
library(ggplot2) ggplot(heights, + aes(x = year, + y = height_cm, + group = country)) + + geom_line() + + facet_sample() Error in if (params$as.table) { : argument is of length zero Calls: ... -> setup -> -> compute_layout Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘exploratory-modelling.Rmd’ using rmarkdown
Quitting from exploratory-modelling.Rmd:46-56 [use-gg-highlight] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'exploratory-modelling.Rmd' failed with diagnostics: ℹ In index: 1. ℹ With name: geom_line. Caused by error in
aes_param_name %in% names(non_null_default_aes) && is.na(non_null_default_aes[[ aes_param_name]]): ! 'length = 2' in coercion to 'logical(1)' --- failed re-building ‘exploratory-modelling.Rmd’--- re-building ‘finding-features.Rmd’ using rmarkdown ```
bullseye
- Version: 1.0.0
- GitHub: https://github.com/cbhurley/bullseye
- Source code: https://github.com/cran/bullseye
- Date/Publication: 2025-05-09 10:10:02 UTC
- Number of recursive dependencies: 158
Run revdepcheck::cloud_details(, "bullseye") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘bullseye-Ex.R’ failed The error most likely occurred in:
Name: add_nobs_to_pairwise
Title: Adds number of observations column to pairwise tibble
Aliases: add_nobs_to_pairwise
** Examples
irisc <- pairwise_scores(iris[40:150,], by= "Species") ... 20. │ └─base::lapply(...) 21. │ └─ggplot2 (local) FUN(X[[i]], ...) 22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 23. │ └─self$draw_panel(...) 24. └─base::.handleSimpleError(...) 25. └─rlang (local) h(simpleError(msg, call)) 26. └─handlers[1L] 27. └─cli::cli_abort(...) 28. └─rlang::abort(...) Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘calc_pairwise.Rmd’ using rmarkdown --- finished re-building ‘calc_pairwise.Rmd’
--- re-building ‘integrating.Rmd’ using rmarkdown ```
calibmsm
- Version: 1.1.2
- GitHub: NA
- Source code: https://github.com/cran/calibmsm
- Date/Publication: 2025-06-06 11:10:02 UTC
- Number of recursive dependencies: 171
Run revdepcheck::cloud_details(, "calibmsm") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... [2] "ggplot" - [3] "ggplot2::gg" - [4] "S7_object" - [5] "gg" | "gg" [1] - "ggplot" [2] [6] "ggarrange" | "ggarrange" [3]
[ FAIL 5 | WARN 0 | SKIP 15 | PASS 210 ] Error: Test failures Execution halted ```
calmr
- Version: 0.7.0
- GitHub: https://github.com/victor-navarro/calmr
- Source code: https://github.com/cran/calmr
- Date/Publication: 2025-05-11 21:30:02 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "calmr") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(calmr)
Attaching package: 'calmr'
The following object is masked from 'package:stats': ... ── Failure ('test-RSA.R:64:3'): plotting RSA with a test works ─────────────────
pltdoes not have names. ── Failure ('test-graphs.R:15:3'): calmr_model_graph works ─────────────────────gdoes not have names. ── Failure ('test-graphs.R:25:3'): calmr_model_graph takes a trial ─────────────gdoes not have names.[ FAIL 4 | WARN 5 | SKIP 0 | PASS 246 ] Error: Test failures Execution halted ```
canvasXpress
- Version: 1.56.1
- GitHub: https://github.com/neuhausi/canvasXpress
- Source code: https://github.com/cran/canvasXpress
- Date/Publication: 2025-04-08 19:30:02 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "canvasXpress") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(canvasXpress) > require(canvasXpress.data) Loading required package: canvasXpress.data > > test_check("canvasXpress") Loading required package: htmlwidgets ...
- │ └─base::withCallingHandlers(...)
- └─canvasXpress::ggplot.as.list(gplot)
- └─canvasXpress:::gg_cxplot(o, "canvas", ...)
- └─canvasXpress:::gg_theme(o)
- ├─base::as.character(e[[a]])
- └─base::as.character.default(e[[a]])
[ FAIL 9 | WARN 1 | SKIP 479 | PASS 58 ] Error: Test failures Execution halted ```
carbonr
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/carbonr
- Date/Publication: 2024-10-16 18:10:09 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "carbonr") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(carbonr) > > test_check("carbonr") [ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Failure ('test-output_display.R:15:3'): output_display generates gg/ggplot object ── class(output1) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test-output_display.R:16:3'): output_display generates gg/ggplot object ── class(output2) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ] Error: Test failures Execution halted ```
In both
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checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘sp’ ‘tibble’ All declared Imports should be used. -
checking data for non-ASCII characters ... NOTE
Note: found 710 marked UTF-8 strings
cartograflow
- Version: 1.0.5
- GitHub: https://github.com/fbahoken/cartogRaflow
- Source code: https://github.com/cran/cartograflow
- Date/Publication: 2023-10-17 22:40:21 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "cartograflow") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘cartograflow-Ex.R’ failed The error most likely occurred in:
Name: flowgini
Title: Analysis of flow concentration (Gini coefficient)
Aliases: flowgini
** Examples
library(cartograflow) ... ℹ Use
flowcuminstead. Warning: Use ofx$linkcumis discouraged. ℹ Uselinkcuminstead. Warning: Use ofx$flowcumis discouraged. ℹ Useflowcuminstead. Warning: Use ofx$flowcumis discouraged. ℹ Useflowcuminstead. Error in pm[[2]] : subscript out of bounds Calls: flowgini ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
cartographr
- Version: 0.2.2
- GitHub: https://github.com/da-wi/cartographr
- Source code: https://github.com/cran/cartographr
- Date/Publication: 2024-06-28 14:50:09 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "cartographr") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... > test_check("cartographr") [ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-utils.R:13:3'): add_attribution returns correct ggplot2 labs object ──
resultinherits from 'ggplot2::labels'/'gg'/'S7_object' not 'labels'.[ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.3Mb sub-directories of 1Mb or more: data 3.5Mb
cats
- Version: 1.0.2
- GitHub: NA
- Source code: https://github.com/cran/cats
- Date/Publication: 2022-03-11 10:20:07 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "cats") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘cats-Ex.R’ failed The error most likely occurred in:
Name: trial_ocs
Title: Calculates the operating characteristics of the cohort trial
Aliases: trial_ocs
** Examples
... + safety_prob = safety_prob, Bayes_Sup1 = Bayes_Sup1, Bayes_Sup2 = Bayes_Sup2, + cohort_offset = cohort_offset, sr_first_pos = sr_first_pos, + missing_prob = missing_prob, cohort_fixed = cohort_fixed, accrual_type = accrual_type, + accrual_param = accrual_param, hist_lag = hist_lag, analysis_times = analysis_times, + time_trend = time_trend, cohorts_start = cohorts_start, cohorts_sim = cohorts_sim, + iter = 2, coresnum = 1, save = FALSE, ret_list = TRUE, plot_ocs = TRUE + ) Error in pm[[2]] : subscript out of bounds Calls: trial_ocs -> -> ggplotly.ggplot -> gg2list Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘epitools’ ‘forcats’ ‘purrr’ All declared Imports should be used.
causact
- Version: 0.5.7
- GitHub: https://github.com/flyaflya/causact
- Source code: https://github.com/cran/causact
- Date/Publication: 2025-01-15 21:20:01 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "causact") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(causact) WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment.
Attaching package: 'causact'
The following objects are masked from 'package:stats': ... WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment. [ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-dag_plot.R:4:3'): dag plot creates graph ─────────────────────
plotGrhas type 'object', not 'list'.[ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ] Error: Test failures Execution halted ```
CausalImpact
- Version: 1.3.0
- GitHub: NA
- Source code: https://github.com/cran/CausalImpact
- Date/Publication: 2022-11-09 08:40:40 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "CausalImpact") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘CausalImpact_import_test.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # Copyright 2014-2022 Google Inc. All rights reserved. > # > # Licensed under the Apache License, Version 2.0 (the "License"); > # you may not use this file except in compliance with the License. > # You may obtain a copy of the License at > # ... Lengths differ: 5 is not 2 ── Failure ('test-impact-plot.R:147:3'): CreateImpactPlot ────────────────────── !isTRUE(all.equal(q1, q2, check.environment = FALSE)) is not TRUE
actual: FALSEexpected: TRUE[ FAIL 3 | WARN 4 | SKIP 0 | PASS 738 ] Error: Test failures Execution halted ```
centerline
- Version: 0.2.2
- GitHub: https://github.com/atsyplenkov/centerline
- Source code: https://github.com/cran/centerline
- Date/Publication: 2025-03-16 04:40:02 UTC
- Number of recursive dependencies: 108
Run revdepcheck::cloud_details(, "centerline") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘centerline-Ex.R’ failed The error most likely occurred in:
Name: geom_cnt_text
Title: Plot label or text on centerline with ggplot2
Aliases: geom_cnt_text geom_cnt_label
** Examples
Don't show:
... 24. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 25. │ └─self$draw_panel(...) 26. │ └─geomtextpath (local) draw_panel(...) 27. │ └─geomtextpath:::sf_textgrob(...) 28. └─base::.handleSimpleError(...) 29. └─rlang (local) h(simpleError(msg, call)) 30. └─handlers[1L] 31. └─cli::cli_abort(...) 32. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... 6. └─base::lapply(...) 7. └─ggplot2 (local) FUN(X[[i]], ...) 8. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 9. └─self$draw_panel(...)
- └─geomtextpath (local) draw_panel(...)
- └─geomtextpath:::sf_textgrob(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 245 ] Error: Test failures Execution halted ```
Certara.Xpose.NLME
- Version: 2.0.2
- GitHub: NA
- Source code: https://github.com/cran/Certara.Xpose.NLME
- Date/Publication: 2025-01-28 15:50:10 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "Certara.Xpose.NLME") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘Certara.Xpose.NLME-Ex.R’ failed The error most likely occurred in:
Name: eta_vs_cov
Title: ETAs vs covariate Plot
Aliases: eta_vs_cov
** Examples
eta_vs_cov(xpose::xpdb_ex_pk, ... 4. ├─purrr::map_if(...) 5. │ └─purrr:::where_if(.x, .p) 6. │ └─rlang::is_logical(.p) 7. ├─stringr::str_detect(., "@") 8. │ └─stringr:::check_lengths(string, pattern) 9. │ └─vctrs::vec_size_common(...) 10. └─vctrs:::stop_scalar_type(
<fn>(<ggplt2::>), "string",<env>) 11. └─vctrs:::stop_vctrs(...) 12. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted ```
cheem
- Version: 0.4.0.0
- GitHub: https://github.com/nspyrison/cheem
- Source code: https://github.com/cran/cheem
- Date/Publication: 2023-11-08 21:30:02 UTC
- Number of recursive dependencies: 148
Run revdepcheck::cloud_details(, "cheem") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cheem) -------------------------------------------------------- cheem --- version 0.4.0.0 Please share bugs, suggestions, and feature requests at: https://github.com/nspyrison/cheem/issues/ -------------------------------------------------------- ...
- │ ├─utils::modifyList(x %||% list(), y %||% list(), ...)
- │ │ └─base::stopifnot(is.list(x), is.list(val))
- │ └─x %||% list()
- ├─plotly::ggplotly(...)
- └─plotly:::ggplotly.ggplot(...)
- └─plotly::gg2list(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 8 ] Error: Test failures Execution halted ```
ChemoSpec
- Version: 6.1.11
- GitHub: https://github.com/bryanhanson/ChemoSpec
- Source code: https://github.com/cran/ChemoSpec
- Date/Publication: 2025-04-15 15:00:09 UTC
- Number of recursive dependencies: 160
Run revdepcheck::cloud_details(, "ChemoSpec") for more info
Newly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘ChemoSpec.Rmd’ using rmarkdown
Quitting from ChemoSpec.Rmd:464-468 [load1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Can't find method for generic
&(e1, e2): - e1: - e2: ... Can't find method for generic&(e1, e2): - e1: - e2: --- failed re-building ‘ChemoSpec.Rmd’SUMMARY: processing the following file failed: ‘ChemoSpec.Rmd’
Error: Vignette re-building failed. Execution halted ```
ChemoSpecUtils
- Version: 1.0.5
- GitHub: https://github.com/bryanhanson/ChemoSpecUtils
- Source code: https://github.com/cran/ChemoSpecUtils
- Date/Publication: 2025-04-12 15:30:04 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "ChemoSpecUtils") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘ChemoSpecUtils-Ex.R’ failed The error most likely occurred in:
Name: GraphicsOptions
Title: Graphic Output Options in ChemoSpec and ChemoSpec2D
Aliases: GraphicsOptions
Keywords: utilities
** Examples
... ℹ Adding new coordinate system, which will replace the existing one. Warning:
aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the ChemoSpec package. Please report the issue at https://github.com/bryanhanson/ChemoSpec/issues. Error: Can't find method for generic&(e1, e2): - e1: - e2: Execution halted ```
chillR
- Version: 0.76
- GitHub: NA
- Source code: https://github.com/cran/chillR
- Date/Publication: 2024-11-14 09:40:02 UTC
- Number of recursive dependencies: 133
Run revdepcheck::cloud_details(, "chillR") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘chillR-Ex.R’ failed The error most likely occurred in:
Name: plot_scenarios
Title: Plot historic and future scenarios for climate-related metrics
(ggplot2 version)
Aliases: plot_scenarios
** Examples
...
Plot the climate scenarios
plot_scenarios(climate_scenario_list, metric = 'Chill_Portions', + add_historic = TRUE, size = 2, shape = 3, color = 'blue', + outlier_shape = 12, historic_color = 'skyblue', + group_by = c("Year", "Scenario")) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ```
chronicle
- Version: 0.3
- GitHub: NA
- Source code: https://github.com/cran/chronicle
- Date/Publication: 2021-06-25 05:00:02 UTC
- Number of recursive dependencies: 143
Run revdepcheck::cloud_details(, "chronicle") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘chronicle-Ex.R’ failed The error most likely occurred in:
Name: make_barplot
Title: Create a bar plot from a data frame through ggplotly
Aliases: make_barplot
** Examples
make_barplot(dt = iris, bars = 'Species', value = 'Sepal.Length') Error in pm[[2]] : subscript out of bounds Calls: make_barplot -> -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘chronicle.Rmd’ using rmarkdown
Quitting from chronicle.Rmd:37-67 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'chronicle.Rmd' failed with diagnostics: ... ℹ In index: 1. Caused by error in
pm[[2]]: ! subscript out of bounds --- failed re-building ‘chronicle.Rmd’SUMMARY: processing the following file failed: ‘chronicle.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘DT’ ‘dplyr’ ‘prettydoc’ ‘rmdformats’ ‘skimr’ All declared Imports should be used.
circumplex
- Version: 1.0.0
- GitHub: https://github.com/jmgirard/circumplex
- Source code: https://github.com/cran/circumplex
- Date/Publication: 2024-10-28 04:30:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "circumplex") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(circumplex) > > test_check("circumplex") [ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════ ... [ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ] Deleting unused snapshots: • ssm_plot/many-circle-repel.svg • ssm_plot/many-curve-plots.svg • ssm_plot/measure-contrast-circle-ssm.svg • ssm_plot/measure-contrast-curve-ssm.svg • ssm_plot/single-group-mean-ssm-no-palette.svg • ssm_plot/single-group-mean-ssm-with-labels.svg Error: Test failures Execution halted ```
classmap
- Version: 1.2.4
- GitHub: NA
- Source code: https://github.com/cran/classmap
- Date/Publication: 2025-05-13 22:00:02 UTC
- Number of recursive dependencies: 132
Run revdepcheck::cloud_details(, "classmap") for more info
Newly broken
- checking whether package ‘classmap’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘ggplot2::element’ by ‘e1071::element’ when loading ‘classmap’ See ‘/tmp/workdir/classmap/new/classmap.Rcheck/00install.out’ for details.
In both
- checking data for non-ASCII characters ... NOTE
Note: found 9 marked UTF-8 strings
clifro
- Version: 3.2-5
- GitHub: https://github.com/ropensci/clifro
- Source code: https://github.com/cran/clifro
- Date/Publication: 2021-05-24 05:50:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "clifro") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘test-all.R’ Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > library(clifro) > > test_check("clifro") [ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ]
... • On CRAN (4): 'test-cf_find_station.R:4:3', 'test-cf_last_query.R:4:3', 'test-cf_query.R:4:3', 'test-cf_station.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-windrose.R:15:3'): windrose ────────────────────────────────── tt$labels inherits from
'ggplot2::labels'/'gg'/'S7_object'not'character'.[ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) cf_save_kml.Rd:68: Lost braces 68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for | ^
climwin
- Version: 1.2.31
- GitHub: https://github.com/LiamDBailey/climwin
- Source code: https://github.com/cran/climwin
- Date/Publication: 2025-06-08 16:40:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "climwin") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(climwin) > > test_check("climwin")
| | | 0%...
expected: TRUE ── Failure ('testplotwin.R:15:3'): plotwin produces a graph ──────────────────── attr(test, "class")[1] == "gg" is not TRUEactual: FALSEexpected: TRUE[ FAIL 7 | WARN 761 | SKIP 3 | PASS 790 ] Error: Test failures Execution halted ```
clinDataReview
- Version: 1.6.2
- GitHub: https://github.com/openanalytics/clinDataReview
- Source code: https://github.com/cran/clinDataReview
- Date/Publication: 2025-04-11 22:10:02 UTC
- Number of recursive dependencies: 117
Run revdepcheck::cloud_details(, "clinDataReview") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘clinDataReview-Ex.R’ failed The error most likely occurred in:
Name: scatterplotClinData
Title: Scatterplot of variables of interest for clinical data
visualization.
Aliases: scatterplotClinData
** Examples
... + data = dataPlot, + xVar = "ADY", + yVar = "LBSTRESN", + aesPointVar = list(color = "TRTP", fill = "TRTP"), + aesLineVar = list(group = "USUBJID", color = "TRTP"), + labelVars = labelVars + ) Error in pm[[2]] : subscript out of bounds Calls: scatterplotClinData -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(clinDataReview) > > test_check("clinDataReview") adding: report.html (deflated 63%) adding: report_dependencies172d6f8f416/ (stored 0%) adding: report_dependencies172d6f8f416/file172d481ba5e0.html (deflated 8%) ... Backtrace: ▆
- └─clinDataReview::scatterplotClinData(...) at test_scatterplotClinData.R:1001:3
- ├─plotly::ggplotly(p = gg, width = width, height = height, tooltip = if (!is.null(hoverVars)) "text")
- └─plotly:::ggplotly.ggplot(...)
- └─plotly::gg2list(...)
[ FAIL 31 | WARN 0 | SKIP 31 | PASS 466 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘clinDataReview-dataPreprocessing.Rmd’ using rmarkdown --- finished re-building ‘clinDataReview-dataPreprocessing.Rmd’
--- re-building ‘clinDataReview-dataVisualization.Rmd’ using rmarkdown
Quitting from clinDataReview-dataVisualization.Rmd:169-211 [timeProfiles] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ... --- failed re-building ‘clinDataReview-dataVisualization.Rmd’--- re-building ‘clinDataReview-reporting.Rmd’ using rmarkdown --- finished re-building ‘clinDataReview-reporting.Rmd’
SUMMARY: processing the following file failed: ‘clinDataReview-dataVisualization.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb sub-directories of 1Mb or more: doc 4.3Mb
clinUtils
- Version: 0.2.0
- GitHub: https://github.com/openanalytics/clinUtils
- Source code: https://github.com/cran/clinUtils
- Date/Publication: 2024-05-17 14:50:06 UTC
- Number of recursive dependencies: 107
Run revdepcheck::cloud_details(, "clinUtils") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘clinUtils-vignette.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 7.7Mb sub-directories of 1Mb or more: doc 6.5Mb
clockSim
- Version: 0.1.2
- GitHub: https://github.com/yeyuan98/clockSim
- Source code: https://github.com/cran/clockSim
- Date/Publication: 2025-04-22 20:10:01 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "clockSim") for more info
Newly broken
- checking whether package ‘clockSim’ can be installed ... WARNING
Found the following significant warnings: Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. See ‘/tmp/workdir/clockSim/new/clockSim.Rcheck/00install.out’ for details.
clustcurv
- Version: 2.0.2
- GitHub: https://github.com/noramvillanueva/clustcurv
- Source code: https://github.com/cran/clustcurv
- Date/Publication: 2024-10-25 08:20:07 UTC
- Number of recursive dependencies: 106
Run revdepcheck::cloud_details(, "clustcurv") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘clustcurv.Rmd’ using rmarkdown
Quitting from clustcurv.Rmd:92-94 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of boundsBacktrace: ...
Error: processing vignette 'clustcurv.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘clustcurv.Rmd’
SUMMARY: processing the following file failed: ‘clustcurv.Rmd’
Error: Vignette re-building failed. Execution halted ```
cmcR
- Version: 0.1.11
- GitHub: NA
- Source code: https://github.com/cran/cmcR
- Date/Publication: 2022-12-10 14:00:02 UTC
- Number of recursive dependencies: 120
Run revdepcheck::cloud_details(, "cmcR") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cmcR) > > test_check("cmcR",reporter = SummaryReporter) adding: bindata/ (stored 0%) adding: bindata/data.bin (deflated 58%) adding: main.xml (deflated 62%) ... ── 2. Failure ('test-diagnosticTools.R:104:3'): diagnosticTools functions work a all(unlist(purrr::map(cmcPlt_list, ~class(.) == c("gg", "ggplot")))) is not TRUE
actual: FALSEexpected: TRUE══ DONE ════════════════════════════════════════════════════════════════════════ I believe in you! Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.5Mb sub-directories of 1Mb or more: data 2.5Mb doc 2.3Mb
cnmap
- Version: 0.1.0
- GitHub: https://github.com/PanfengZhang/cnmap
- Source code: https://github.com/cran/cnmap
- Date/Publication: 2024-04-02 12:42:06 UTC
- Number of recursive dependencies: 58
Run revdepcheck::cloud_details(, "cnmap") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘cnmap-Ex.R’ failed The error most likely occurred in:
Name: getMap
Title: China Map Data from AutoNavi Map
Aliases: getMap
** Examples
library(cnmap)
map1 <- getMap(code = "110000") # get the map data of Beijing City Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : package tibble not available: install first? Calls: getMap ... st_read -> st_read.character -> process_cpl_read_ogr Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Introduction.Rmd’ using rmarkdown
Quitting from Introduction.Rmd:28-35 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
process_cpl_read_ogr(): ! package tibble not available: install first?Backtrace: ...
Error: processing vignette 'Introduction.Rmd' failed with diagnostics: package tibble not available: install first? --- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed: ‘Introduction.Rmd’
Error: Vignette re-building failed. Execution halted ```
CNVreg
- Version: 1.0
- GitHub: NA
- Source code: https://github.com/cran/CNVreg
- Date/Publication: 2025-03-10 16:50:21 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "CNVreg") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘CNVReg_vig.Rmd’ using rmarkdown
Quitting from CNVReg_vig.Rmd:322-378 [unnamed-chunk-17] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Can't find method for generic
&(e1, e2): - e1: - e2: ... Can't find method for generic&(e1, e2): - e1: - e2: --- failed re-building ‘CNVReg_vig.Rmd’SUMMARY: processing the following file failed: ‘CNVReg_vig.Rmd’
Error: Vignette re-building failed. Execution halted ```
cocktailApp
- Version: 0.2.3
- GitHub: https://github.com/shabbychef/cocktailApp
- Source code: https://github.com/cran/cocktailApp
- Date/Publication: 2023-07-19 13:40:09 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "cocktailApp") for more info
Newly broken
- checking whether package ‘cocktailApp’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details.
Newly fixed
- checking data for non-ASCII characters ... NOTE
Note: found 14729 marked UTF-8 strings
Installation
Devel
* installing *source* package ‘cocktailApp’ ...
** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: <ggplot2::element_line> object properties are invalid:
- @lineend must be <character> or <NULL>, not S3<arrow>
Execution halted
ERROR: lazy loading failed for package ‘cocktailApp’
* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’
CRAN
* installing *source* package ‘cocktailApp’ ...
** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cocktailApp)
coda.plot
- Version: 0.1.9
- GitHub: NA
- Source code: https://github.com/cran/coda.plot
- Date/Publication: 2025-04-20 21:30:02 UTC
- Number of recursive dependencies: 41
Run revdepcheck::cloud_details(, "coda.plot") for more info
Newly broken
- checking whether package ‘coda.plot’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘coda.plot’ ...
** package ‘coda.plot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: <ggplot2::element_line> object properties are invalid:
- @lineend must be <character> or <NULL>, not S3<arrow>
Execution halted
ERROR: lazy loading failed for package ‘coda.plot’
* removing ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/coda.plot’
CRAN
* installing *source* package ‘coda.plot’ ...
** package ‘coda.plot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coda.plot)
CohortPlat
- Version: 1.0.5
- GitHub: NA
- Source code: https://github.com/cran/CohortPlat
- Date/Publication: 2022-02-14 09:30:02 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "CohortPlat") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘CohortPlat-Ex.R’ failed The error most likely occurred in:
Name: plot_trial
Title: Plots the cohort trial study overview given stage data.
Aliases: plot_trial
** Examples
... + stage_data = stage_data, cohort_random = cohort_random, cohorts_max = cohorts_max, + sr_drugs_pos = sr_drugs_pos, target_rr = target_rr, sharing_type = sharing_type, + safety_prob = safety_prob, Bayes_Sup = Bayes_Sup, prob_rr_transform = prob_rr_transform, + cohort_offset = cohort_offset, Bayes_Fut = Bayes_Fut, sr_first_pos = sr_first_pos + )
plot_trial(res_list, unit = "n") Error in pm[[2]] : subscript out of bounds Calls: plot_trial -> -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘my-vignette.Rmd’ using rmarkdown
Quitting from my-vignette.Rmd:1042-1073 [unnamed-chunk-20] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of boundsBacktrace: ...
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘my-vignette.Rmd’
SUMMARY: processing the following file failed: ‘my-vignette.Rmd’
Error: Vignette re-building failed. Execution halted ```
colorrepel
- Version: 0.4.1
- GitHub: https://github.com/raysinensis/color_repel
- Source code: https://github.com/cran/colorrepel
- Date/Publication: 2025-01-19 04:50:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "colorrepel") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘colorrepel-Ex.R’ failed The error most likely occurred in:
Name: ggplotly_background
Title: Prepare ggplot object to ggplotly-compatible layer and image
layer
Aliases: ggplotly_background
** Examples
a <- ggplot2::ggplot(ggplot2::mpg, ggplot2::aes(displ, hwy)) + + ggplot2::geom_point(ggplot2::aes(color = as.factor(cyl))) new_colors <- color_repel(a) b <- ggplotly_background(a, filename = NULL) Error in pm[[2]] : subscript out of bounds Calls: ggplotly_background -> -> ggplotly.ggplot -> gg2list Execution halted ```
conquestr
- Version: 1.5.1
- GitHub: NA
- Source code: https://github.com/cran/conquestr
- Date/Publication: 2025-05-18 07:50:02 UTC
- Number of recursive dependencies: 77
Run revdepcheck::cloud_details(, "conquestr") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(conquestr) > > test_check("conquestr") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ConQuestRout.R:10:3'): Rout file is of correct type ──────────
myRoutPlothas type 'object', not 'list'.[ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ] Error: Test failures Execution halted ```
constructive
- Version: 1.1.0
- GitHub: https://github.com/cynkra/constructive
- Source code: https://github.com/cran/constructive
- Date/Publication: 2025-01-10 14:10:01 UTC
- Number of recursive dependencies: 111
Run revdepcheck::cloud_details(, "constructive") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(constructive) > > test_check("constructive") [ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ]
══ Skipped tests (113) ═════════════════════════════════════════════════════════ ... 13. │ └─constructive:::strip_theme(x) 14. │ └─constructive:::
$<-(*tmp*, size, value = NULL) 15. │ └─constructive:::[[<-(...) 16. └─rlang (local)<fn>(<ntSbsttE>) 17. └─handlers[1L] 18. └─rlang::abort(...)[ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ] Error: Test failures Execution halted ```
contsurvplot
- Version: 0.2.1
- GitHub: https://github.com/RobinDenz1/contsurvplot
- Source code: https://github.com/cran/contsurvplot
- Date/Publication: 2023-08-15 08:00:03 UTC
- Number of recursive dependencies: 156
Run revdepcheck::cloud_details(, "contsurvplot") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(contsurvplot) Please cite as:
Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630.
library(survival) library(testthat)
... • plot_surv_contour/plot-change-horizon.svg • plot_surv_contour/plot-cif.svg • plot_surv_contour/plot-custom-colors.svg • plot_surv_contour/plot-defaults.svg • plot_surv_contour/plot-lots-of-stuff.svg • plot_surv_contour/plot-panel-border-axis-dist.svg • plot_surv_contour/plot-with-group.svg • plot_surv_heatmap/plot-contour-lines.svg Error: Test failures Execution halted ```
CoreMicrobiomeR
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/CoreMicrobiomeR
- Date/Publication: 2024-04-03 20:03:02 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "CoreMicrobiomeR") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘CoreMicrobiomeR-Ex.R’ failed The error most likely occurred in:
Name: group_bar_plots
Title: Grouped Bar Plots Based on Sample Size
Aliases: group_bar_plots
** Examples
To run input data
... + top_percentage = 10 # Adjust the percentage as needed for core/non-core OTUs + ) Warning encountered during diversity analysis:you have empty rows: their dissimilarities may be meaningless in method “bray”
To run grouped bar plot function
plot_group_bar <- group_bar_plots(core_1$final_otu_table_bef_filter, + core_1$final_otu_aft_filter, 10) Error in pm[[2]] : subscript out of bounds Calls: group_bar_plots -> -> ggplotly.ggplot -> gg2list Execution halted ```
correlationfunnel
- Version: 0.2.0
- GitHub: https://github.com/business-science/correlationfunnel
- Source code: https://github.com/cran/correlationfunnel
- Date/Publication: 2020-06-09 04:40:03 UTC
- Number of recursive dependencies: 113
Run revdepcheck::cloud_details(, "correlationfunnel") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
... ▆ 1. ├─correlationfunnel::plot_correlation_funnel(...) at test-plot_correlation_funnel.R:23:1 2. └─correlationfunnel:::plot_correlation_funnel.data.frame(...) 3. ├─plotly::ggplotly(g, tooltip = "text") 4. └─plotly:::ggplotly.ggplot(g, tooltip = "text") 5. └─plotly::gg2list(...)
[ FAIL 1 | WARN 3 | SKIP 0 | PASS 17 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘utils’ All declared Imports should be used.
corrViz
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/corrViz
- Date/Publication: 2023-06-30 11:40:07 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "corrViz") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘corrViz-Ex.R’ failed The error most likely occurred in:
Name: animSolar
Title: animSolar
Aliases: animSolar
** Examples
cm <- cor(mtcars) ... All aesthetics have length 1, but the data has 250 rows. ℹ Please consider using
annotate()or provide this layer with data containing a single row. Warning in geom_text(data = solar_system, aes(x = 0, y = 0, label = sun), : All aesthetics have length 1, but the data has 250 rows. ℹ Please consider usingannotate()or provide this layer with data containing a single row. Error in pm[[2]] : subscript out of bounds Calls: animSolar -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘corrViz.Rmd’ using rmarkdown
Quitting from corrViz.Rmd:75-81 [heatmap] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of boundsBacktrace: ...
Error: processing vignette 'corrViz.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘corrViz.Rmd’
SUMMARY: processing the following file failed: ‘corrViz.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 7.2Mb sub-directories of 1Mb or more: doc 6.7Mb
CoSMoS
- Version: 2.1.0
- GitHub: https://github.com/TycheLab/CoSMoS
- Source code: https://github.com/cran/CoSMoS
- Date/Publication: 2021-05-29 23:20:08 UTC
- Number of recursive dependencies: 77
Run revdepcheck::cloud_details(, "CoSMoS") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘vignette.Rmd’ using rmarkdown
countfitteR
- Version: 1.4
- GitHub: https://github.com/BioGenies/countfitteR
- Source code: https://github.com/cran/countfitteR
- Date/Publication: 2020-09-30 21:30:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "countfitteR") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(countfitteR) > > test_check("countfitteR") [ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ]
... 1. ├─testthat::expect_equal(p$labels[[1]], "x") at testing.R:45:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─p$labels[[1]] 5. ├─S7:::
[[.S7_object(p$labels, 1) 6. └─base::NextMethod()[ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
countries
- Version: 1.2.1
- GitHub: https://github.com/fbellelli/countries
- Source code: https://github.com/cran/countries
- Date/Publication: 2025-02-22 14:10:02 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "countries") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(countries) > > test_check("countries")
In total 1 unique country names were provided 1/1 have been matched with EXACT matching ...
expected[2:2]: "ggplot" ── Failure ('test_function_output.R:319:3'): output from quick_map() are as expected ── class(quick_map(example, "test", col_na = "black")) (actual) not equal to c("gg", "ggplot") (expected).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 9 | WARN 0 | SKIP 2 | PASS 137 ] Error: Test failures Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 9044 marked UTF-8 strings
covidcast
- Version: 0.5.2
- GitHub: https://github.com/cmu-delphi/covidcast
- Source code: https://github.com/cran/covidcast
- Date/Publication: 2023-07-12 23:40:06 UTC
- Number of recursive dependencies: 89
Run revdepcheck::cloud_details(, "covidcast") for more info
Newly broken
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checking tests ... ERROR
Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(covidcast) We encourage COVIDcast API users to register on our mailing list: https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api We'll send announcements about new data sources, package updates, server maintenance, and new features. > ... • plot/default-county-choropleth.svg • plot/default-hrr-choropleth-with-include.svg • plot/default-msa-choropleth-with-include.svg • plot/default-state-choropleth-with-include.svg • plot/default-state-choropleth-with-range.svg • plot/state-choropleth-with-no-metadata.svg • plot/state-line-graph-with-range.svg • plot/state-line-graph-with-stderrs.svg Error: Test failures Execution halted -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘correlation-utils.Rmd’ using rmarkdown --- finished re-building ‘correlation-utils.Rmd’
--- re-building ‘covidcast.Rmd’ using rmarkdown ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 20 marked UTF-8 strings
cowplot
- Version: 1.1.3
- GitHub: https://github.com/wilkelab/cowplot
- Source code: https://github.com/cran/cowplot
- Date/Publication: 2024-01-22 23:22:51 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "cowplot") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cowplot) > > test_check("cowplot") [ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════ ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_ggdraw.R:7:3'): basic ggdraw usage ─────────────────────────── methods::is(g) not equal to "gg". 1/1 mismatches x[1]: "ggplot2::ggplot" y[1]: "gg"
[ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ] Error: Test failures Execution halted ```
Coxmos
- Version: 1.1.3
- GitHub: https://github.com/BiostatOmics/Coxmos
- Source code: https://github.com/cran/Coxmos
- Date/Publication: 2025-06-02 18:02:02 UTC
- Number of recursive dependencies: 201
Run revdepcheck::cloud_details(, "Coxmos") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘Coxmos-Ex.R’ failed The error most likely occurred in:
Name: plot_evaluation
Title: plot_evaluation
Aliases: plot_evaluation
** Examples
data("X_proteomic") ... Y_test <- Y_proteomic[-index_train,] coxEN.model <- coxEN(X_train, Y_train, x.center = TRUE, x.scale = TRUE) Warning: from glmnet C++ code (error code -10013); Number of nonzero coefficients along the path exceeds pmax=7 at 13th lambda value; solutions for larger lambdas returned eval_results <- eval_Coxmos_models(lst_models = list("coxEN" = coxEN.model), X_test = X_test, + Y_test = Y_test) plot_eval_results <- plot_evaluation(eval_results) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 7.4Mb sub-directories of 1Mb or more: R 1.5Mb data 2.5Mb doc 2.8Mb
cry
- Version: 0.5.1
- GitHub: NA
- Source code: https://github.com/cran/cry
- Date/Publication: 2022-10-10 08:00:05 UTC
- Number of recursive dependencies: 50
Run revdepcheck::cloud_details(, "cry") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘cry-Ex.R’ failed The error most likely occurred in:
Name: plot_SHELX
Title: Plot SHELXC log files
Aliases: plot_SHELX
** Examples
datadir <- system.file("extdata",package="cry")
SHELXC
shelxc_log <- file.path(datadir,"shelxc.log") shelxc <- read_SHELX_log(shelxc_log) plot_shelxc <- plot_SHELX(filename = shelxc, var = shelxc$I_sig, + type = "shelxc", title_chart = "SHELXC") Error in rep(yes, length.out = len) : attempt to replicate an object of type 'object' Calls: plot_SHELX -> ifelse -> ifelse -> ifelse Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘MTZ.Rmd’ using rmarkdown
In both
- checking Rd files ... NOTE
checkRd: (-1) calculate_cell_volume.Rd:16: Lost braces; missing escapes or markup? 16 | V A real number. The volume (in angstroms^3 or angstroms^{-3}) | ^
ctrialsgov
- Version: 0.2.5
- GitHub: NA
- Source code: https://github.com/cran/ctrialsgov
- Date/Publication: 2021-10-18 16:00:02 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "ctrialsgov") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ctrialsgov) > > test_check("ctrialsgov") [NCT04553939] ible Local Advanved |Bladder| Cancer [NCT03517995] of Sulforaphane in |Bladder| Cancer Chemoprevent [NCT04210479] Comparison of |Bladder| Filling vs. Non-Fil ... ▆
- ├─ctrialsgov::ctgov_to_plotly(p) at test-plot.R:12:3
- └─ctrialsgov:::ctgov_to_plotly.ctgov_bar_plot(p)
- ├─plotly::ggplotly(p, tooltip = "text")
- └─plotly:::ggplotly.ggplot(p, tooltip = "text")
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 43 ] Error: Test failures Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 1350 marked UTF-8 strings
cubble
- Version: 1.0.0
- GitHub: https://github.com/huizezhang-sherry/cubble
- Source code: https://github.com/cran/cubble
- Date/Publication: 2024-08-27 15:20:02 UTC
- Number of recursive dependencies: 130
Run revdepcheck::cloud_details(, "cubble") for more info
Newly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘cb1class.Rmd’ using rmarkdown --- finished re-building ‘cb1class.Rmd’
--- re-building ‘cb2create.Rmd’ using rmarkdown --- finished re-building ‘cb2create.Rmd’
--- re-building ‘cb3tsibblesf.Rmd’ using rmarkdown --- finished re-building ‘cb3tsibblesf.Rmd’
--- re-building ‘cb4glyph.Rmd’ using rmarkdown ```
In both
- checking installed package size ... NOTE
installed size is 8.6Mb sub-directories of 1Mb or more: data 6.0Mb doc 1.4Mb
cutpointr
- Version: 1.2.0
- GitHub: https://github.com/thie1e/cutpointr
- Source code: https://github.com/cran/cutpointr
- Date/Publication: 2024-12-10 22:50:02 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "cutpointr") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cutpointr) > > test_check("cutpointr") [ FAIL 105 | WARN 14 | SKIP 0 | PASS 337 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... class(tempplot5) not identical to c("gg", "ggplot"). Lengths differ: 5 is not 2 Backtrace: ▆ 1. └─cutpointr (local) test_ggplot_functions(cp, do_plot_metric = FALSE) at test-cutpointr.R:1156:5 2. └─testthat::expect_identical(class(tempplot5), c("gg", "ggplot")) at test-cutpointr.R:22:5
[ FAIL 105 | WARN 14 | SKIP 0 | PASS 337 ] Error: Test failures Execution halted ```
cvms
- Version: 1.7.0
- GitHub: https://github.com/ludvigolsen/cvms
- Source code: https://github.com/cran/cvms
- Date/Publication: 2025-03-07 11:30:07 UTC
- Number of recursive dependencies: 152
Run revdepcheck::cloud_details(, "cvms") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cvms) > > if (require("xpectr")) {
- test_check("cvms")
- }
Loading required package: xpectr
...
names for target but not for current
── Failure ('test_plotting_functions.R:359:3'): plot_confusion_matrix() with sum tiles, class order, and intensity_by percentage ──
labelsnot equal to list(...). Attributes: < names for target but not for current > Attributes: < Length mismatch: comparison on first 0 components > Length mismatch: comparison on first 4 components
[ FAIL 15 | WARN 0 | SKIP 71 | PASS 3602 ] Error: Test failures Execution halted ```
cylcop
- Version: 0.2.0
- GitHub: https://github.com/r-lib/devtools
- Source code: https://github.com/cran/cylcop
- Date/Publication: 2022-10-29 22:00:21 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "cylcop") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘cylcop-Ex.R’ failed The error most likely occurred in:
Name: plot_circ_hist
Title: Circular Histogram of Turn Angles
Aliases: plot_circ_hist
** Examples
set.seed(123) ... 23. │ └─l$compute_geom_2(d, theme = plot@theme) 24. │ └─ggplot2 (local) compute_geom_2(..., self = self) 25. │ └─self$geom$use_defaults(...) 26. │ └─ggplot2 (local) use_defaults(..., self = self) 27. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) 28. │ └─vctrs::list_sizes(x) 29. └─vctrs:::stop_scalar_type(
<fn>(<expression>), "x$label",<env>) 30. └─vctrs:::stop_vctrs(...) 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) gammamix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gammamix.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gammamix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gammamix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) joint.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) joint.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) joint.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lnormmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lnormmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lnormmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly ... checkRd: (-1) vonmisesmix.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vonmisesmix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weibullmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weibullmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weibullmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weibullmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) wrappedcauchy.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) wrappedcauchy.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) wrappedcauchy.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) wrappedcauchy.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
D2MCS
- Version: 1.0.1
- GitHub: https://github.com/drordas/D2MCS
- Source code: https://github.com/cran/D2MCS
- Date/Publication: 2022-08-23 11:40:02 UTC
- Number of recursive dependencies: 178
Run revdepcheck::cloud_details(, "D2MCS") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘test_all.R’ Running the tests in ‘tests/test_all.R’ failed. Complete output: > testthat::test_check("D2MCS") Loading required package: D2MCS [ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════ • On CRAN (2): 'test_D2MCS.R:129:3', 'test_D2MCS.R:213:3' • {ranger} is not installed (13): 'test_D2MCS.R:411:3', ... ── Failure ('test_clustering.strategies.TypeBasedStrategy.R:226:3'): TypeBasedStrategy works ── c("gg", "ggplot") not equal to class(strategyNoReal$plot()). Lengths differ: 2 is not 5 ── Failure ('test_clustering.strategies.TypeBasedStrategy.R:234:3'): TypeBasedStrategy works ── c("gg", "ggplot") not equal to class(strategyNoBinary$plot()). Lengths differ: 2 is not 5
[ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ] Error: Test failures Execution halted ```
dabestr
- Version: 2025.3.14
- GitHub: https://github.com/ACCLAB/dabestr
- Source code: https://github.com/cran/dabestr
- Date/Publication: 2025-02-26 12:50:02 UTC
- Number of recursive dependencies: 82
Run revdepcheck::cloud_details(, "dabestr") for more info
Newly broken
- checking tests ... ERROR
Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... • 001_plotter/two-groups-unpaired-mean-diff-colour-float-true.svg • 001_plotter/two-groups-unpaired-mean-diff-float-false.svg • 001_plotter/two-groups-unpaired-mean-diff-float-true.svg • 002_forest_plot/deltadelta-forest-plot-mean-diff.svg • 002_forest_plot/deltadelta-forest-plot-with-plot-kwargs.svg • 002_forest_plot/minimeta-forest-plot-mean-diff.svg • 002_forest_plot/minimeta-forest-plot-median-diff.svg • 002_forest_plot/minimeta-forest-plot-with-plot-kwargs.svg Error: Test failures Execution halted
daiquiri
- Version: 1.1.1
- GitHub: https://github.com/ropensci/daiquiri
- Source code: https://github.com/cran/daiquiri
- Date/Publication: 2023-07-18 16:50:09 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "daiquiri") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(daiquiri) > > test_check("daiquiri")
Quitting from report_htmldoc.Rmd:466-528 [daiquiri-individual-fields] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ... 36. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 4 | WARN 0 | SKIP 8 | PASS 472 ] Deleting unused snapshots: • aggregate_data/test_[ALL_FIELDS_COMBINED].csv • aggregate_data/test_[DUPLICATES].csv • aggregate_data/test_col1.csv • aggregate_data/test_col2.csv Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘daiquiri.Rmd’ using rmarkdown
DAISIEprep
- Version: 1.0.0
- GitHub: https://github.com/joshwlambert/DAISIEprep
- Source code: https://github.com/cran/DAISIEprep
- Date/Publication: 2024-12-18 00:20:02 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "DAISIEprep") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]
══ Skipped tests (14) ══════════════════════════════════════════════════════════ ... ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ───
plot_phylod(phylod = phylod, node_pies = FALSE)produced warnings. ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──plot_phylod(phylod = phylod, node_pies = TRUE)produced warnings. ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──plot_phylod(phylod = phylod, node_pies = TRUE)produced warnings.[ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] Error: Test failures Execution halted ```
daltoolbox
- Version: 1.2.707
- GitHub: https://github.com/cefet-rj-dal/daltoolbox
- Source code: https://github.com/cran/daltoolbox
- Date/Publication: 2025-05-13 06:20:13 UTC
- Number of recursive dependencies: 99
Run revdepcheck::cloud_details(, "daltoolbox") for more info
Newly broken
- checking whether package ‘daltoolbox’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘daltoolbox’ See ‘/tmp/workdir/daltoolbox/new/daltoolbox.Rcheck/00install.out’ for details.
dams
- Version: 0.3.0
- GitHub: https://github.com/jsta/dams
- Source code: https://github.com/cran/dams
- Date/Publication: 2020-05-20 16:00:03 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "dams") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘dams.Rmd’ using rmarkdown
In both
- checking data for non-ASCII characters ... NOTE
Note: found 5 marked UTF-8 strings
Deducer
- Version: 0.9-0
- GitHub: NA
- Source code: https://github.com/cran/Deducer
- Date/Publication: 2025-05-07 13:50:06 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "Deducer") for more info
Newly broken
- checking whether package ‘Deducer’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘Deducer’ See ‘/tmp/workdir/Deducer/new/Deducer.Rcheck/00install.out’ for details.
deeptime
- Version: 2.1.0
- GitHub: https://github.com/willgearty/deeptime
- Source code: https://github.com/cran/deeptime
- Date/Publication: 2024-10-25 23:30:02 UTC
- Number of recursive dependencies: 195
Run revdepcheck::cloud_details(, "deeptime") for more info
Newly broken
- checking whether package ‘deeptime’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘deeptime’ ...
** package ‘deeptime’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
...
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘deeptime’:
.onLoad failed in loadNamespace() for 'deeptime', details:
call: NULL
error: <ggplot2::element_text> object properties are invalid:
- @hjust must be <NULL>, <integer>, or <double>, not <logical>
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/deeptime’
CRAN
* installing *source* package ‘deeptime’ ...
** package ‘deeptime’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deeptime)
dendextend
- Version: 1.19.0
- GitHub: https://github.com/talgalili/dendextend
- Source code: https://github.com/cran/dendextend
- Date/Publication: 2024-11-15 10:40:06 UTC
- Number of recursive dependencies: 128
Run revdepcheck::cloud_details(, "dendextend") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > > library(dendextend)
Welcome to dendextend version 1.19.0 Type citation('dendextend') for how to cite the package. ... [ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ggdend.R:168:4'): ggplot doesn't have warnings for dendrograms ── names(ggplot_build(g)) not identical to c("data", "layout", "plot"). target is NULL, current is character
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ] Error: Test failures Execution halted ```
In both
-
checking package dependencies ... NOTE
Packages which this enhances but not available for checking: 'ggdendro', 'dendroextras', 'Hmisc', 'WGCNA', 'moduleColor', 'distory', 'phangorn', 'zoo' -
checking installed package size ... NOTE
installed size is 6.9Mb sub-directories of 1Mb or more: doc 5.8Mb -
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘WGCNA’, ‘dendroextras’, ‘moduleColor’, ‘distory’, ‘phangorn’, ‘ggdendro’, ‘zoo’
densityratio
- Version: 0.2.0
- GitHub: https://github.com/thomvolker/densityratio
- Source code: https://github.com/cran/densityratio
- Date/Publication: 2025-05-19 13:30:05 UTC
- Number of recursive dependencies: 64
Run revdepcheck::cloud_details(, "densityratio") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... ── Failure ('test-ulsif.R:78:3'): multidimensional ULSIF estimation, prediction works ── plot_univariate(...) has type 'object', not 'list'. ── Failure ('test-ulsif.R:83:3'): multidimensional ULSIF estimation, prediction works ── plot_univariate(...) has type 'object', not 'list'. ── Failure ('test-lhss.R:29:3'): multidimensional lhss estimation, prediction and plotting works ── suppressWarnings(plot(dr)) has type 'object', not 'list'.
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 270 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 11.6Mb sub-directories of 1Mb or more: data 1.5Mb libs 8.9Mb
diceR
- Version: 3.0.0
- GitHub: https://github.com/AlineTalhouk/diceR
- Source code: https://github.com/cran/diceR
- Date/Publication: 2025-02-05 09:40:01 UTC
- Number of recursive dependencies: 151
Run revdepcheck::cloud_details(, "diceR") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-graphs.R:18:3'): graph_cdf object can have added/modified ggplot layers ── isTRUE(all.equal(p1, p2)) is not FALSE
actual: TRUEexpected: FALSE[ FAIL 1 | WARN 0 | SKIP 0 | PASS 113 ] Error: Test failures Execution halted ```
DImodelsVis
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/DImodelsVis
- Date/Publication: 2024-02-26 14:10:15 UTC
- Number of recursive dependencies: 112
Run revdepcheck::cloud_details(, "DImodelsVis") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘DImodelsVis-Ex.R’ failed The error most likely occurred in:
Name: conditional_ternary
Title: Conditional ternary diagrams
Aliases: conditional_ternary
** Examples
library(DImodels) ... 14. │ └─base::withCallingHandlers(...) 15. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 16. └─l$compute_position(d, layout) 17. └─ggplot2 (local) compute_position(..., self = self) 18. └─self$position$use_defaults(data, self$aes_params) 19. └─ggplot2 (local) use_defaults(..., self = self) 20. └─ggplot2:::check_aesthetics(new, nrow(data)) 21. └─cli::cli_abort(...) 22. └─rlang::abort(...) Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘DImodelsVis-with-complex-models.Rmd’ using rmarkdown
directlabels
- Version: 2025.5.20
- GitHub: https://github.com/tdhock/directlabels
- Source code: https://github.com/cran/directlabels
- Date/Publication: 2025-05-20 10:50:02 UTC
- Number of recursive dependencies: 79
Run revdepcheck::cloud_details(, "directlabels") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘examples.Rmd’ using knitr
DiSCos
- Version: 0.1.1
- GitHub: https://github.com/Davidvandijcke/DiSCos
- Source code: https://github.com/cran/DiSCos
- Date/Publication: 2024-07-23 03:30:03 UTC
- Number of recursive dependencies: 118
Run revdepcheck::cloud_details(, "DiSCos") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...expected`: TRUE ── Failure ('test-DiSCoTEA.R:142:3'): cdfDiff works ──────────────────────────── typeof(discot$plot) == "list" is not TRUEactual: FALSEexpected: TRUE[ FAIL 8 | WARN 2 | SKIP 1 | PASS 107 ] Error: Test failures Execution halted ```
distributions3
- Version: 0.2.2
- GitHub: https://github.com/alexpghayes/distributions3
- Source code: https://github.com/cran/distributions3
- Date/Publication: 2024-09-16 16:20:02 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "distributions3") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(distributions3)
Attaching package: 'distributions3'
The following object is masked from 'package:stats':
...
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot.R:50:3'): ggplot2 implementation works ──────────────────
print(gg1)produced warnings. ── Failure ('test-plot.R:56:3'): ggplot2 implementation works ──────────────────print(gg3)produced warnings.[ FAIL 2 | WARN 14 | SKIP 0 | PASS 2766 ] Error: Test failures Execution halted ```
dittoViz
- Version: 1.0.3
- GitHub: https://github.com/dtm2451/dittoViz
- Source code: https://github.com/cran/dittoViz
- Date/Publication: 2025-02-25 18:30:02 UTC
- Number of recursive dependencies: 95
Run revdepcheck::cloud_details(, "dittoViz") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘dittoViz-Ex.R’ failed The error most likely occurred in:
Name: barPlot
Title: Outputs a stacked bar plot to show the percent composition of
samples, groups, clusters, or other groupings
Aliases: barPlot
** Examples
... 15 3 D 12 32 0.3750000 16 4 D 8 32 0.2500000
through hovering the cursor over the relevant parts of the plot
if (requireNamespace("plotly", quietly = TRUE)) { + barPlot(example_df, "clustering", group.by = "groups", + do.hover = TRUE) + } Error in pm[[2]] : subscript out of bounds Calls: barPlot -> -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dittoViz) Loading required package: ggplot2 > test_check("dittoViz") Picking joint bandwidth of 11.2 Picking joint bandwidth of 11.2 Picking joint bandwidth of 11.2 ... 6. └─dittoViz:::.yPlot_add_data_y_direction(...) 7. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles) 8. └─ggplot2:::check_numeric(draw_quantiles) 9. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
- └─ggplot2:::stop_input_type(...)
- └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 47 | WARN 19 | SKIP 0 | PASS 199 ] Error: Test failures Execution halted ```
dndR
- Version: 3.0.0
- GitHub: https://github.com/njlyon0/dndR
- Source code: https://github.com/cran/dndR
- Date/Publication: 2025-04-02 18:00:02 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "dndR") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...expected[2:2]: "ggplot" ── Failure ('test-probability_plot.R:22:3'): Outputs are as expected ─────────── class(my_plot) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 2 | WARN 0 | SKIP 0 | PASS 102 ] Error: Test failures Execution halted ```
duke
- Version: 0.0.3
- GitHub: https://github.com/aidangildea/duke
- Source code: https://github.com/cran/duke
- Date/Publication: 2023-12-15 21:50:16 UTC
- Number of recursive dependencies: 85
Run revdepcheck::cloud_details(, "duke") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...
- │ └─testthat:::expect_condition_matching(...)
- │ └─testthat:::quasi_capture(...)
- │ ├─testthat (local) .capture(...)
- │ │ └─base::withCallingHandlers(...)
- │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
- └─testthat::expect_equal(ggplot2::layer_data(p3)$fill[9], "#B5B5B5")
[ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘duke.Rmd’ using rmarkdown
easyalluvial
- Version: 0.3.2
- GitHub: https://github.com/erblast/easyalluvial
- Source code: https://github.com/cran/easyalluvial
- Date/Publication: 2023-12-07 13:40:06 UTC
- Number of recursive dependencies: 148
Run revdepcheck::cloud_details(, "easyalluvial") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(easyalluvial) > > test_check("easyalluvial") [ FAIL 3 | WARN 6 | SKIP 18 | PASS 41 ]
══ Skipped tests (18) ══════════════════════════════════════════════════════════ ... • plot_marginal_histograms/mod-num-num.svg • plot_marginal_histograms/mod-num-pred-train.svg • plot_marginal_histograms/plot-hist-long-cat-fill.svg • plot_marginal_histograms/plot-hist-long-cat.svg • plot_marginal_histograms/plot-hist-long-num-has-fill.svg • plot_marginal_histograms/plot-hist-long-num-is-fill.svg • plot_marginal_histograms/plot-hist-long-num.svg • plot_marginal_histograms/plot-hist-wide-num.svg Error: Test failures Execution halted ```
easysurv
- Version: 2.0.1
- GitHub: https://github.com/Maple-Health-Group/easysurv
- Source code: https://github.com/cran/easysurv
- Date/Publication: 2024-06-21 10:30:06 UTC
- Number of recursive dependencies: 152
Run revdepcheck::cloud_details(, "easysurv") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘easysurv-Ex.R’ failed The error most likely occurred in:
Name: get_km
Title: Generate Kaplan-Meier estimates
Aliases: get_km
** Examples
km_results <- get_km( ... Poor Poor 228 145 3.101736 0.1772520 2.183562 1.978082 2.619178 Median follow-up Good 4.452055 Medium 4.712329 Poor 4.115068
Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = "{n.risk}", : argument "risktable_height" is missing, with no default Calls: ... ggsurvfit_build -> -> .construct_risktable Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘easysurv.Rmd’ using rmarkdown
Quitting from easysurv.Rmd:148-157 [km] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
.construct_risktable(): ! argument "risktable_height" is missing, with no defaultBacktrace: ...
Error: processing vignette 'easysurv.Rmd' failed with diagnostics: argument "risktable_height" is missing, with no default --- failed re-building ‘easysurv.Rmd’
SUMMARY: processing the following file failed: ‘easysurv.Rmd’
Error: Vignette re-building failed. Execution halted ```
ecocbo
- Version: 0.12.0
- GitHub: NA
- Source code: https://github.com/cran/ecocbo
- Date/Publication: 2024-08-21 08:00:02 UTC
- Number of recursive dependencies: 114
Run revdepcheck::cloud_details(, "ecocbo") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... |======================================================================| 100% [ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot_power.R:5:3'): plots are plotted ──────────────────────── plot_power(epiBetaR, n = 4, m = 4, method = "power") has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ] Error: Test failures Execution halted ```
EGM
- Version: 0.1.0
- GitHub: https://github.com/shah-in-boots/EGM
- Source code: https://github.com/cran/EGM
- Date/Publication: 2024-05-23 16:10:05 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "EGM") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(EGM) Loading required package: vctrs Loading required package: data.table > EGM::set_wfdb_path("/usr/local/bin") > > test_check("EGM") ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ggm.R:63:2'): theming works ────────────────────────────────── g$labels$x (actual) not equal to "sample" (expected`).actualis NULLexpectedis a character vector ('sample')[ FAIL 1 | WARN 9 | SKIP 19 | PASS 43 ] Error: Test failures Execution halted ```
eks
- Version: 1.1.0
- GitHub: NA
- Source code: https://github.com/cran/eks
- Date/Publication: 2025-05-18 17:30:02 UTC
- Number of recursive dependencies: 78
Run revdepcheck::cloud_details(, "eks") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.scale_rem: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
ENMTools
- Version: 1.1.2
- GitHub: NA
- Source code: https://github.com/cran/ENMTools
- Date/Publication: 2024-01-16 12:50:11 UTC
- Number of recursive dependencies: 285
Run revdepcheck::cloud_details(, "ENMTools") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ENMTools) Loading required package: dismo Loading required package: raster Loading required package: sp > > test_check("ENMTools") ...actual: FALSEexpected`: TRUE Backtrace: ▆- └─ENMTools (local) expect_enmtools_model(cyreni.glm.raster2) at test_ENMTools.R:249:3
- └─testthat::expect_true(...) at test_ENMTools.R:66:3
[ FAIL 9 | WARN 0 | SKIP 3 | PASS 167 ] Error: Test failures Execution halted ```
epiCleanr
- Version: 0.2.0
- GitHub: https://github.com/truenomad/epiCleanr
- Source code: https://github.com/cran/epiCleanr
- Date/Publication: 2023-09-28 12:20:05 UTC
- Number of recursive dependencies: 128
Run revdepcheck::cloud_details(, "epiCleanr") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘epiCleanr-Ex.R’ failed The error most likely occurred in:
Name: handle_outliers
Title: Detect and Handle Outliers in Dataset
Aliases: handle_outliers
** Examples
... 13. │ └─ggplot2 (local) FUN(X[[i]], ...) 14. │ └─scale$map_df(df = df) 15. │ └─ggplot2 (local) map_df(..., self = self) 16. │ └─base::lapply(aesthetics, function(j) self$map(df[[j]])) 17. │ └─ggplot2 (local) FUN(X[[i]], ...) 18. │ └─self$map(df[[j]]) 19. │ └─ggplot2 (local) map(..., self = self) 20. │ └─vctrs::
vec_slice<-(*tmp*, is.na(x), value = na_value) 21. └─rlang::cnd_signal(x) Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.6Mb sub-directories of 1Mb or more: doc 2.9Mb help 2.5Mb
epiphy
- Version: 0.5.0
- GitHub: https://github.com/chgigot/epiphy
- Source code: https://github.com/cran/epiphy
- Date/Publication: 2023-11-16 11:20:10 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "epiphy") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘epiphy-Ex.R’ failed The error most likely occurred in:
Name: clump
Title: Regroup observational data into even clumps of individuals.
Aliases: clump clump.intensity
** Examples
my_incidence <- incidence(tomato_tswv$field_1929) ... 21. │ └─ggplot2 (local) setup_params(...) 22. │ └─ggplot2:::make_summary_fun(...) 23. │ └─rlang::as_function(fun.data) 24. │ └─base::get(x, envir = env, mode = "function") 25. └─base::.handleSimpleError(...) 26. └─rlang (local) h(simpleError(msg, call)) 27. └─handlers[1L] 28. └─cli::cli_abort(...) 29. └─rlang::abort(...) Execution halted ```
epos
- Version: 1.1
- GitHub: https://github.com/bernd-mueller/epos
- Source code: https://github.com/cran/epos
- Date/Publication: 2024-03-15 10:10:02 UTC
- Number of recursive dependencies: 94
Run revdepcheck::cloud_details(, "epos") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(epos) > > test_check("epos") [ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... [1] 1 - 11 == -10 Backtrace: ▆ 1. └─testthat::expect_that(length(tanimotobaseline), equals(11)) at test_createTanimotoBaseline.R:47:3 2. └─testthat (local) condition(object) 3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ] Error: Test failures Execution halted ```
In both
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘testthat’ All declared Imports should be used. -
checking data for non-ASCII characters ... NOTE
Note: found 15 marked UTF-8 strings
EQUALSTATS
- Version: 0.5.0
- GitHub: NA
- Source code: https://github.com/cran/EQUALSTATS
- Date/Publication: 2024-09-23 08:30:02 UTC
- Number of recursive dependencies: 128
Run revdepcheck::cloud_details(, "EQUALSTATS") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘EQUALSTATS-Ex.R’ failed The error most likely occurred in:
Name: function.Survival_Analysis
Title: Perform Survival Analysis
Aliases: function.Survival_Analysis
** Examples
Create simulated data
... rv$second_menu_choice <- NA rv$entry[[1]] <- "Admission to care home" rv$entry[[2]] <- "Follow-up" rv$entry[[3]] <- "Treatment"
Final function
Results <- function.Survival_Analysis(Predefined_lists, rv) Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = c("{n.risk}", : argument "risktable_height" is missing, with no default Calls: function.Survival_Analysis Execution halted ```
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘lmerTest’
equatiomatic
- Version: 0.3.6
- GitHub: https://github.com/datalorax/equatiomatic
- Source code: https://github.com/cran/equatiomatic
- Date/Publication: 2025-03-10 16:50:09 UTC
- Number of recursive dependencies: 145
Run revdepcheck::cloud_details(, "equatiomatic") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘colors.Rmd’ using rmarkdown --- finished re-building ‘colors.Rmd’
--- re-building ‘equatiomatic.Rmd’ using rmarkdown --- finished re-building ‘equatiomatic.Rmd’
--- re-building ‘forecast-arima.Rmd’ using rmarkdown --- finished re-building ‘forecast-arima.Rmd’
--- re-building ‘lme4-lmer.Rmd’ using rmarkdown --- finished re-building ‘lme4-lmer.Rmd’
--- re-building ‘plotting-integration.Rmd’ using rmarkdown ```
errors
- Version: 0.4.3
- GitHub: https://github.com/r-quantities/errors
- Source code: https://github.com/cran/errors
- Date/Publication: 2025-01-18 18:10:05 UTC
- Number of recursive dependencies: 65
Run revdepcheck::cloud_details(, "errors") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘errors-Ex.R’ failed The error most likely occurred in:
Name: geom_errors
Title: Errorbars for 'errors' objects
Aliases: geom_errors
** Examples
if (requireNamespace("ggplot2", quietly=TRUE)) { ... 23. │ └─self$draw_panel(data, panel_params, coord, width = 0.05, height = 0.05) 24. │ └─errors (local) draw_panel(...) 25. │ ├─base::append(...) 26. │ └─ggplot2::GeomErrorbarh$draw_panel(...) 27. └─base::.handleSimpleError(...) 28. └─rlang (local) h(simpleError(msg, call)) 29. └─handlers[1L] 30. └─cli::cli_abort(...) 31. └─rlang::abort(...) Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘rjournal.Rmd’ using rmarkdown
Quitting from rjournal.Rmd:252-272 [plot] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rjournal.Rmd' failed with diagnostics: ... ℹ Error occurred in the 2nd layer. Caused by error in
draw_panel(): ! unused argument (height = NULL) --- failed re-building ‘rjournal.Rmd’SUMMARY: processing the following file failed: ‘rjournal.Rmd’
Error: Vignette re-building failed. Execution halted ```
eudract
- Version: 1.0.4
- GitHub: https://github.com/shug0131/eudraCT
- Source code: https://github.com/cran/eudract
- Date/Publication: 2025-03-20 17:20:02 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "eudract") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘eudract-Ex.R’ failed The error most likely occurred in:
Name: dot_plot
Title: creates a dot-plot of safety data showing the absolute and
relative risks
Aliases: dot_plot
** Examples
...
$reference [1] "Control"
fig <- dot_plot(safety_statistics, type="non_serious", base=4) fig Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(eudract) > > test_check("eudract") [ FAIL 1 | WARN 3 | SKIP 4 | PASS 75 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════ ...
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 75 ] Deleting unused snapshots: • dotplot/dotplot-1group.svg • dotplot/dotplot-3groups.svg • dotplot/dotplot-ref-rr.svg • dotplot/dotplot-ref.svg • dotplot/dotplot.svg Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘eudract.Rmd’ using rmarkdown --- finished re-building ‘eudract.Rmd’
--- re-building ‘standard_reporting.Rmd’ using rmarkdown
Quitting from standard_reporting.Rmd:65-67 [dotplot_sae] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ... Can't find method for generic
&(e1, e2): - e1: - e2: --- failed re-building ‘standard_reporting.Rmd’SUMMARY: processing the following file failed: ‘standard_reporting.Rmd’
Error: Vignette re-building failed. Execution halted ```
eventstudyr
- Version: 1.1.3
- GitHub: https://github.com/JMSLab/eventstudyr
- Source code: https://github.com/cran/eventstudyr
- Date/Publication: 2024-03-04 15:00:02 UTC
- Number of recursive dependencies: 97
Run revdepcheck::cloud_details(, "eventstudyr") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(eventstudyr) > > test_check("eventstudyr") Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. ...expectedis a character vector ('ci_lower') ── Failure ('test-EventStudyPlot.R:128:5'): confidence intervals are appropriately present or absent ── p_ci$labels$ymax (actual) not equal to "ci_upper" (expected`).actualis NULLexpectedis a character vector ('ci_upper')[ FAIL 6 | WARN 0 | SKIP 0 | PASS 258 ] Error: Test failures Execution halted ```
EvoPhylo
- Version: 0.3.2
- GitHub: https://github.com/tiago-simoes/EvoPhylo
- Source code: https://github.com/cran/EvoPhylo
- Date/Publication: 2022-11-03 17:00:02 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "EvoPhylo") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘EvoPhylo-Ex.R’ failed The error most likely occurred in:
Name: plot_treerates_sgn
Title: Plot Bayesian evolutionary tree with rate thresholds for
selection mode
Aliases: plot_treerates_sgn
** Examples
... Warning:
aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the ggtree package. Please report the issue at https://github.com/YuLab-SMU/ggtree/issues. Error: .onLoad failed in loadNamespace() for 'deeptime', details: call: NULL error: object properties are invalid: - @hjust must be , , or , not Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘char-part.Rmd’ using rmarkdown
Quitting from char-part.Rmd:28-30 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'char-part.Rmd' failed with diagnostics: The package "deeptime" (>= 0.2.0) is required. ... Error: processing vignette 'rates-selection_MrBayes.Rmd' failed with diagnostics: The package "deeptime" (>= 0.2.0) is required. --- failed re-building ‘rates-selection_MrBayes.Rmd’
SUMMARY: processing the following files failed: ‘char-part.Rmd’ ‘fbd-params.Rmd’ ‘offset_handling.Rmd’ ‘rates-selection_BEAST2.Rmd’ ‘rates-selection_MrBayes.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 6.8Mb sub-directories of 1Mb or more: data 2.5Mb doc 1.6Mb extdata 2.4Mb
explainer
- Version: 1.0.2
- GitHub: https://github.com/PERSIMUNE/explainer
- Source code: https://github.com/cran/explainer
- Date/Publication: 2024-09-30 17:30:02 UTC
- Number of recursive dependencies: 184
Run revdepcheck::cloud_details(, "explainer") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘explainer-Ex.R’ failed The error most likely occurred in:
Name: eDecisionCurve
Title: Decision Curve Plot
Aliases: eDecisionCurve
** Examples
library("explainer") ... mylrn$train(maintask, splits$train) myplot <- eDecisionCurve( + task = maintask, + trained_model = mylrn, + splits = splits, + seed = seed + ) Error in pm[[2]] : subscript out of bounds Calls: eDecisionCurve -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ggpmisc’ All declared Imports should be used.
ez
- Version: 4.4-0
- GitHub: https://github.com/mike-lawrence/ez
- Source code: https://github.com/cran/ez
- Date/Publication: 2016-11-02 18:17:31
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "ez") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ez-Ex.R’ failed The error most likely occurred in:
Name: ezPlot
Title: Plot data from a factorial experiment
Aliases: ezPlot
** Examples
Read in the ANT data (see ?ANT).
... Backtrace: ▆ 1. └─ez::ezPlot(...) 2. ├─base::eval(parse(text = p)) 3. │ └─base::eval(parse(text = p)) 4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y") 5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") 6. └─lifecycle:::deprecate_stop0(msg) 7. └─rlang::cnd_signal(...) Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
ezEDA
- Version: 0.1.1
- GitHub: https://github.com/kviswana/ezEDA
- Source code: https://github.com/cran/ezEDA
- Date/Publication: 2021-06-29 04:40:10 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "ezEDA") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ezEDA) > > test_check("ezEDA") [ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Error ('test_two_measures_relationship.R:19:3'): y axis is labeled 'hwy' ──── Error in
expect_match(p$labels$y, "hwy"): is.character(act$val) is not TRUE Backtrace: ▆ 1. └─testthat::expect_match(p$labels$y, "hwy") at test_two_measures_relationship.R:19:3 2. └─base::stopifnot(is.character(act$val))[ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ] Error: Test failures Execution halted ```
EZFragility
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/EZFragility
- Date/Publication: 2025-04-10 14:40:09 UTC
- Number of recursive dependencies: 84
Run revdepcheck::cloud_details(, "EZFragility") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘EZFragility-Ex.R’ failed The error most likely occurred in:
Name: plotFragHeatmap
Title: Visualization functions (raw signal, fragility matrix)
Aliases: plotFragHeatmap plotFragQuantile plotFragDistribution
** Examples
...
precomputed fragility object
data("pt01Frag")
plot the fragility heatmap
plotFragHeatmap(frag = pt01Frag, sozIndex = sozIndex) Warning: Ignoring unknown labels: • size : "2" Error:
objectmust be an , not a S3 Execution halted ``` -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘Intro_to_EZFragility.Rmd’ using rmarkdown
ezplot
- Version: 0.7.13
- GitHub: NA
- Source code: https://github.com/cran/ezplot
- Date/Publication: 2024-01-28 11:30:05 UTC
- Number of recursive dependencies: 105
Run revdepcheck::cloud_details(, "ezplot") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ezplot-Ex.R’ failed The error most likely occurred in:
Name: variable_plot
Title: variable_plot
Aliases: variable_plot
** Examples
suppressPackageStartupMessages(library(tsibble)) library(tsibbledata) variable_plot(ansett, "Week", "Passengers", facet_x = "Class", yoy = TRUE) Error: object properties are invalid: - @linewidth must be , , or , not Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ezplot) > suppressPackageStartupMessages(library(tsibble)) > > test_check("ezplot") [ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ]
... 2. ├─ggplot2::theme(...) 3. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL) 4. │ └─base::mget(args, envir = env) 5. └─ggplot2::element_rect(fill = NA, colour = NA, linewidth = NA) 6. └─S7::new_object(...) 7. └─S7::validate(object, recursive = !parent_validated)
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘bar_plot.Rmd’ using rmarkdown
fabletools
- Version: 0.5.0
- GitHub: https://github.com/tidyverts/fabletools
- Source code: https://github.com/cran/fabletools
- Date/Publication: 2024-09-17 07:30:02 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "fabletools") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
...
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-graphics.R:327:3'): autoplot_dcmp_ts() ───────────────────────
print(p)produced warnings. ── Failure ('test-graphics.R:346:3'): autoplot_dcmp_ts() ───────────────────────print(p)produced warnings.[ FAIL 2 | WARN 5 | SKIP 1 | PASS 292 ] Error: Test failures Execution halted ```
fairmodels
- Version: 1.2.1
- GitHub: https://github.com/ModelOriented/fairmodels
- Source code: https://github.com/cran/fairmodels
- Date/Publication: 2022-08-23 19:50:06 UTC
- Number of recursive dependencies: 83
Run revdepcheck::cloud_details(, "fairmodels") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘fairmodels-Ex.R’ failed The error most likely occurred in:
Name: fairness_heatmap
Title: Fairness heatmap
Aliases: fairness_heatmap
** Examples
... [32m Fairness object created succesfully [39m
fh <- fairness_heatmap(fobject)
plot(fh) Error in rep(yes, length.out = len) : attempt to replicate an object of type 'object' Calls: plot -> plot.fairness_heatmap -> ifelse Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(fairmodels) > > > test_check("fairmodels") Welcome to DALEX (version: 2.4.3). Find examples and detailed introduction at: http://ema.drwhy.ai/ ... 5. │ └─base::class(object) %in% class 6. ├─fairmodels::plot_fairmodels(fc, type = "fairness_heatmap") 7. └─fairmodels:::plot_fairmodels.fairness_object(fc, type = "fairness_heatmap") 8. └─fairmodels:::plot_fairmodels.default(x, type, ...) 9. └─fairmodels:::plot.fairness_heatmap(fairness_heatmap(x, ...))
- └─base::ifelse(...)
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 299 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘Advanced_tutorial.Rmd’ using rmarkdown
In both
- checking Rd files ... NOTE
checkRd: (-1) choose_metric.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) choose_metric.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) choose_metric.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confusion_matrx.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confusion_matrx.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confusion_matrx.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confusion_matrx.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) disparate_impact_remover.Rd:28: Lost braces 28 | pigeonholing. The number of pigeonholes is fixed and equal to min{101, unique(a)}, where a is vector with values for subgroup. So if some subgroup is not numerous and | ^ ... checkRd: (-1) group_metric.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) group_metric.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) group_metric.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) group_metric.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) metric_scores.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) metric_scores.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) performance_and_fairness.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) performance_and_fairness.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) performance_and_fairness.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) performance_and_fairness.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
fairness
- Version: 1.2.2
- GitHub: https://github.com/kozodoi/fairness
- Source code: https://github.com/cran/fairness
- Date/Publication: 2021-04-14 15:00:02 UTC
- Number of recursive dependencies: 149
Run revdepcheck::cloud_details(, "fairness") for more info
Newly broken
- checking whether package ‘fairness’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fairness’ See ‘/tmp/workdir/fairness/new/fairness.Rcheck/00install.out’ for details.
faux
- Version: 1.2.2
- GitHub: https://github.com/debruine/faux
- Source code: https://github.com/cran/faux
- Date/Publication: 2025-01-15 09:10:01 UTC
- Number of recursive dependencies: 127
Run revdepcheck::cloud_details(, "faux") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘faux-Ex.R’ failed The error most likely occurred in:
Name: norm2likert
Title: Convert normal to likert
Aliases: norm2likert
** Examples
... 2. └─plt$build() 3. └─private$addLimits(margThemed) 4. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish) 5. └─ggplot2::continuous_scale(...) 6. └─ggplot2:::check_continuous_limits(limits, call = call) 7. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE) 8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) 9. └─ggplot2:::stop_input_type(...) 10. └─rlang::abort(message, ..., call = call, arg = arg) Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(faux)
Welcome to faux. For support and examples visit: https://debruine.github.io/faux/ - Get and set global package options with: faux_options() ... class(p) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 Backtrace: ▆ 1. └─global expect_equal(class(p), c("gg", "ggplot")) at test-plot_design.R:288:3 2. └─testthat::expect_equal(..., check.environment = FALSE)
[ FAIL 19 | WARN 0 | SKIP 22 | PASS 1351 ] Error: Test failures Execution halted ```
fChange
- Version: 2.0.0
- GitHub: NA
- Source code: https://github.com/cran/fChange
- Date/Publication: 2025-03-27 18:00:09 UTC
- Number of recursive dependencies: 206
Run revdepcheck::cloud_details(, "fChange") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...expected: "gg" ── Failure ('test-plot_qq.R:3:3'): QQ Plot ───────────────────────────────────── class(tmp)[1] (actual) not equal to "gg" (expected`).actual: "ggplot2::ggplot"expected: "gg"[ FAIL 13 | WARN 0 | SKIP 9 | PASS 177 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 6.0Mb sub-directories of 1Mb or more: data 2.0Mb libs 3.5Mb
feasts
- Version: 0.4.1
- GitHub: https://github.com/tidyverts/feasts
- Source code: https://github.com/cran/feasts
- Date/Publication: 2024-09-25 23:40:02 UTC
- Number of recursive dependencies: 97
Run revdepcheck::cloud_details(, "feasts") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(feasts) Loading required package: fabletools > > test_check("feasts") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
... ▆ 1. ├─ggplot2::ggplot_build(p[[1]]) at test-graphics.R:194:3 2. ├─ggplot2:::ggplot_build.default(p[[1]]) 3. │ └─ggplot2::build_ggplot(plot) 4. │ └─S7::S7_dispatch() 5. └─S7:::method_lookup_error("build_ggplot",
<named list>)[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ] Error: Test failures Execution halted ```
fec16
- Version: 0.1.4
- GitHub: https://github.com/baumer-lab/fec16
- Source code: https://github.com/cran/fec16
- Date/Publication: 2023-08-09 10:50:14 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "fec16") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘fec_vignette.Rmd’ using rmarkdown
In both
- checking data for non-ASCII characters ... NOTE
Note: found 20 marked UTF-8 strings
fitbitViz
- Version: 1.0.6
- GitHub: https://github.com/mlampros/fitbitViz
- Source code: https://github.com/cran/fitbitViz
- Date/Publication: 2024-02-08 09:30:02 UTC
- Number of recursive dependencies: 153
Run revdepcheck::cloud_details(, "fitbitViz") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(fitbitViz) > > test_check("fitbitViz") [ FAIL 3 | WARN 3 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... 4. ├─ggplot2::theme(...) 5. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL) 6. │ └─base::mget(args, envir = env) 7. └─ggplot2::element_text(...) 8. └─S7::new_object(...) 9. └─S7::validate(object, recursive = !parent_validated)
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 4 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb sub-directories of 1Mb or more: doc 4.0Mb
flextable
- Version: 0.9.9
- GitHub: https://github.com/davidgohel/flextable
- Source code: https://github.com/cran/flextable
- Date/Publication: 2025-05-31 09:40:02 UTC
- Number of recursive dependencies: 131
Run revdepcheck::cloud_details(, "flextable") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘flextable-Ex.R’ failed The error most likely occurred in:
Name: gg_chunk
Title: 'ggplots' chunk wrapper
Aliases: gg_chunk
** Examples
library(data.table) ... Loading required package: ggplot2 a flextable object. col_keys:
Species,ggheader has 1 row(s) body has 3 row(s) original dataset sample: Error in format.default(unlist(xx), ...) : c("Found no format() method for class \"ggplot2::ggplot\"", "Found no format() method for class \"ggplot\"", "Found no format() method for class \"ggplot2::gg\"", "Found no format() method for class \"S7_object\"", "Found no format() method for class \"gg\"") Calls: ... format -> format.default -> lapply -> FUN -> format.default Execution halted ```
flipr
- Version: 0.3.3
- GitHub: https://github.com/LMJL-Alea/flipr
- Source code: https://github.com/cran/flipr
- Date/Publication: 2023-08-23 09:00:02 UTC
- Number of recursive dependencies: 104
Run revdepcheck::cloud_details(, "flipr") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘alternative.Rmd’ using rmarkdown --- finished re-building ‘alternative.Rmd’
--- re-building ‘exactness.Rmd’ using rmarkdown
Quitting from exactness.Rmd:141-177 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ... 6. ├─plotly::ggplotly(.) 7. └─plotly:::ggplotly.ggplot(.) 8. └─plotly::gg2list(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Error: processing vignette 'exactness.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘exactness.Rmd’
--- re-building ‘flipr.Rmd’ using rmarkdown ```
In both
- checking installed package size ... NOTE
installed size is 11.2Mb sub-directories of 1Mb or more: doc 9.1Mb libs 1.4Mb
fmf
- Version: 1.1.1
- GitHub: NA
- Source code: https://github.com/cran/fmf
- Date/Publication: 2020-09-03 07:32:12 UTC
- Number of recursive dependencies: 175
Run revdepcheck::cloud_details(, "fmf") for more info
Newly broken
- checking whether package ‘fmf’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fmf’ See ‘/tmp/workdir/fmf/new/fmf.Rcheck/00install.out’ for details.
In both
- checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
foqat
- Version: 2.0.8.2
- GitHub: https://github.com/tianshu129/foqat
- Source code: https://github.com/cran/foqat
- Date/Publication: 2023-09-30 06:10:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "foqat") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Air_Quality.Rmd’ using rmarkdown --- finished re-building ‘Air_Quality.Rmd’
--- re-building ‘Atmospheric_Radiation.Rmd’ using rmarkdown --- finished re-building ‘Atmospheric_Radiation.Rmd’
--- re-building ‘Basic_Functions.Rmd’ using rmarkdown --- finished re-building ‘Basic_Functions.Rmd’
--- re-building ‘Particle_Size_Distribution.Rmd’ using rmarkdown ```
forestly
- Version: 0.1.2
- GitHub: https://github.com/Merck/forestly
- Source code: https://github.com/cran/forestly
- Date/Publication: 2025-01-10 16:20:14 UTC
- Number of recursive dependencies: 80
Run revdepcheck::cloud_details(, "forestly") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘forest-plot-static.Rmd’ using rmarkdown
forestPSD
- Version: 1.0.0
- GitHub: NA
- Source code: https://github.com/cran/forestPSD
- Date/Publication: 2024-11-11 16:50:05 UTC
- Number of recursive dependencies: 44
Run revdepcheck::cloud_details(, "forestPSD") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘forestPSD-Ex.R’ failed The error most likely occurred in:
Name: psdfun
Title: Regression analysis for survival curves.
Aliases: psdfun
** Examples
data(Npop) ... 16. │ └─l$compute_geom_2(d, theme = plot@theme) 17. │ └─ggplot2 (local) compute_geom_2(..., self = self) 18. │ └─self$geom$use_defaults(...) 19. │ └─ggplot2 (local) use_defaults(..., self = self) 20. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) 21. │ └─vctrs::list_sizes(x) 22. └─vctrs:::stop_scalar_type(
<fn>(<expression>), "x$label",<env>) 23. └─vctrs:::stop_vctrs(...) 24. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘ggplot2’ ‘reshape2’ All declared Imports should be used.
formods
- Version: 0.2.0
- GitHub: https://github.com/john-harrold/formods
- Source code: https://github.com/cran/formods
- Date/Publication: 2025-01-07 16:20:06 UTC
- Number of recursive dependencies: 187
Run revdepcheck::cloud_details(, "formods") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-FG_module.R:13:5'): FG -- Forcing builds of figures ────────── class(ggplot2::ggplot_build(sess_res[["state"]][["FG"]][["figs"]][[fid]][["fobj"]])) (actual) not equal to "ggplot_built" (expected`).actual: "ggplot2::ggplot_built" "ggplot_built" "ggplot2::gg" "S7_object"expected: "ggplot_built"[ FAIL 1 | WARN 32 | SKIP 0 | PASS 39 ] Error: Test failures Execution halted ```
fqar
- Version: 0.5.4
- GitHub: https://github.com/equitable-equations/fqar
- Source code: https://github.com/cran/fqar
- Date/Publication: 2024-10-06 18:00:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "fqar") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-species_profile_plot.R:21:3'): species_profile_plot works ──── class(p) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 1 | WARN 0 | SKIP 0 | PASS 365 ] Error: Test failures Execution halted ```
frailtyEM
- Version: 1.0.1
- GitHub: https://github.com/tbalan/frailtyEM
- Source code: https://github.com/cran/frailtyEM
- Date/Publication: 2019-09-22 13:00:10 UTC
- Number of recursive dependencies: 75
Run revdepcheck::cloud_details(, "frailtyEM") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘frailtyEM-Ex.R’ failed The error most likely occurred in:
Name: summary.emfrail
Title: Summary for 'emfrail' objects
Aliases: summary.emfrail
** Examples
data("bladder") ... filter
The following object is masked from ‘package:graphics’:
layoutggplotly(pl2) Error in pm[[2]] : subscript out of bounds Calls: ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
In both
-
checking re-building of vignette outputs ... WARNING
`` Error(s) in re-building vignettes: --- re-building ‘frailtyEM_manual.Rnw’ using Sweave Loading required package: survival Loading required package: gridExtra Warning:aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")` for more information. ℹ The deprecated feature was likely used in the frailtyEM package. ... l.179 \RequirePackage{grfext}\relax ^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘frailtyEM_manual.Rnw’SUMMARY: processing the following file failed: ‘frailtyEM_manual.Rnw’
Error: Vignette re-building failed. Execution halted ```
-
checking Rd files ... NOTE
checkRd: (-1) emfrail_control.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) emfrail_control.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) emfrail_control.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) emfrail_control.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) emfrail_control.Rd:53-54: Lost braces in \itemize; meant \describe ? checkRd: (-1) emfrail_control.Rd:55-57: Lost braces in \itemize; meant \describe ? -
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
funcharts
- Version: 1.7.0
- GitHub: https://github.com/unina-sfere/funcharts
- Source code: https://github.com/cran/funcharts
- Date/Publication: 2025-03-17 17:30:02 UTC
- Number of recursive dependencies: 126
Run revdepcheck::cloud_details(, "funcharts") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘funcharts-Ex.R’ failed The error most likely occurred in:
Name: control_charts_pca_mfd_real_time
Title: Real-time T2 and SPE control charts for multivariate functional
data
Aliases: control_charts_pca_mfd_real_time
** Examples
...
cclist <- control_charts_pca_mfd_real_time( + pca_list = pca_list, + components_list = 1:3, + mfdobj_x_test = mfdobj_x2_list) plot_control_charts_real_time(cclist, 1) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(funcharts) Loading required package: robustbase > > test_check("funcharts") [1] "The Fisher omnibus combining function is considered." [1] "The Fisher omnibus combining function is considered." ...
- e1:
- e2: Backtrace: ▆
- └─funcharts::plot_control_charts_real_time(cclist, 1) at test_phaseII.R:104:3
- └─S7:::Ops.S7_object(...)
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 111 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb sub-directories of 1Mb or more: R 1.5Mb libs 3.4Mb
FunnelPlotR
- Version: 0.5.0
- GitHub: https://github.com/nhs-r-community/FunnelPlotR
- Source code: https://github.com/cran/FunnelPlotR
- Date/Publication: 2024-04-12 08:40:02 UTC
- Number of recursive dependencies: 81
Run revdepcheck::cloud_details(, "FunnelPlotR") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘FunnelPlotR-Ex.R’ failed The error most likely occurred in:
Name: funnel_plot
Title: Funnel plots for comparing institutional performance
Aliases: funnel_plot
** Examples
We will use the 'medpar' dataset from the 'COUNT' package.
...
Get predicted values for building ratio
medpar$prds<- predict(mod, type="response")
Draw plot, returning just the plot object
fp<-funnel_plot(medpar, denominator=prds, numerator=los, + group = provnum, limit=95, title="An example funnel plot") Error in validate_funnel_plot(rtn) : Invalid ggplot object Calls: funnel_plot -> validate_funnel_plot Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(FunnelPlotR) > > test_check("FunnelPlotR") [ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Error ('test-funnel_plot.R:7:3'):
funnel_plot()works with input and returns expected list ── Error invalidate_funnel_plot(rtn): Invalid ggplot object Backtrace: ▆ 1. └─FunnelPlotR::funnel_plot(dt, num, denom, group) at test-funnel_plot.R:7:3 2. └─FunnelPlotR:::validate_funnel_plot(rtn)[ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘changing_funnel_plot_options.Rmd’ using rmarkdown
Quitting from changing_funnel_plot_options.Rmd:32-49 [dtsetup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
validate_funnel_plot(): ! Invalid ggplot objectBacktrace: ... ▆ 1. └─FunnelPlotR::funnel_plot(...) 2. └─FunnelPlotR:::validate_funnel_plot(rtn) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'changing_funnel_plot_options.Rmd' failed with diagnostics: Invalid ggplot object --- failed re-building ‘changing_funnel_plot_options.Rmd’
--- re-building ‘funnel_plots.Rmd’ using rmarkdown ```
gapfill
- Version: 0.9.6-1
- GitHub: https://github.com/florafauna/gapfill
- Source code: https://github.com/cran/gapfill
- Date/Publication: 2021-02-12 10:10:05 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "gapfill") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘run-all.R’ Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > test_check('gapfill') Loading required package: gapfill Loading required package: ggplot2 --> See ?Gapfill and https://doi.org/10.1109/TGRS.2017.2785240 <-- [ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
... ── Failure ('test-Image.R:10:4'): Image ──────────────────────────────────────── class(Image(unname(ndvi))) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test-Image.R:11:4'): Image ──────────────────────────────────────── class(Image(ndvi, zlim = c(1, 2))) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ] Error: Test failures Execution halted ```
In both
-
checking package dependencies ... NOTE
Packages which this enhances but not available for checking: 'raster', 'doParallel', 'doMPI' -
checking Rd files ... NOTE
checkRd: (-1) Gapfill.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Gapfill.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Gapfill.Rd:71-77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Gapfill.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Gapfill.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Gapfill.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Gapfill.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Gapfill.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ndvi.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) ndvi.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) ndvi.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) ndvi.Rd:13: Lost braces in \itemize; meant \describe ?
gapminder
- Version: 1.0.0
- GitHub: https://github.com/jennybc/gapminder
- Source code: https://github.com/cran/gapminder
- Date/Publication: 2023-03-10 09:50:08 UTC
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "gapminder") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘gapminder-Ex.R’ failed The error most likely occurred in:
Name: country_colors
Title: Gapminder color schemes.
Aliases: country_colors continent_colors
Keywords: datasets
** Examples
... and is now defunct. ℹ Please use the
show.legendargument instead. Backtrace: ▆ 1. └─ggplot2::geom_line(lwd = 1, show_guide = FALSE) 2. └─ggplot2::layer(...) 3. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)") 4. └─lifecycle:::deprecate_stop0(msg) 5. └─rlang::cnd_signal(...) Execution halted ```
genekitr
- Version: 1.2.8
- GitHub: https://github.com/GangLiLab/genekitr
- Source code: https://github.com/cran/genekitr
- Date/Publication: 2024-09-06 13:00:06 UTC
- Number of recursive dependencies: 196
Run revdepcheck::cloud_details(, "genekitr") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘genekitr-Ex.R’ failed The error most likely occurred in:
Name: plotVenn
Title: Venn plot for groups of genes
Aliases: plotVenn
** Examples
k1 = requireNamespace("ComplexUpset",quietly = TRUE) ... 32. │ └─ggplot2 (local)
method(merge_element, list(ggplot2::element, class_any))(...) 33. │ └─S7::props(old, idx) 34. │ └─S7::check_is_S7(object) 35. │ └─base::stop(msg, call. = FALSE) 36. └─base::.handleSimpleError(...) 37. └─rlang (local) h(simpleError(msg, call)) 38. └─handlers[1L] 39. └─cli::cli_abort(...) 40. └─rlang::abort(...) Execution halted ```
geneSLOPE
- Version: 0.38.2
- GitHub: https://github.com/psobczyk/geneSLOPE
- Source code: https://github.com/cran/geneSLOPE
- Date/Publication: 2023-08-16 09:12:37 UTC
- Number of recursive dependencies: 76
Run revdepcheck::cloud_details(, "geneSLOPE") for more info
Newly broken
- checking whether package ‘geneSLOPE’ can be installed ... WARNING
Found the following significant warnings: Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. See ‘/tmp/workdir/geneSLOPE/new/geneSLOPE.Rcheck/00install.out’ for details.
geofacet
- Version: 0.2.1
- GitHub: https://github.com/hafen/geofacet
- Source code: https://github.com/cran/geofacet
- Date/Publication: 2023-11-30 08:00:11 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "geofacet") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.facet_geo_spec: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
In both
- checking data for non-ASCII characters ... NOTE
Note: found 646 marked UTF-8 strings
geoheatmap
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/geoheatmap
- Date/Publication: 2024-09-05 15:40:02 UTC
- Number of recursive dependencies: 102
Run revdepcheck::cloud_details(, "geoheatmap") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘geoheatmap.Rmd’ using rmarkdown
geomtextpath
- Version: 0.1.5
- GitHub: https://github.com/AllanCameron/geomtextpath
- Source code: https://github.com/cran/geomtextpath
- Date/Publication: 2025-01-14 17:40:02 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "geomtextpath") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘geomtextpath-Ex.R’ failed The error most likely occurred in:
Name: geom_textsf
Title: Visualise sf objects with labels
Aliases: geom_textsf geom_labelsf
** Examples
ggplot(waterways) + ... 22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 23. │ └─self$draw_panel(...) 24. │ └─geomtextpath (local) draw_panel(...) 25. │ └─geomtextpath:::sf_textgrob(...) 26. └─base::.handleSimpleError(...) 27. └─rlang (local) h(simpleError(msg, call)) 28. └─handlers[1L] 29. └─cli::cli_abort(...) 30. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(geomtextpath) Loading required package: ggplot2 > > test_check("geomtextpath") [ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ]
...
expectedis an expression vector ── Error ('test-sf.R:91:3'): We can make grobs from sf features ──────────────── Error in(x$boxlinewidth %||% defaults$linewidth[type_ind]) * 3.779528: non-numeric argument to binary operator Backtrace: ▆ 1. └─geomtextpath:::sf_textgrob(river, as_textbox = TRUE) at test-sf.R:91:3[ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ] Error: Test failures Execution halted ```
gfoRmulaICE
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/gfoRmulaICE
- Date/Publication: 2024-12-02 12:50:08 UTC
- Number of recursive dependencies: 89
Run revdepcheck::cloud_details(, "gfoRmulaICE") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...expected[2:2]: "ggplot" ── Failure ('test_plot.R:534:5'): plot complicated scenario 3 - intervention-specific time options ── class(plots) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 15 | WARN 176 | SKIP 0 | PASS 47 ] Error: Test failures Execution halted ```
gg1d
- Version: 0.1.0
- GitHub: https://github.com/selkamand/gg1d
- Source code: https://github.com/cran/gg1d
- Date/Publication: 2024-12-09 19:40:02 UTC
- Number of recursive dependencies: 87
Run revdepcheck::cloud_details(, "gg1d") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘gg1d-Ex.R’ failed The error most likely occurred in:
Name: gg1d
Title: AutoPlot an entire data.frame
Aliases: gg1d
** Examples
path_gg1d <- system.file("example.csv", package = "gg1d") ... 31. │ └─base::lapply(...) 32. │ └─ggplot2 (local) FUN(X[[i]], ...) 33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 34. │ └─self$draw_panel(...) 35. └─base::.handleSimpleError(...) 36. └─rlang (local) h(simpleError(msg, call)) 37. └─handlers[1L] 38. └─cli::cli_abort(...) 39. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... Expectedgg1d(...)to run without any errors. i Actually got a <rlang_error> with text: Problem while converting geom to grob. i Error occurred in the 1st layer. Caused by error indraw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre")[ FAIL 9 | WARN 1 | SKIP 2 | PASS 47 ] Error: Test failures Execution halted ```
ggalign
- Version: 1.0.2
- GitHub: https://github.com/Yunuuuu/ggalign
- Source code: https://github.com/cran/ggalign
- Date/Publication: 2025-05-14 14:00:08 UTC
- Number of recursive dependencies: 56
Run revdepcheck::cloud_details(, "ggalign") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggalign-Ex.R’ failed The error most likely occurred in:
Name: align_dendro
Title: Plot dendrogram tree
Aliases: align_dendro
** Examples
align_dendro will always add a plot area
... 37. │ ├─S7::S7_dispatch() 38. │ └─ggplot2 (local)
method(+, list(ggplot2::ggplot, class_any))(...) 39. │ └─ggplot2:::add_ggplot(e1, e2, e2name) 40. │ ├─ggplot2::ggplot_add(object, p, objectname) 41. │ └─ggalign:::ggplot_add.ggalign_design(object, p, objectname) 42. └─base::.handleSimpleError(...) 43. └─rlang (local) h(simpleError(msg, call)) 44. └─handlers[1L] 45. └─rlang::cnd_signal(e) Execution halted ``` -
checking tests ... ERROR
Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... • plot-align/reorder-left-reverse.svg • plot-align/reorder-left.svg • plot-align/reorder-right.svg • plot-align/reorder-top-reverse.svg • plot-align/reorder-top-within-group.svg • plot-align/reorder-top.svg • plot-align/stack-no-data-dendrogram-input.svg • plot-align/stack-no-data-hclust-input.svg Error: Test failures Execution halted -
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.ggalign_default_expansion: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.FacetSector: function(object, plot, object_name)
... function(plot, ...) ggplot_build.ggalign_facet_sector_plot: function(plot)
ggplot_build: function(plot, ...) ggplot_build.ggalign_heatmap: function(plot) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
-
checking Rd cross-references ... WARNING ``` Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’ Missing link or links in Rd file 'scheme_theme.Rd': ‘[ggplot2:+.gg]{+.gg()}’
See section 'Cross-references' in the 'Writing R Extensions' manual. ```
-
checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'scheme_theme.Rd': scheme_theme Code: function(..., line, rect, text, title, point, polygon, geom, spacing, margins, aspect.ratio, axis.title, axis.title.x, axis.title.x.top, axis.title.x.bottom, axis.title.y, axis.title.y.left, axis.title.y.right, axis.text, axis.text.x, axis.text.x.top, axis.text.x.bottom, axis.text.y, axis.text.y.left, axis.text.y.right, axis.text.theta, axis.text.r, axis.ticks, axis.ticks.x, axis.ticks.x.top, ... strip.text.y.right, strip.switch.pad.grid, strip.switch.pad.wrap, complete = FALSE, validate = TRUE) Argument names in code not in docs: point polygon geom spacing margins legend.key.justification panel.widths panel.heights Mismatches in argument names (first 3): Position: 6 Code: point Docs: aspect.ratio Position: 7 Code: polygon Docs: axis.title Position: 8 Code: geom Docs: axis.title.x
Newly fixed
- checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’
In both
- checking package dependencies ... NOTE
Packages which this enhances but not available for checking: 'patchwork', 'ggrastr', 'maftools'
GGally
- Version: 2.2.1
- GitHub: https://github.com/ggobi/ggally
- Source code: https://github.com/cran/GGally
- Date/Publication: 2024-02-14 00:53:32 UTC
- Number of recursive dependencies: 143
Run revdepcheck::cloud_details(, "GGally") for more info
Newly broken
- checking whether package ‘GGally’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/GGally/new/GGally.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘GGally’ ...
** package ‘GGally’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in eval(exprs[i], envir) : object 'is.rel' not found
Error: unable to load R code in package ‘GGally’
Execution halted
ERROR: lazy loading failed for package ‘GGally’
* removing ‘/tmp/workdir/GGally/new/GGally.Rcheck/GGally’
CRAN
* installing *source* package ‘GGally’ ...
** package ‘GGally’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GGally)
gganimate
- Version: 1.0.9
- GitHub: https://github.com/thomasp85/gganimate
- Source code: https://github.com/cran/gganimate
- Date/Publication: 2024-02-27 14:00:03 UTC
- Number of recursive dependencies: 93
Run revdepcheck::cloud_details(, "gganimate") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(gganimate) Loading required package: ggplot2 > > test_check("gganimate") [ FAIL 2 | WARN 4 | SKIP 1 | PASS 4 ]
... 22. └─self$extract_key(...) 23. └─ggplot2 (local) extract_key(...) 24. └─Guide$extract_key(scale, aesthetic, ...) 25. └─ggplot2 (local) extract_key(...) 26. └─scale$map(breaks) 27. └─ggplot2 (local) map(..., self = self)
[ FAIL 2 | WARN 4 | SKIP 1 | PASS 4 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘gganimate.Rmd’ using rmarkdown -
checking S3 generic/method consistency ... WARNING ``` ggplot_build: function(plot, ...) ggplot_build.gganim: function(plot)
ggplot_add: function(object, plot, ...) ggplot_add.ExitFactory: function(object, plot, object_name)
... function(object, plot, ...) ggplot_add.View: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.EaseAes: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
ggblend
- Version: 0.1.0
- GitHub: https://github.com/mjskay/ggblend
- Source code: https://github.com/cran/ggblend
- Date/Publication: 2023-05-22 08:30:05 UTC
- Number of recursive dependencies: 59
Run revdepcheck::cloud_details(, "ggblend") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggblend) > > test_check("ggblend") [ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════ ...
actual$mappingis an S3 object of class , a listexpected$mappingis an S7 object of class Backtrace: ▆ 1. └─ggblend:::expect_equal_layer(...) at test-operation-adjust.R:19:3 2. └─testthat::expect_equal(...) at tests/testthat/helper-layer.R:26:3[ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ] Error: Test failures Execution halted ```
ggborderline
- Version: 0.2.0
- GitHub: https://github.com/wurli/ggborderline
- Source code: https://github.com/cran/ggborderline
- Date/Publication: 2022-10-25 13:45:14 UTC
- Number of recursive dependencies: 42
Run revdepcheck::cloud_details(, "ggborderline") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggborderline-Ex.R’ failed The error most likely occurred in:
Name: geom_borderpath
Title: Connect observations
Aliases: geom_borderpath geom_borderline geom_borderstep
** Examples
require(ggplot2) ... 5. └─ggplot2::build_ggplot(plot) 6. ├─S7::S7_dispatch() 7. └─ggplot2 (local)
method(build_ggplot, ggplot2::ggplot)(...) 8. └─npscales$set_palettes(plot@theme) 9. └─ggplot2 (local) set_palettes(..., self = self) 10. ├─scales::as_discrete_pal(elem) 11. └─scales:::as_discrete_pal.default(elem) 12. └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.") 13. └─rlang::abort(...) Execution halted ```
ggbrain
- Version: 0.9.0
- GitHub: https://github.com/michaelhallquist/ggbrain
- Source code: https://github.com/cran/ggbrain
- Date/Publication: 2025-03-20 01:30:02 UTC
- Number of recursive dependencies: 71
Run revdepcheck::cloud_details(, "ggbrain") for more info
Newly broken
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘ggbrain_aesthetics.Rmd’ using rmarkdown --- finished re-building ‘ggbrain_aesthetics.Rmd’
--- re-building ‘ggbrain_introduction.Rmd’ using rmarkdown ```
-
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.ggbrain_panel: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggbrain_label: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggbrain_layer: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
In both
- checking installed package size ... NOTE
installed size is 10.1Mb sub-directories of 1Mb or more: doc 1.6Mb extdata 2.2Mb libs 5.5Mb
ggbreak
- Version: 0.1.4
- GitHub: https://github.com/YuLab-SMU/ggbreak
- Source code: https://github.com/cran/ggbreak
- Date/Publication: 2025-02-04 17:50:10 UTC
- Number of recursive dependencies: 61
Run revdepcheck::cloud_details(, "ggbreak") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggbreak-Ex.R’ failed The error most likely occurred in:
Name: scale_wrap
Title: scale-wrap
Aliases: scale_wrap
** Examples
library(ggplot2) library(ggbreak) p <- ggplot(economics, aes(x=date, y = unemploy, colour = uempmed)) + + geom_line() p + scale_wrap(n=4) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘ggbreak.Rmd’ using rmarkdown
Quitting from ggbreak.Rmd:61-78 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
UseMethod(): ! no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')"Backtrace: ...
Error: processing vignette 'ggbreak.Rmd' failed with diagnostics: no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')" --- failed re-building ‘ggbreak.Rmd’
SUMMARY: processing the following file failed: ‘ggbreak.Rmd’
Error: Vignette re-building failed. Execution halted ```
-
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.wrap_params: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggcut_params: function(object, plot, object_name)
... function(object, plot, ...) ggplot_add.ggbreak: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.gg: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
ggbump
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggbump
- Date/Publication: 2020-04-24 16:00:02 UTC
- Number of recursive dependencies: 50
Run revdepcheck::cloud_details(, "ggbump") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggbump) > > test_check("ggbump") [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Failure ('test-numeric_inputs.R:21:3'): multiplication works ──────────────── ... %>% class() not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test-numeric_inputs.R:26:3'): multiplication works ──────────────── ... %>% class() not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] Error: Test failures Execution halted ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggdark
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/ggdark
- Date/Publication: 2019-01-11 17:30:06 UTC
- Number of recursive dependencies: 42
Run revdepcheck::cloud_details(, "ggdark") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggdark-Ex.R’ failed The error most likely occurred in:
Name: dark_mode
Title: Activate dark mode on a 'ggplot2' theme
Aliases: dark_mode
** Examples
library(ggplot2) ...
p1 <- ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) + + geom_point()
p1 # theme returned by theme_get() p1 + dark_mode() # activate dark mode on theme returned by theme_get() Error in match(x, table, nomatch = 0L) : 'match' requires vector arguments Calls: dark_mode -> %in% Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggdark) > > test_check("ggdark") [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Error ('test_dark_mode.R:10:1'): (code run outside of
test_that()) ──────── Error inmatch(x, table, nomatch = 0L): 'match' requires vector arguments Backtrace: ▆ 1. └─ggdark::dark_mode(light_theme) at test_dark_mode.R:10:1 2. └─geoms[["GeomPoint"]]$default_aes$colour %in% ...[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggdemetra
- Version: 0.2.8
- GitHub: https://github.com/AQLT/ggdemetra
- Source code: https://github.com/cran/ggdemetra
- Date/Publication: 2024-02-04 14:50:02 UTC
- Number of recursive dependencies: 51
Run revdepcheck::cloud_details(, "ggdemetra") for more info
Newly broken
- checking whether package ‘ggdemetra’ can be installed ... WARNING
Found the following significant warnings: Warning: `aes_()` was deprecated in ggplot2 3.0.0. See ‘/tmp/workdir/ggdemetra/new/ggdemetra.Rcheck/00install.out’ for details.
ggDoE
- Version: 0.8
- GitHub: https://github.com/toledo60/ggDoE
- Source code: https://github.com/cran/ggDoE
- Date/Publication: 2024-02-10 04:50:02 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "ggDoE") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggDoE-Ex.R’ failed The error most likely occurred in:
Name: gg_lm
Title: Regression Diagnostic Plots with ggplot2
Aliases: gg_lm
** Examples
model <- lm(mpg ~ wt + am + gear, data = mtcars) gg_lm(model) Warning:
fortify(<lm>)was deprecated in ggplot2 3.6.0. ℹ Please usebroom::augment(<lm>)instead. ℹ The deprecated feature was likely used in the ggplot2 package. Please report the issue at https://github.com/tidyverse/ggplot2/issues. Error: Can't find method for generic&(e1, e2): - e1: - e2: Execution halted ```
ggDoubleHeat
- Version: 0.1.2
- GitHub: https://github.com/PursuitOfDataScience/ggDoubleHeat
- Source code: https://github.com/cran/ggDoubleHeat
- Date/Publication: 2023-08-24 21:00:04 UTC
- Number of recursive dependencies: 55
Run revdepcheck::cloud_details(, "ggDoubleHeat") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggDoubleHeat-Ex.R’ failed The error most likely occurred in:
Name: geom_heat_circle
Title: Heatcircle
Aliases: geom_heat_circle
** Examples
... + y = rep(c("d", "e", "f"), 3), + outside_values = rep(c(1,5,7),3), + inside_values = rep(c(2,3,4),3))
ggplot(data, aes(x,y)) + + geom_heat_circle(outside = outside_values, + inside = inside_values) Error in scale_title(title) : object 'outside_values' not found Calls: ... extract_params -> -> make_title -> scale_title Execution halted ```
ggeasy
- Version: 0.1.5
- GitHub: https://github.com/jonocarroll/ggeasy
- Source code: https://github.com/cran/ggeasy
- Date/Publication: 2024-11-03 05:50:02 UTC
- Number of recursive dependencies: 90
Run revdepcheck::cloud_details(, "ggeasy") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggeasy-Ex.R’ failed The error most likely occurred in:
Name: easy_add_legend_title
Title: Easily add legend title(s)
Aliases: easy_add_legend_title
** Examples
...
Add legend title to a specific aesthetic
ggplot(mtcars, aes(wt, mpg, colour = cyl, size = hp)) + + geom_point() + easy_add_legend_title(col = "Number of Cylinders")
Add legend title to all aesthetics
ggplot(mtcars, aes(wt, mpg, colour = cyl)) + + geom_point() + easy_add_legend_title("Number of Cylinders") Error: object is invalid: - labels cannot contain duplicate names (colour, linetype, shape, and size). Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggeasy) > > test_check("ggeasy") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 151 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════ ... 8. └─S7::validate(object, recursive = !parent_validated)
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 151 ] Deleting unused snapshots: • labs/labels-attrib.svg • labs/labels-manual.svg • labs/labels-mytitle.svg • labs/labels-y-col.svg Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘shortcuts.Rmd’ using rmarkdown -
checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.easy_labs: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
ggEDA
- Version: 0.1.0
- GitHub: https://github.com/CCICB/ggEDA
- Source code: https://github.com/cran/ggEDA
- Date/Publication: 2025-05-07 12:00:02 UTC
- Number of recursive dependencies: 92
Run revdepcheck::cloud_details(, "ggEDA") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggEDA-Ex.R’ failed The error most likely occurred in:
Name: ggstack
Title: AutoPlot an entire data.frame
Aliases: ggstack
** Examples
... 31. │ └─base::lapply(...) 32. │ └─ggplot2 (local) FUN(X[[i]], ...) 33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 34. │ └─self$draw_panel(...) 35. └─base::.handleSimpleError(...) 36. └─rlang (local) h(simpleError(msg, call)) 37. └─handlers[1L] 38. └─cli::cli_abort(...) 39. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... Expectedggstack(...)to run without any errors. i Actually got a <rlang_error> with text: Problem while converting geom to grob. i Error occurred in the 1st layer. Caused by error indraw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre")[ FAIL 11 | WARN 12 | SKIP 2 | PASS 114 ] Error: Test failures Execution halted ```
ggedit
- Version: 0.4.1
- GitHub: https://github.com/yonicd/ggedit
- Source code: https://github.com/cran/ggedit
- Date/Publication: 2024-03-04 14:40:02 UTC
- Number of recursive dependencies: 91
Run revdepcheck::cloud_details(, "ggedit") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggedit-Ex.R’ failed The error most likely occurred in:
Name: compare
Title: compare
Aliases: compare
** Examples
compare(ggplot2::theme_bw(),ggplot2::theme_get()) Error in as.vector(x, "list") : cannot coerce type 'object' to vector of type 'list' Calls: compare ... themeFetchFull -> lapply -> as.list -> as.list.default Execution halted ```
ggfields
- Version: 0.0.6
- GitHub: https://github.com/pepijn-devries/ggfields
- Source code: https://github.com/cran/ggfields
- Date/Publication: 2024-02-26 14:40:03 UTC
- Number of recursive dependencies: 100
Run revdepcheck::cloud_details(, "ggfields") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggfields-Ex.R’ failed The error most likely occurred in:
Name: angle_correction
Title: Calculate correction for angle in the plot coordinate system
Aliases: angle_correction
** Examples
Create a data.frame with some xy-coordinates and all angles pointing North (0 degrees)
... + default_crs = 4326 + ) + )
When plotting as lon-lat, the angle correction will be zero
angle_correction(d, params_mockup, ggplot2::coord_sf(default_crs = 4326)) Error in panel_params$guides$get_guide(aesthetics) : attempt to apply non-function Calls: angle_correction ... train_panel_guides -> -> train_panel_guides Execution halted ```
ggfixest
- Version: 0.3.0
- GitHub: https://github.com/grantmcdermott/ggfixest
- Source code: https://github.com/cran/ggfixest
- Date/Publication: 2025-05-14 02:20:02 UTC
- Number of recursive dependencies: 77
Run revdepcheck::cloud_details(, "ggfixest") for more info
Newly broken
- checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> ## Throttle CPU threads if R CMD check (for CRAN)
>
> if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) {
-
fixest
- if (requireNamespace("fixest", quietly = TRUE)) {
- library(fixest)
- setFixest_nthreads(1) ... call| expect_snapshot_plot(p19a, label = "ggiplot_multi_complex_kitchen_iid") diff| 1774 info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png ----- FAILED[]: test_ggiplot.R<193--193> call| expect_snapshot_plot(p19b, label = "ggiplot_multi_complex_kitchen_iid") diff| 1774 info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png Error: 5 out of 111 tests failed In addition: There were 11 warnings (use warnings() to see them) Execution halted ```
-
ggfocus
- Version: 1.0.0
- GitHub: https://github.com/Freguglia/ggfocus
- Source code: https://github.com/cran/ggfocus
- Date/Publication: 2020-01-23 13:20:02 UTC
- Number of recursive dependencies: 52
Run revdepcheck::cloud_details(, "ggfocus") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggfocus-Ex.R’ failed The error most likely occurred in:
Name: ggfocus
Title: (Deprecated) Sets focus scales to an existing 'ggplot' object
Aliases: ggfocus
** Examples
library(ggplot2) ... p <- ggplot(iris,aes(x=Sepal.Length,y=Petal.Length)) + geom_point() ggfocus(p, Species, "versicolor") The function 'ggfocus()' is deprecated, consider using the family scale_*_focus() instead. Warning:
select_()was deprecated in dplyr 0.7.0. ℹ Please useselect()instead. ℹ The deprecated feature was likely used in the ggfocus package. Please report the issue at https://github.com/Freguglia/ggfocus/issues. Error in scale_title(title) : object 'Species' not found Calls: ... extract_params -> -> make_title -> scale_title Execution halted ``` -
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.ggfocus_fill: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggfocus_shape: function(object, plot, object_name)
... function(object, plot, ...) ggplot_add.ggfocus_size: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggfocus_linetype: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggforce
- Version: 0.4.2
- GitHub: https://github.com/thomasp85/ggforce
- Source code: https://github.com/cran/ggforce
- Date/Publication: 2024-02-19 11:00:02 UTC
- Number of recursive dependencies: 67
Run revdepcheck::cloud_details(, "ggforce") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggforce-Ex.R’ failed The error most likely occurred in:
Name: facet_matrix
Title: Facet by different data columns
Aliases: facet_matrix
** Examples
Standard use:
ggplot(mpg) + + geom_point(aes(x = .panel_x, y = .panel_y)) + + facet_matrix(vars(displ, cty, hwy)) Error in get(x, envir = ns, inherits = FALSE) : object 'check_labeller' not found Calls: facet_matrix -> -> get Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 27.3Mb sub-directories of 1Mb or more: R 1.0Mb help 1.2Mb libs 25.0Mb
ggformula
- Version: 0.12.0
- GitHub: https://github.com/ProjectMOSAIC/ggformula
- Source code: https://github.com/cran/ggformula
- Date/Publication: 2023-11-09 12:30:07 UTC
- Number of recursive dependencies: 119
Run revdepcheck::cloud_details(, "ggformula") for more info
Newly broken
- checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'gf_lines.Rd': gf_hline Code: function(object = NULL, gformula = NULL, data = NULL, ..., yintercept, color, linetype, linewidth, alpha, xlab, ylab, title, subtitle, caption, position = "identity", show.legend = NA, show.help = NULL, inherit = FALSE, environment = parent.frame()) Docs: function(object = NULL, gformula = NULL, data = NULL, ..., yintercept, color, linetype, linewidth, alpha, xlab, ylab, title, subtitle, caption, show.legend = NA, ... xintercept, color, linetype, linewidth, alpha, xlab, ylab, title, subtitle, caption, show.legend = NA, show.help = NULL, inherit = FALSE, environment = parent.frame()) Argument names in code not in docs: position Mismatches in argument names (first 3): Position: 15 Code: position Docs: show.legend Position: 16 Code: show.legend Docs: show.help Position: 17 Code: show.help Docs: inherit
In both
- checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘akima’, ‘ggforce’
ggfortify
- Version: 0.4.17
- GitHub: https://github.com/sinhrks/ggfortify
- Source code: https://github.com/cran/ggfortify
- Date/Publication: 2024-04-17 04:30:04 UTC
- Number of recursive dependencies: 121
Run revdepcheck::cloud_details(, "ggfortify") for more info
Newly broken
-
checking tests ... ERROR ``` Running ‘test-all.R’ Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > > suppressWarnings(RNGversion("3.5.0")) > set.seed(1, sample.kind = "Rejection") > > test_check('ggfortify') Loading required package: ggfortify ...
x[3]: "#595959FF" y[3]: "grey35"
x[4]: "#595959FF" y[4]: "grey35"
[ FAIL 5 | WARN 13 | SKIP 48 | PASS 734 ] Error: Test failures Execution halted ```
ggfun
- Version: 0.1.8
- GitHub: https://github.com/YuLab-SMU/ggfun
- Source code: https://github.com/cran/ggfun
- Date/Publication: 2024-12-03 10:20:02 UTC
- Number of recursive dependencies: 59
Run revdepcheck::cloud_details(, "ggfun") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.facet_set: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.scatter_rect: function(object, plot, object_name)
... function(object, plot, ...) ggplot_add.segmentC: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.volpoint: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
ggfx
- Version: 1.0.1
- GitHub: https://github.com/thomasp85/ggfx
- Source code: https://github.com/cran/ggfx
- Date/Publication: 2022-08-22 08:00:06 UTC
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "ggfx") for more info
Newly broken
-
checking S3 generic/method consistency ... WARNING ``` ggplot_gtable: function(plot) ggplot_gtable.filtered_gtable: function(data)
ggplot_build: function(plot, ...) ggplot_build.filtered_ggplot: function(plot) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
In both
- checking Rd files ... NOTE
checkRd: (-1) render_context.Rd:42: Lost braces; missing escapes or markup? 42 | \item{xmin, ymin, xmax, ymax}{Boundaries of the area in pixels. {0,0} is the | ^
gggenomes
- Version: 1.0.1
- GitHub: https://github.com/thackl/gggenomes
- Source code: https://github.com/cran/gggenomes
- Date/Publication: 2024-08-30 11:40:02 UTC
- Number of recursive dependencies: 109
Run revdepcheck::cloud_details(, "gggenomes") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘gggenomes-Ex.R’ failed The error most likely occurred in:
Name: add_feats
Title: Add different types of tracks
Aliases: add_feats add_links add_subfeats add_sublinks add_clusters
add_tracks
** Examples
... + add_feats(repeats = emale_tirs) + + geom_seq() + geom_feat() Warning: The
sizeargument ofelement_line()is deprecated as of ggplot2 3.4.0. ℹ Please use thelinewidthargument instead. ℹ The deprecated feature was likely used in the gggenomes package. Please report the issue at https://github.com/thackl/gggenomes/issues. Error in UseMethod("add_feats") : no applicable method for 'add_feats' applied to an object of class "NULL" Calls: %>% -> add_feats Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘emales.Rmd’ using rmarkdown --- finished re-building ‘emales.Rmd’
--- re-building ‘flip.Rmd’ using rmarkdown
Quitting from flip.Rmd:16-44 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
UseMethod(): ...Error: processing vignette 'gggenomes.Rmd' failed with diagnostics: no applicable method for 'track_info' applied to an object of class "NULL" --- failed re-building ‘gggenomes.Rmd’
SUMMARY: processing the following files failed: ‘flip.Rmd’ ‘gggenomes.Rmd’
Error: Vignette re-building failed. Execution halted ```
ggghost
- Version: 0.2.2
- GitHub: https://github.com/jonocarroll/ggghost
- Source code: https://github.com/cran/ggghost
- Date/Publication: 2025-04-15 05:50:07 UTC
- Number of recursive dependencies: 46
Run revdepcheck::cloud_details(, "ggghost") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggghost-Ex.R’ failed The error most likely occurred in:
Name: -.gg
Title: Remove a call from a ggghost object
Aliases: -.gg
** Examples
create a ggghost object
...
remove the geom_smooth
z - geom_smooth()
remove the labels
NOTE: argument must be present and able to be
evaluated in scope
z - labs(TRUE) # works Error: object is invalid: - every label must be named. Execution halted ```
gghalves
- Version: 0.1.4
- GitHub: https://github.com/erocoar/gghalves
- Source code: https://github.com/cran/gghalves
- Date/Publication: 2022-11-20 11:40:02 UTC
- Number of recursive dependencies: 49
Run revdepcheck::cloud_details(, "gghalves") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘gghalves-Ex.R’ failed The error most likely occurred in:
Name: geom_half_point
Title: Points with jitter for half geoms.
Aliases: geom_half_point
** Examples
ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) + ... 32. │ └─base::lapply(...) 33. │ └─ggplot2 (local) FUN(X[[i]], ...) 34. │ └─ggplot2 (local) apply_fun(cur_data) 35. │ └─ggplot2 (local) fun(x, ...) 36. └─base::.handleSimpleError(...) 37. └─rlang (local) h(simpleError(msg, call)) 38. └─handlers[1L] 39. └─cli::cli_abort(...) 40. └─rlang::abort(...) Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘gghalves.Rmd’ using rmarkdown
Quitting from gghalves.Rmd:39-42 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gghalves.Rmd' failed with diagnostics: ... ℹ Error occurred in the 1st layer. Caused by error in
fun(): ! argument "layout" is missing, with no default --- failed re-building ‘gghalves.Rmd’SUMMARY: processing the following file failed: ‘gghalves.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘grDevices’ ‘gtable’ All declared Imports should be used.
gghighlight
- Version: 0.4.1
- GitHub: https://github.com/yutannihilation/gghighlight
- Source code: https://github.com/cran/gghighlight
- Date/Publication: 2023-12-16 01:00:02 UTC
- Number of recursive dependencies: 82
Run revdepcheck::cloud_details(, "gghighlight") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘gghighlight-Ex.R’ failed The error most likely occurred in:
Name: gghighlight
Title: Highlight Data With Predicate
Aliases: gghighlight
** Examples
d <- data.frame( ... 15. │ ├─purrr:::with_indexed_errors(...) 16. │ │ └─base::withCallingHandlers(...) 17. │ ├─purrr:::call_with_cleanup(...) 18. │ └─gghighlight (local) .f(.x[[i]], .y[[i]], ...) 19. │ └─gghighlight:::get_default_aes_param(nm, layer$geom, layer$mapping) 20. └─base::.handleSimpleError(...) 21. └─purrr (local) h(simpleError(msg, call)) 22. └─cli::cli_abort(...) 23. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(gghighlight) Loading required package: ggplot2 > > test_check("gghighlight") label_key: type label_key: type ...
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 7 | WARN 24 | SKIP 0 | PASS 159 ] Deleting unused snapshots: • vdiffr/simple-bar-chart-with-facet.svg • vdiffr/simple-line-chart.svg • vdiffr/simple-point-chart.svg Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘gghighlight.Rmd’ using rmarkdown -
checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.gg_highlighter: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
gghourglass
- Version: 0.0.2
- GitHub: https://github.com/pepijn-devries/gghourglass
- Source code: https://github.com/cran/gghourglass
- Date/Publication: 2025-04-05 14:20:02 UTC
- Number of recursive dependencies: 96
Run revdepcheck::cloud_details(, "gghourglass") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘gghourglass-Ex.R’ failed The error most likely occurred in:
Name: AnnotateLunarphase
Title: Annotate ggplot with lunar phases
Aliases: AnnotateLunarphase annotate_lunarphase
Keywords: datasets
** Examples
... 19. │ └─vctrs (local)
<fn>() 20. │ ├─x[i = i] 21. │ └─grid:::[.unit(x = x, i = i) 22. │ └─base::stop(...) 23. └─base::.handleSimpleError(...) 24. └─rlang (local) h(simpleError(msg, call)) 25. └─handlers[1L] 26. └─cli::cli_abort(...) 27. └─rlang::abort(...) Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(gghourglass) > > test_check("gghourglass") NULL [ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ]
... 26. │ └─base::stop(...) 27. └─base::.handleSimpleError(...) 28. └─rlang (local) h(simpleError(msg, call)) 29. └─handlers[1L] 30. └─cli::cli_abort(...) 31. └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ] Error: Test failures Execution halted ```
ggimage
- Version: 0.3.3
- GitHub: https://github.com/GuangchuangYu/ggimage
- Source code: https://github.com/cran/ggimage
- Date/Publication: 2023-06-19 04:10:02 UTC
- Number of recursive dependencies: 56
Run revdepcheck::cloud_details(, "ggimage") for more info
Newly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.bgimage: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
ggiraph
- Version: 0.8.13
- GitHub: https://github.com/davidgohel/ggiraph
- Source code: https://github.com/cran/ggiraph
- Date/Publication: 2025-03-28 10:20:02 UTC
- Number of recursive dependencies: 86
Run revdepcheck::cloud_details(, "ggiraph") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggiraph-Ex.R’ failed The error most likely occurred in:
Name: geom_bar_interactive
Title: Create interactive bars
Aliases: geom_bar_interactive geom_col_interactive
** Examples
add interactive bar -------
... 23. │ └─base::lapply(...) 24. │ └─ggplot2 (local) FUN(X[[i]], ...) 25. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 26. │ └─self$draw_panel(...) 27. └─base::.handleSimpleError(...) 28. └─rlang (local) h(simpleError(msg, call)) 29. └─handlers[1L] 30. └─cli::cli_abort(...) 31. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if (requireNamespace("tinytest", quietly = TRUE)) {
- tinytest::test_package("ggiraph")
- }
test-annotate_interactive.R... 0 tests test-annotate_interactive.R... 0 tests test-annotate_interactive.R... 0 tests ... 33. │ └─base::lapply(...) 34. │ └─ggplot2 (local) FUN(X[[i]], ...) 35. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 36. │ └─self$draw_panel(...) 37. └─base::.handleSimpleError(...) 38. └─rlang (local) h(simpleError(msg, call)) 39. └─handlers[1L] 40. └─cli::cli_abort(...) 41. └─rlang::abort(...) Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 8.1Mb sub-directories of 1Mb or more: R 1.5Mb libs 5.2Mb
ggiraphExtra
- Version: 0.3.0
- GitHub: https://github.com/cardiomoon/ggiraphExtra
- Source code: https://github.com/cran/ggiraphExtra
- Date/Publication: 2020-10-06 07:00:02 UTC
- Number of recursive dependencies: 107
Run revdepcheck::cloud_details(, "ggiraphExtra") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘ggiraphExtra-Ex.R’ failed The error most likely occurred in:
Name: ggBar
Title: Draw an interactive barplot
Aliases: ggBar
** Examples
require(moonBook) ... 24. │ └─base::lapply(...) 25. │ └─ggplot2 (local) FUN(X[[i]], ...) 26. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 27. │ └─self$draw_panel(...) 28. └─base::.handleSimpleError(...) 29. └─rlang (local) h(simpleError(msg, call)) 30. └─handlers[1L] 31. └─cli::cli_abort(...) 32. └─rlang::abort(...) Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘ggPredict.Rmd’ using rmarkdown
gglogger
- Version: 0.1.5
- GitHub: https://github.com/pwwang/gglogger
- Source code: https://github.com/cran/gglogger
- Date/Publication: 2024-10-25 09:10:02 UTC
- Number of recursive dependencies: 42
Run revdepcheck::cloud_details(, "gglogger") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... y[1]: displ, y = hwy))\n" ── Failure ('test-gglogger.R:124:5'): gglogger stringify works ─────────────────code` not equal to "ggplot2::ggplot(ggplot2::mpg) +\n geom_point(aes(x = displ, y = hwy))". 1/1 mismatches x[1]: "ggplot2::ggplot(ggplot2::mpg)" y[1]: "ggplot2::ggplot(ggplot2::mpg) +\n geom_point(aes(x = displ, y = hwy))"[ FAIL 16 | WARN 0 | SKIP 0 | PASS 38 ] Error: Test failures Execution halted ```
ggmap
- Version: 4.0.1
- GitHub: https://github.com/dkahle/ggmap
- Source code: https://github.com/cran/ggmap
- Date/Publication: 2025-04-07 19:40:02 UTC
- Number of recursive dependencies: 62
Run revdepcheck::cloud_details(, "ggmap") for more info
Newly broken
- checking whether package ‘ggmap’ can be installed ... WARNING
Found the following significant warnings: Warning: `aes_()` was deprecated in ggplot2 3.0.0. See ‘/tmp/workdir/ggmap/new/ggmap.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 7.4Mb sub-directories of 1Mb or more: data 7.0Mb
ggmice
- Version: 0.1.0
- GitHub: https://github.com/amices/ggmice
- Source code: https://github.com/cran/ggmice
- Date/Publication: 2023-08-07 14:20:02 UTC
- Number of recursive dependencies: 119
Run revdepcheck::cloud_details(, "ggmice") for more info
Newly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘ggmice.Rmd’ using rmarkdown
ggmosaic
- Version: 0.3.3
- GitHub: https://github.com/haleyjeppson/ggmosaic
- Source code: https://github.com/cran/ggmosaic
- Date/Publication: 2021-02-23 19:50:02 UTC
- Number of recursive dependencies: 73
Run revdepcheck::cloud_details(, "ggmosaic") for more info
Newly broken
- checking whether package ‘ggmosaic’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details.
Newly fixed
- checking dependencies in R code ... NOTE
':::' call which should be '::': ‘scales:::censor’ See the note in ?`:::` about the use of this operator. Unexported object imported by a ':::' call: ‘productplots:::bound’ See the note in ?`:::` about the use of this operator.
Installation
Devel
* installing *source* package ‘ggmosaic’ ...
** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'is.waive' not found
Error: unable to load R code in package ‘ggmosaic’
Execution halted
ERROR: lazy loading failed for package ‘ggmosaic’
* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’
CRAN
* installing *source* package ‘ggmosaic’ ...
** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggmosaic)
ggmulti
- Version: 1.0.7
- GitHub: NA
- Source code: https://github.com/cran/ggmulti
- Date/Publication: 2024-04-09 09:40:05 UTC
- Number of recursive dependencies: 123
Run revdepcheck::cloud_details(, "ggmulti") for more info
Newly broken
- checking whether package ‘ggmulti’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘ggmulti’ ...
** package ‘ggmulti’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'new_aes' not found
Error: unable to load R code in package ‘ggmulti’
Execution halted
ERROR: lazy loading failed for package ‘ggmulti’
* removing ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/ggmulti’
CRAN
* installing *source* package ‘ggmulti’ ...
** package ‘ggmulti’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggmulti)
ggnewscale
- Version: 0.5.1
- GitHub: https://github.com/eliocamp/ggnewscale
- Source code: https://github.com/cran/ggnewscale
- Date/Publication: 2025-02-24 09:00:02 UTC
- Number of recursive dependencies: 58
Run revdepcheck::cloud_details(, "ggnewscale") for more info
Newly broken
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggnewscale) > > test_check("ggnewscale")new_stat_bin2d()usingbins = 30. Pick better valuebinwidth.new_stat_bin2d()usingbins = 30. Pick better valuebinwidth.new_stat_bin2d()usingbins = 30. Pick better valuebinwidth`. ...- └─scales:::as_discrete_pal.default(elem)
- └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.")
- └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 3 ] Deleting unused snapshots: • newscale/guides-outisde-of-scales.svg • newscale/respects-override-aes-2.svg Error: Test failures Execution halted ```
-
checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.new_aes: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
ggpackets
- Version: 0.2.1
- GitHub: https://github.com/dgkf/ggpackets
- Source code: https://github.com/cran/ggpackets
- Date/Publication: 2022-10-10 23:30:02 UTC
- Number of recursive dependencies: 72
Run revdepcheck::cloud_details(, "ggpackets") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘ggpackets-Ex.R’ failed The error most likely occurred in:
Name: ggpacket
Title: A container for lazy ggplot layers
Aliases: ggpacket
** Examples
library(ggplot2) ... + geom_line(...) %+% + geom_point(color = "red", ...) + }
ggplot(mtcars, aes(x = wt, y = mpg)) + + ggpk_func(color = "purple", size = 2, point.size = 4) Error in if (grepl("^Ignoring unknown (parameters|aesthetics):", w$message)) invokeRestart("muffleWarning") : the condition has length > 1 Calls: Ops.S7_object ... withOneRestart -> doWithOneRestart -> signalCondition -> Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘composing-functions.Rmd’ using rmarkdown -
checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.ggpacket: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
ggparallel
- Version: 0.4.0
- GitHub: https://github.com/heike/ggparallel
- Source code: https://github.com/cran/ggparallel
- Date/Publication: 2024-03-09 22:00:02 UTC
- Number of recursive dependencies: 47
Run revdepcheck::cloud_details(, "ggparallel") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ▆
- ├─ggplot2::ggplot_build(test_mtcars_plot) at test-ggparallel.R:12:3
- ├─ggplot2:::ggplot_build.default(test_mtcars_plot)
- │ └─ggplot2::build_ggplot(plot)
- │ └─S7::S7_dispatch()
- └─S7:::method_lookup_error("build_ggplot",
<list>)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted ```
ggpath
- Version: 1.0.2
- GitHub: https://github.com/mrcaseb/ggpath
- Source code: https://github.com/cran/ggpath
- Date/Publication: 2024-08-20 09:30:02 UTC
- Number of recursive dependencies: 64
Run revdepcheck::cloud_details(, "ggpath") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘ggpath-Ex.R’ failed The error most likely occurred in:
Name: element_path
Title: Theme Elements for Image Grobs
Aliases: element_path element_raster
** Examples
library(ggplot2) ... + theme( + plot.caption = element_path(hjust = 1, size = 0.6), + axis.text.y = element_path(size = 1), + axis.title.x = element_path(), + axis.title.y = element_path(vjust = 0.9), + plot.title = element_path(hjust = 0, size = 2, alpha = 0.5), + plot.subtitle = element_path(hjust = 0.9, angle = 45), + ) Error:
objectmust be an , not a S3 Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggpath) > > test_check("ggpath") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 3 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════ ... • geom_lines/p1.svg • geom_lines/p2.svg • geom_lines/p3.svg • geom_lines/p4.svg • geom_lines/p5.svg • theme-elements/p1.svg • theme-elements/p2.svg • theme-elements/p3.svg Error: Test failures Execution halted ```
ggpedigree
- Version: 0.7.0
- GitHub: https://github.com/R-Computing-Lab/ggpedigree
- Source code: https://github.com/cran/ggpedigree
- Date/Publication: 2025-06-10 00:10:02 UTC
- Number of recursive dependencies: 146
Run revdepcheck::cloud_details(, "ggpedigree") for more info
Newly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ── Failure ('test-ggPedigreeInteractive.R:279:3'): ggPedigreeInteractive handles inbreeding ──p_widget_nozyginherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'htmlwidget'. ── Failure ('test-ggPedigreeInteractive.R:294:3'): ggPedigreeInteractive handles inbreeding ──p_nozyginherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'plotly'. ── Failure ('test-ggPedigreeInteractive.R:295:3'): ggPedigreeInteractive handles inbreeding ──p_nozyg` inherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'htmlwidget'.[ FAIL 16 | WARN 14 | SKIP 0 | PASS 281 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘v00_plots.Rmd’ using rmarkdown
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘OpenMx’
ggplot2.utils
- Version: 0.3.2
- GitHub: https://github.com/insightsengineering/ggplot2.utils
- Source code: https://github.com/cran/ggplot2.utils
- Date/Publication: 2024-06-25 21:10:02 UTC
- Number of recursive dependencies: 70
Run revdepcheck::cloud_details(, "ggplot2.utils") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggplot2.utils) Loading required package: ggplot2 > > test_check("ggplot2.utils")
Attaching package: 'dplyr' ... ── Failure ('test-geom_km_ticks.R:10:3'): geom_km_ticks works as expected ────── Names of
first_layer('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill' ── Failure ('test-stat_km.R:10:3'): stat_km works as expected ────────────────── Names offirst_layer('time', 'survival', 'PANEL', 'group', 'x', 'y', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha') don't match 'x', 'y', 'time', 'survival', 'PANEL', 'group', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha' ── Failure ('test-stat_km_ticks.R:10:3'): stat_km_ticks works as expected ────── Names offirst_layer('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill'[ FAIL 4 | WARN 0 | SKIP 7 | PASS 44 ] Error: Test failures Execution halted ```
ggPMX
- Version: 1.2.11
- GitHub: https://github.com/ggPMXdevelopment/ggPMX
- Source code: https://github.com/cran/ggPMX
- Date/Publication: 2023-11-30 16:10:06 UTC
- Number of recursive dependencies: 173
Run revdepcheck::cloud_details(, "ggPMX") for more info
Newly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘ggPMX-guide.Rmd’ using rmarkdown
Quitting from ggPMX-guide.Rmd:24-37 [load_package] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
+.gg: ! 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'Backtrace: ...
Error: processing vignette 'ggPMX-guide.Rmd' failed with diagnostics: 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character' --- failed re-building ‘ggPMX-guide.Rmd’
SUMMARY: processing the following file failed: ‘ggPMX-guide.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
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checking package dependencies ... NOTE
Package suggested but not available for checking: ‘lixoftConnectors’ -
checking installed package size ... NOTE
installed size is 9.0Mb sub-directories of 1Mb or more: doc 1.1Mb help 2.4Mb testdata 4.8Mb
ggpol
- Version: 0.0.7
- GitHub: https://github.com/erocoar/ggpol
- Source code: https://github.com/cran/ggpol
- Date/Publication: 2020-11-08 13:40:02 UTC
- Number of recursive dependencies: 51
Run revdepcheck::cloud_details(, "ggpol") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘ggpol-Ex.R’ failed The error most likely occurred in:
Name: GeomConfmat
Title: Confusion Matrix
Aliases: GeomConfmat geom_confmat stat_confmat
** Examples
x <- sample(LETTERS[seq(4)], 50, replace = TRUE) ... 24. │ └─ggpol (local) draw_panel(...) 25. │ └─base::lapply(GeomText$default_aes[missing_aes], rlang::eval_tidy) 26. │ └─rlang (local) FUN(X[[i]], ...) 27. ├─ggplot2::from_theme(fontsize) 28. └─base::.handleSimpleError(...) 29. └─rlang (local) h(simpleError(msg, call)) 30. └─handlers[1L] 31. └─cli::cli_abort(...) 32. └─rlang::abort(...) Execution halted ```
In both
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checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘dplyr’ ‘grDevices’ All declared Imports should be used. -
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ggprism
- Version: 1.0.6
- GitHub: https://github.com/csdaw/ggprism
- Source code: https://github.com/cran/ggprism
- Date/Publication: 2025-05-17 10:50:02 UTC
- Number of recursive dependencies: 98
Run revdepcheck::cloud_details(, "ggprism") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘ggprism-Ex.R’ failed The error most likely occurred in:
Name: annotation_ticks
Title: Add ticks as ggplot annotation
Aliases: annotation_ticks
** Examples
Generally it is better to use the guide_prism_minor function.
... Please report the issue at https://github.com/csdaw/ggprism/issues. Error in
parent %+replace% t: !%+replace%requires two theme objects Backtrace: ▆ 1. └─ggprism::theme_prism(border = TRUE) 2. └─parent %+replace% t 3. └─cli::cli_abort("{.code %+replace%} requires two theme objects") 4. └─rlang::abort(...) Execution halted ``` -
checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("ggprism")
- }
test-add_pvalue.R............. 0 tests test-add_pvalue.R............. 0 tests ... ℹ It has been replaced by a ggproto system that can be extended. 3: The
sizeargument ofelement_line()is deprecated as of ggplot2 3.4.0. ℹ Please use thelinewidthargument instead. ℹ The deprecated feature was likely used in the ggprism package. Please report the issue at https://github.com/csdaw/ggprism/issues. 4: Thesizeargument ofelement_rect()is deprecated as of ggplot2 3.4.0. ℹ Please use thelinewidthargument instead. ℹ The deprecated feature was likely used in the ggprism package. Please report the issue at https://github.com/csdaw/ggprism/issues. Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘axes.Rmd’ using rmarkdown
Quitting from axes.Rmd:37-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'axes.Rmd' failed with diagnostics:
%+replace%requires two theme objects ...Error: processing vignette 'themes.Rmd' failed with diagnostics:
%+replace%requires two theme objects --- failed re-building ‘themes.Rmd’SUMMARY: processing the following files failed: ‘axes.Rmd’ ‘colours.Rmd’ ‘ggprism.Rmd’ ‘pvalues.Rmd’ ‘themes.Rmd’
Error: Vignette re-building failed. Execution halted ```
ggpubr
- Version: 0.6.0
- GitHub: https://github.com/kassambara/ggpubr
- Source code: https://github.com/cran/ggpubr
- Date/Publication: 2023-02-10 16:20:02 UTC
- Number of recursive dependencies: 88
Run revdepcheck::cloud_details(, "ggpubr") for more info
Newly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggpubr) Loading required package: ggplot2 > > test_check("ggpubr") [ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ]
... [6] 6 - 10 == -4 [7] 19 - 9 == 10 [9] 1 - 7 == -6 [10] 6 - 7 == -1 [11] 13 - 6 == 7 ...
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ] Error: Test failures Execution halted ```
ggquickeda
- Version: 0.3.1
- GitHub: https://github.com/smouksassi/ggquickeda
- Source code: https://github.com/cran/ggquickeda
- Date/Publication: 2024-01-15 10:20:02 UTC
- Number of recursive dependencies: 174
Run revdepcheck::cloud_details(, "ggquickeda") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘ggquickeda-Ex.R’ failed The error most likely occurred in:
Name: ggcontinuousexpdist
Title: Create a continuous exposure fit plot
Aliases: ggcontinuousexpdist
** Examples
Example 1
... Joining with
by = join_by(loopvariable, DOSE, quant_25)Joining withby = join_by(loopvariable, DOSE, quant_75)Joining withby = join_by(loopvariable, DOSE, medexp)a / b + + plot_layout(guides = "collect") & + theme(legend.position = "top") Error: Can't find method for generic&(e1, e2): - e1: - e2: Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘DT’ ‘Formula’ ‘GGally’ ‘Hmisc’ ‘RPostgres’ ‘colourpicker’ ‘ggpmisc’ ‘ggpubr’ ‘glue’ ‘gridExtra’ ‘markdown’ ‘patchwork’ ‘plotly’ ‘quantreg’ ‘shinyFiles’ ‘shinyjqui’ ‘shinyjs’ ‘table1’ ‘zoo’ All declared Imports should be used.
ggraph
- Version: 2.2.1
- GitHub: https://github.com/thomasp85/ggraph
- Source code: https://github.com/cran/ggraph
- Date/Publication: 2024-03-07 12:40:02 UTC
- Number of recursive dependencies: 113
Run revdepcheck::cloud_details(, "ggraph") for more info
Newly broken
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checking examples ... ERROR ``` Running examples in ‘ggraph-Ex.R’ failed The error most likely occurred in:
Name: geom_conn_bundle
Title: Create hierarchical edge bundles between node connections
Aliases: geom_conn_bundle geom_conn_bundle2 geom_conn_bundle0
** Examples
Create a graph of the flare class system
... + ) + + geom_node_point(aes(filter = leaf, colour = class)) + + scale_edge_colour_distiller('', direction = 1, guide = 'edge_direction') + + coord_fixed() + + ggforce::theme_no_axes() Error in get_layer_key(...) : unused argument (list(, , , , , , , 5.5, c(5.5, 5.5, 5.5, 5.5), NULL, , , , NULL, , NULL, , , , , NULL, , NULL, , NULL, , , NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0.5, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0.75, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, , NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, , NULL, 2, NULL, NULL, NULL, 1.2, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0.2, NULL, , NULL, , NULL, "right", NULL, NULL, NULL, "center", NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, 0, , 2, , , NULL, NULL, NULL, , NULL, , NULL, NULL, NULL, NULL, FALSE, NULL, NULL, , , "panel", , , "panel", , "topleft", NULL, NULL, , NULL, NULL, "on", " Calls: ... -> -> process_layers -> Execution halted ```
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘Edges.Rmd’ using rmarkdownchecking S3 generic/method consistency ... WARNING
ggplot_build: function(plot, ...) ggplot_build.ggraph: function(plot) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.In both
- checking installed package size ... NOTE
installed size is 9.0Mb sub-directories of 1Mb or more: R 1.5Mb doc 3.9Mb libs 2.8Mb
ggredist
- Version: 0.0.2
- GitHub: https://github.com/alarm-redist/ggredist
- Source code: https://github.com/cran/ggredist
- Date/Publication: 2022-11-23 11:20:02 UTC
- Number of recursive dependencies: 64
Run
revdepcheck::cloud_details(, "ggredist")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘ggredist-Ex.R’ failed The error most likely occurred in:
Name: geom_district_text
Title: Label Map Regions
Aliases: geom_district_text geom_district_label
stat_district_coordinates StatDistrictCoordinates GeomDistrictText
Keywords: datasets
** Examples
... 25. │ └─coord$transform(data, panel_params) 26. │ └─ggplot2 (local) transform(..., self = self) 27. │ └─ggplot2:::sf_rescale01(data[[geom_column(data)]], x_range, y_range) 28. │ └─sf::st_normalize(x, c(x_range[1], y_range[1], x_range[2], y_range[2])) 29. └─base::.handleSimpleError(...) 30. └─rlang (local) h(simpleError(msg, call)) 31. └─handlers[1L] 32. └─cli::cli_abort(...) 33. └─rlang::abort(...) Execution halted ```
ggResidpanel
- Version: 0.3.0
- GitHub: NA
- Source code: https://github.com/cran/ggResidpanel
- Date/Publication: 2019-05-31 23:20:04 UTC
- Number of recursive dependencies: 111
Run
revdepcheck::cloud_details(, "ggResidpanel")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘ggResidpanel-Ex.R’ failed The error most likely occurred in:
Name: resid_interact
Title: Panel of Interactive Versions of Diagnostic Residual Plots.
Aliases: resid_interact
** Examples
Fit a model to the penguin data
penguin_model <- lme4::lmer(heartrate ~ depth + duration + (1|bird), data = penguins)
Create the default interactive panel
resid_interact(penguin_model) Error in pm[[2]] : subscript out of bounds Calls: resid_interact ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggResidpanel) > > test_check("ggResidpanel") [ FAIL 1 | WARN 4 | SKIP 9 | PASS 18 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════ ... 42. │ └─ggplot2 (local) draw_group(..., self = self) 43. └─base::.handleSimpleError(...) 44. └─rlang (local) h(simpleError(msg, call)) 45. └─handlers[1L] 46. └─cli::cli_abort(...) 47. └─rlang::abort(...)
[ FAIL 1 | WARN 4 | SKIP 9 | PASS 18 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown
ggRtsy
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggRtsy
- Date/Publication: 2023-09-15 19:12:05 UTC
- Number of recursive dependencies: 65
Run
revdepcheck::cloud_details(, "ggRtsy")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggplot2) > library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat': ... 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 14. │ └─vctrs::vec_as_location(i, n, names = names, arg = arg, call = call) 15. └─vctrs (local)
<fn>() 16. └─vctrs:::stop_subscript_oob(...) 17. └─vctrs:::stop_subscript(...) 18. └─rlang::abort(...)[ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘Vignette.Rmd’ using rmarkdown
Quitting from Vignette.Rmd:47-49 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Vignette.Rmd' failed with diagnostics: ... Can't extract rows past the end. ℹ Location 1 doesn't exist. ℹ There are only 0 rows. --- failed re-building ‘Vignette.Rmd’
SUMMARY: processing the following file failed: ‘Vignette.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 19 marked UTF-8 strings
ggseas
- Version: 0.5.4
- GitHub: https://github.com/ellisp/ggseas
- Source code: https://github.com/cran/ggseas
- Date/Publication: 2018-06-12 13:33:33 UTC
- Number of recursive dependencies: 62
Run
revdepcheck::cloud_details(, "ggseas")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggseas) Loading required package: ggplot2 > > test_check("ggseas") [ FAIL 1 | WARN 1 | SKIP 0 | PASS 9 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-tsdf.R:22:4'): ggplot can draw graphic with tsdf output ────── class(tmp2) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 9 ] Error: Test failures Execution halted ```
ggseqplot
- Version: 0.8.6
- GitHub: https://github.com/maraab23/ggseqplot
- Source code: https://github.com/cran/ggseqplot
- Date/Publication: 2025-05-06 22:10:02 UTC
- Number of recursive dependencies: 127
Run
revdepcheck::cloud_details(, "ggseqplot")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘ggseqplot-Ex.R’ failed The error most likely occurred in:
Name: ggseqrfplot
Title: Relative Frequency Sequence Plot
Aliases: ggseqrfplot
** Examples
Load additional library for fine-tuning the plots
...
... with ggseqrfplot
ggseqrfplot(biofam.seq, weighted = FALSE, diss = diss, k = 12, grp.meth="first") [>] Using k=12 frequency groups with grp.meth='first' [>] Pseudo/medoid-based-R2: 0.4620155 [>] Pseudo/medoid-based-F statistic: 6.870317, p-value: 3.09994e-08 Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggseqplot) Loading required package: TraMineR
TraMineR stable version 2.2-11 (Built: 2024-12-09) Website: http://traminer.unige.ch Please type 'citation("TraMineR")' for citation information. ... Backtrace: ▆ 1. ├─testthat::expect_s3_class(ggseqtrplot(biofam.seq), "ggplot") at test-ggseqtrplot.R:35:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─ggseqplot::ggseqtrplot(biofam.seq)
[ FAIL 3 | WARN 16 | SKIP 0 | PASS 117 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘ggseqplot.Rmd’ using rmarkdown
ggside
- Version: 0.3.1
- GitHub: https://github.com/jtlandis/ggside
- Source code: https://github.com/cran/ggside
- Date/Publication: 2024-03-01 09:12:37 UTC
- Number of recursive dependencies: 72
Run
revdepcheck::cloud_details(, "ggside")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘ggside-Ex.R’ failed The error most likely occurred in:
Name: geom_xsidebar
Title: Side bar Charts
Aliases: geom_xsidebar geom_*sidebar geom_ysidebar geom_xsidecol
geom_ysidecol
** Examples
... 14. │ └─base::withCallingHandlers(...) 15. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 16. └─l$compute_statistic(d, layout) 17. └─ggside (local) compute_statistic(..., self = self) 18. └─ggplot2 (local) ggproto_parent_method(self = self, data = data, layout = layout) 19. └─self$stat$setup_params(data, self$stat_params) 20. └─ggplot2 (local) setup_params(..., self = self) 21. └─cli::cli_abort("{.fn {snake_class(self)}} must only have an {.field x} {.emph or} {.field y} aesthetic.") 22. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR
Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggplot2) > library(ggside) Registered S3 method overwritten by 'ggside': method from +.gg ggplot2 > ... • side_layers/label.svg • side_layers/violin.svg • vdiff_irisScatter/collapsed-histo.svg • vdiff_irisScatter/facetgrid-collapsed-density.svg • vdiff_irisScatter/facetgrid-histo.svg • vdiff_irisScatter/facetgrid-side-density.svg • vdiff_irisScatter/stacked-side-density.svg • vdiff_irisScatter/yside-histo.svg Error: Test failures Execution halted -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘ggside_aes_mapping.Rmd’ using rmarkdown
Quitting from ggside_aes_mapping.Rmd:42-46 [ggside_updated_aes_usage] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ggside_aes_mapping.Rmd' failed with diagnostics: Problem while setting up geom. ℹ Error occurred in the 2nd layer. Caused by error in
ggproto_parent_method(): !geom_xsidedensity()requires the following missing aesthetics: y. --- failed re-building ‘ggside_aes_mapping.Rmd’--- re-building ‘ggside_basic_usage.Rmd’ using rmarkdown ```
-
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.ggside_scale: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggside_layer: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggside_options: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
-
checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'geom_xsideabline.Rd': geom_xsidehline Code: function(mapping = NULL, data = NULL, position = "identity", ..., yintercept, na.rm = FALSE, show.legend = NA) Docs: function(mapping = NULL, data = NULL, ..., yintercept, na.rm = FALSE, show.legend = NA) Argument names in code not in docs: position Mismatches in argument names (first 3): Position: 3 Code: position Docs: ... ... FALSE, show.legend = NA, inherit.aes = TRUE, orientation = "y") Argument names in code not in docs: quantile.colour quantile.color quantile.linetype quantile.linewidth Mismatches in argument names (first 3): Position: 6 Code: trim Docs: draw_quantiles Position: 7 Code: bounds Docs: trim Position: 8 Code: quantile.colour Docs: bounds Mismatches in argument default values: Name: 'draw_quantiles' Code: deprecated() Docs: NULL -
checking R code for possible problems ... NOTE
geom_xsidelabel: no visible global function definition for ‘deprecated’ geom_xsideviolin: no visible global function definition for ‘deprecated’ geom_ysidelabel: no visible global function definition for ‘deprecated’ geom_ysideviolin: no visible global function definition for ‘deprecated’ Undefined global functions or variables: deprecated
ggspatial
- Version: 1.1.9
- GitHub: https://github.com/paleolimbot/ggspatial
- Source code: https://github.com/cran/ggspatial
- Date/Publication: 2023-08-17 15:32:38 UTC
- Number of recursive dependencies: 104
Run
revdepcheck::cloud_details(, "ggspatial")for more infoNewly broken
-
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.fixed_plot_aspect: function(object, plot, object_name)
ggplot_build: function(plot, ...) ggplot_build.gg_fixed_plot_aspect: function(plot) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
ggstatsplot
- Version: 0.13.1
- GitHub: https://github.com/IndrajeetPatil/ggstatsplot
- Source code: https://github.com/cran/ggstatsplot
- Date/Publication: 2025-05-09 23:40:02 UTC
- Number of recursive dependencies: 172
Run
revdepcheck::cloud_details(, "ggstatsplot")for more infoNewly broken
- checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # graphics engine changed in this version, and so snapshots generated on
> # previous R version won't work
> if (getRversion() >= "4.4.0") {
- library(testthat)
- suppressPackageStartupMessages(library(ggstatsplot))
- test_check("ggstatsplot")
- } ... • pairwise-ggsignif/within-non-parametric-all.svg • pairwise-ggsignif/within-non-parametric-only-non-significant.svg • pairwise-ggsignif/within-non-parametric-only-significant.svg • pairwise-ggsignif/within-parametric-all.svg • pairwise-ggsignif/within-parametric-only-significant.svg • pairwise-ggsignif/within-robust-all.svg • pairwise-ggsignif/within-robust-only-non-significant.svg • pairwise-ggsignif/within-robust-only-significant.svg Error: Test failures Execution halted ```
ggstream
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggstream
- Date/Publication: 2021-05-06 07:50:03 UTC
- Number of recursive dependencies: 51
Run
revdepcheck::cloud_details(, "ggstream")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggstream) > > test_check("ggstream") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-geom_stream.R:4:3'): geom_stream ───────────────────────────── class(...) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘tidyr’ All declared Imports should be used.
ggswissmaps
- Version: 0.1.1
- GitHub: https://github.com/gibonet/ggswissmaps
- Source code: https://github.com/cran/ggswissmaps
- Date/Publication: 2016-10-29 10:48:24
- Number of recursive dependencies: 68
Run
revdepcheck::cloud_details(, "ggswissmaps")for more infoNewly broken
-
checking whether package ‘ggswissmaps’ can be installed ... WARNING
Found the following significant warnings: Warning: `aes_string()` was deprecated in ggplot2 3.0.0. See ‘/tmp/workdir/ggswissmaps/new/ggswissmaps.Rcheck/00install.out’ for details. -
checking whether the namespace can be loaded with stated dependencies ... NOTE
`` Warning:aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")` for more information. ℹ The deprecated feature was likely used in the ggswissmaps package. Please report the issue to the authors.A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file. ```
ggtangle
- Version: 0.0.6
- GitHub: NA
- Source code: https://github.com/cran/ggtangle
- Date/Publication: 2024-12-18 14:30:06 UTC
- Number of recursive dependencies: 76
Run
revdepcheck::cloud_details(, "ggtangle")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘ggtangle.Rmd’ using rmarkdown -
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.cnet_label: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.layer_edge: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
ggtern
- Version: 3.5.0
- GitHub: NA
- Source code: https://github.com/cran/ggtern
- Date/Publication: 2024-03-24 21:50:02 UTC
- Number of recursive dependencies: 39
Run
revdepcheck::cloud_details(, "ggtern")for more infoNewly broken
- checking whether package ‘ggtern’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details.
Newly fixed
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘chemometrics’
In both
- checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘sp’
Installation
Devel
* installing *source* package ‘ggtern’ ... ** package ‘ggtern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Error in get(x, envir = ns, inherits = FALSE) : object 'is.zero' not found Error: unable to load R code in package ‘ggtern’ Execution halted ERROR: lazy loading failed for package ‘ggtern’ * removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’CRAN
* installing *source* package ‘ggtern’ ... ** package ‘ggtern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggtern)ggtext
- Version: 0.1.2
- GitHub: https://github.com/wilkelab/ggtext
- Source code: https://github.com/cran/ggtext
- Date/Publication: 2022-09-16 11:36:07 UTC
- Number of recursive dependencies: 76
Run
revdepcheck::cloud_details(, "ggtext")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘plotting_text.Rmd’ using rmarkdown
ggtibble
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/ggtibble
- Date/Publication: 2024-06-19 12:50:02 UTC
- Number of recursive dependencies: 72
Run
revdepcheck::cloud_details(, "ggtibble")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview ...
- │ └─rlang::eval_bare(expr, quo_get_env(quo))
- ├─ggtibble::new_gglist(list(ggplot2::labs("foo")))
- └─ggplot2::labs("foo")
- └─ggplot2::class_labels(args)
- └─S7::new_object(labels)
- └─S7::validate(object, recursive = !parent_validated)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 59 ] Error: Test failures Execution halted ```
ggtime
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ggtime
- Date/Publication: 2025-06-10 09:10:02 UTC
- Number of recursive dependencies: 70
Run
revdepcheck::cloud_details(, "ggtime")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ▆
- ├─ggplot2::ggplot_build(p[[1]]) at test-plot-helpers.R:192:3
- ├─ggplot2:::ggplot_build.default(p[[1]])
- │ └─ggplot2::build_ggplot(plot)
- │ └─S7::S7_dispatch()
- └─S7:::method_lookup_error("build_ggplot",
<named list>)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ] Error: Test failures Execution halted ```
ggVennDiagram
- Version: 1.5.2
- GitHub: https://github.com/gaospecial/ggVennDiagram
- Source code: https://github.com/cran/ggVennDiagram
- Date/Publication: 2024-02-20 08:10:02 UTC
- Number of recursive dependencies: 94
Run
revdepcheck::cloud_details(, "ggVennDiagram")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘VennCalculator.Rmd’ using rmarkdown --- finished re-building ‘VennCalculator.Rmd’
--- re-building ‘fully-customed.Rmd’ using rmarkdown ```
In both
- checking installed package size ... NOTE
installed size is 11.1Mb sub-directories of 1Mb or more: doc 9.5Mb help 1.1Mb
ggview
- Version: 0.2.1
- GitHub: https://github.com/idmn/ggview
- Source code: https://github.com/cran/ggview
- Date/Publication: 2024-10-02 17:00:10 UTC
- Number of recursive dependencies: 44
Run
revdepcheck::cloud_details(, "ggview")for more infoNewly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.canvas: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
grafify
- Version: 5.0.0.1
- GitHub: https://github.com/ashenoy-cmbi/grafify
- Source code: https://github.com/cran/grafify
- Date/Publication: 2025-03-10 22:50:02 UTC
- Number of recursive dependencies: 111
Run
revdepcheck::cloud_details(, "grafify")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(grafify) Loading required package: ggplot2 > library(rlang)
Attaching package: 'rlang'
... Backtrace: ▆ 1. └─testthat::expect_match(db2$labels$y, "PI") at test-plot_befafter_colors.R:37:3 2. └─base::stopifnot(is.character(act$val)) ── Failure ('test-plot_qqline.R:14:3'): Check QQ plots ───────────────────────── as.character(db1$labels$y) is empty.
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 180 ] Error: Test failures Execution halted ```
In both
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checking installed package size ... NOTE
installed size is 5.6Mb sub-directories of 1Mb or more: help 5.3Mb -
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘gratia’
graphPAF
- Version: 2.0.0
- GitHub: https://github.com/johnfergusonNUIG/graphPAF
- Source code: https://github.com/cran/graphPAF
- Date/Publication: 2023-12-21 00:50:06 UTC
- Number of recursive dependencies: 47
Run
revdepcheck::cloud_details(, "graphPAF")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘graphPAF-Ex.R’ failed The error most likely occurred in:
Name: plot.SAF_summary
Title: Produce plots of sequential and average PAF
Aliases: plot.SAF_summary
** Examples
library(splines) ... + riskfactor_vec = c("urban.rural","occupational.exposure"),ci=FALSE) plot(out) Warning in fortify(data, ...) : Arguments in
...must be used. ✖ Problematic argument: • size = point.size ℹ Did you misspell an argument name? Error: Can't find method for generic+(e1, e2): - e1: - e2: Execution halted ```
gratia
- Version: 0.10.0
- GitHub: https://github.com/gavinsimpson/gratia
- Source code: https://github.com/cran/gratia
- Date/Publication: 2024-12-19 19:10:02 UTC
- Number of recursive dependencies: 153
Run
revdepcheck::cloud_details(, "gratia")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘gratia-Ex.R’ failed The error most likely occurred in:
Name: appraise
Title: Model diagnostic plots
Aliases: appraise appraise.gam appraise.lm
** Examples
load_mgcv() ...
change the ggplot theme for all panels
library("ggplot2") appraise(mod, seed = 42, + point_col = "steelblue", point_alpha = 0.4, + line_col = "black" + ) & theme_minimal() Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR
Running ‘test-all.R’ Running the tests in ‘tests/test-all.R’ failed. Complete output: > ## Test `gratia` using the `testthat` package > > ## Setup > library("testthat") > library("gratia") > > ## Runs the tests in tests/testthat ... • penalty/draw-penalty-single-smooths-user-continuous-fill.svg • rootograms/draw-gaussian-rootogram.svg • rootograms/draw-neg-bin-rootogram.svg • rootograms/draw-neg-bin-sqrt-rootogram.svg • rootograms/draw-neg-bin-standing-rootogram.svg • rootograms/draw-neg-bin-suspended-rootogram.svg • soap-films/draw-gam-so-soap-film.svg • soap-films/draw-smooth-estimates-so-soap-film.svg Error: Test failures Execution halted
Greymodels
- Version: 2.0.1
- GitHub: https://github.com/havishaJ/Greymodels
- Source code: https://github.com/cran/Greymodels
- Date/Publication: 2022-12-05 12:42:35 UTC
- Number of recursive dependencies: 86
Run
revdepcheck::cloud_details(, "Greymodels")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘Greymodels-Ex.R’ failed The error most likely occurred in:
Name: Plots
Title: plots
Aliases: plots plotrm plotsmv1 plotsmv2 plotsigndgm plots_mdbgm12
** Examples
# Plots - EPGM (1, 1) model ... + geom_point(data = set4, aes(x = CI, y = y), shape = 23, color = "black") + + geom_line(data = xy1, aes(x = x, y = y,color = "Raw Data")) + + geom_line(data = xy2, aes(x = x, y = y,color = "Fitted&Forecasts")) + + geom_line(data = set3, aes(x = CI, y = y,color = "LowerBound"), linetype=2) + + geom_line(data = set4, aes(x = CI, y = y,color = "UpperBound"), linetype=2) + + scale_color_manual(name = "Label",values = colors) r <- ggplotly(p) Error in pm[[2]] : subscript out of bounds Calls: ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
GRShiny
- Version: 1.0.0
- GitHub: https://github.com/sooyongl/GRShiny
- Source code: https://github.com/cran/GRShiny
- Date/Publication: 2023-05-03 18:40:06 UTC
- Number of recursive dependencies: 152
Run
revdepcheck::cloud_details(, "GRShiny")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GRShiny) > > test_check("GRShiny")
F1 =~ NAy1+l1y1+l2*y2
... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-gendata.r:73:3'): Plotting functions work ────────────────────
resis not TRUEactual: FALSEexpected: TRUE[ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) runGRM.Rd:24: Lost braces 24 | from \code{\link{mirt}} or code{\linkS4class{lavaan}} from from | ^
grwat
- Version: 0.0.4
- GitHub: https://github.com/tsamsonov/grwat
- Source code: https://github.com/cran/grwat
- Date/Publication: 2023-10-27 11:40:12 UTC
- Number of recursive dependencies: 97
Run
revdepcheck::cloud_details(, "grwat")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > suppressPackageStartupMessages(library(grwat)) > > test_check("grwat") [ FAIL 7 | WARN 4 | SKIP 1 | PASS 165 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════ ... ── Failure ('test-gr_plot_matrix.R:17:3'): Matrix ggplot has the correct content ──
plthas type 'object', not 'list'. ── Failure ('test-gr_plot_ridge.R:9:3'): Ridgeline plot has the correct content ──plthas type 'object', not 'list'. ── Failure ('test-gr_plot_tests.R:10:3'): Tests plot has the correct content ───plthas type 'object', not 'list'.[ FAIL 7 | WARN 4 | SKIP 1 | PASS 165 ] Error: Test failures Execution halted ```
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- checking installed package size ... NOTE
installed size is 5.3Mb sub-directories of 1Mb or more: doc 1.6Mb libs 2.6Mb
gtExtras
- Version: 0.6.0
- GitHub: https://github.com/jthomasmock/gtExtras
- Source code: https://github.com/cran/gtExtras
- Date/Publication: 2025-05-29 04:50:02 UTC
- Number of recursive dependencies: 105
Run
revdepcheck::cloud_details(, "gtExtras")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(gtExtras) Loading required package: gt
Attaching package: 'gt'
The following object is masked from 'package:testthat': ... 44. │ └─base::stop(...) 45. └─base::.handleSimpleError(...) 46. └─rlang (local) h(simpleError(msg, call)) 47. └─handlers[1L] 48. └─cli::cli_abort(...) 49. └─rlang::abort(...)
[ FAIL 6 | WARN 4 | SKIP 19 | PASS 104 ] Error: Test failures Execution halted ```
guideR
- Version: 0.4.0
- GitHub: https://github.com/larmarange/guideR
- Source code: https://github.com/cran/guideR
- Date/Publication: 2025-04-22 12:00:02 UTC
- Number of recursive dependencies: 154
Run
revdepcheck::cloud_details(, "guideR")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘guideR-Ex.R’ failed The error most likely occurred in:
Name: plot_inertia_from_tree
Title: Plot inertia, absolute loss and relative loss from a
classification tree
Aliases: plot_inertia_from_tree get_inertia_from_tree
Keywords: tree
** Examples
... 11 11 38.5 -2.96 -0.0713 12 12 36.8 -1.68 -0.0436 13 13 36.7 -0.113 -0.00307 14 14 32.7 -4.02 -0.109 15 15 31.6 -1.10 -0.0336 plot_inertia_from_tree(hc) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR
`` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview ... ── Failure ('test-plot_inertia_from_tree.R:6:3'): plot_inertia_from_tree() does not produce an error ── Expectedplot_inertia_from_tree(hc)to run without any errors. i Actually got a <S7_error_method_not_found> with text: Can't find method for generic&(e1, e2)`: - e1: - e2:[ FAIL 1 | WARN 34 | SKIP 4 | PASS 60 ] Error: Test failures Execution halted ```
harmony
- Version: 1.2.3
- GitHub: https://github.com/immunogenomics/harmony
- Source code: https://github.com/cran/harmony
- Date/Publication: 2024-11-27 23:50:02 UTC
- Number of recursive dependencies: 210
Run
revdepcheck::cloud_details(, "harmony")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘Seurat.Rmd’ using rmarkdown Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| ... **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************|
In both
- checking installed package size ... NOTE
installed size is 14.8Mb sub-directories of 1Mb or more: data 5.0Mb doc 2.5Mb libs 7.1Mb
hatchR
- Version: 0.3.2
- GitHub: https://github.com/bmait101/hatchR
- Source code: https://github.com/cran/hatchR
- Date/Publication: 2025-03-05 15:40:02 UTC
- Number of recursive dependencies: 91
Run
revdepcheck::cloud_details(, "hatchR")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...plot_geoms(actual) not identical to c("GeomPoint", "GeomLine", "GeomHline", "GeomHline") (expected`).names(actual)is a character vector ('geom_point', 'geom_line', 'geom_hline', 'geom_hline...4')names(expected)is absent ── Failure ('test-plot_phenology.R:10:3'): plot_phenology works ────────────────phas type 'object', not 'list'.[ FAIL 4 | WARN 0 | SKIP 0 | PASS 35 ] Error: Test failures Execution halted ```
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- checking installed package size ... NOTE
installed size is 8.7Mb sub-directories of 1Mb or more: data 6.5Mb doc 1.9Mb
healthyR
- Version: 0.2.2
- GitHub: https://github.com/spsanderson/healthyR
- Source code: https://github.com/cran/healthyR
- Date/Publication: 2024-07-01 13:20:02 UTC
- Number of recursive dependencies: 145
Run
revdepcheck::cloud_details(, "healthyR")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘getting-started.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 6.6Mb sub-directories of 1Mb or more: data 2.5Mb doc 3.7Mb
healthyR.ai
- Version: 0.1.1
- GitHub: https://github.com/spsanderson/healthyR.ai
- Source code: https://github.com/cran/healthyR.ai
- Date/Publication: 2025-04-24 11:40:17 UTC
- Number of recursive dependencies: 203
Run
revdepcheck::cloud_details(, "healthyR.ai")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘healthyR.ai-Ex.R’ failed The error most likely occurred in:
Name: pca_your_recipe
Title: Perform PCA
Aliases: pca_your_recipe
** Examples
suppressPackageStartupMessages(library(timetk)) ... + step_rm(matches("(iso$)|(xts$)|(hour)|(min)|(sec)|(am.pm)"))
output_list <- pca_your_recipe(rec_obj, .data = data_tbl) Warning: ! The following columns have zero variance so scaling cannot be used: date_col_day, date_col_mday, date_col_mweek, and date_col_mday7. ℹ Consider using ?step_zv (
?recipes::step_zv()) to remove those columns before normalizing. Error in pm[[2]] : subscript out of bounds Calls: pca_your_recipe -> -> ggplotly.ggplot -> gg2list Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘auto-kmeans.Rmd’ using rmarkdown --- finished re-building ‘auto-kmeans.Rmd’
--- re-building ‘getting-started.Rmd’ using rmarkdown
Quitting from getting-started.Rmd:106-113 [pca_your_rec] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ... 2. ├─plotly::ggplotly(loadings_plt) 3. └─plotly:::ggplotly.ggplot(loadings_plt) 4. └─plotly::gg2list(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Error: processing vignette 'getting-started.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘getting-started.Rmd’
--- re-building ‘kmeans-umap.Rmd’ using rmarkdown ```
healthyR.ts
- Version: 0.3.1
- GitHub: https://github.com/spsanderson/healthyR.ts
- Source code: https://github.com/cran/healthyR.ts
- Date/Publication: 2024-10-11 23:00:03 UTC
- Number of recursive dependencies: 209
Run
revdepcheck::cloud_details(, "healthyR.ts")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘healthyR.ts-Ex.R’ failed The error most likely occurred in:
Name: tidy_fft
Title: Tidy Style FFT
Aliases: tidy_fft
** Examples
suppressPackageStartupMessages(library(dplyr)) ... a <- tidy_fft( + .data = data_tbl, + .value_col = value, + .date_col = date_col, + .harmonics = 3, + .frequency = 12 + ) Error in pm[[2]] : subscript out of bounds Calls: tidy_fft -> -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘getting-started.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 6.3Mb sub-directories of 1Mb or more: doc 5.3Mb
heatmaply
- Version: 1.5.0
- GitHub: https://github.com/talgalili/heatmaply
- Source code: https://github.com/cran/heatmaply
- Date/Publication: 2023-10-06 20:50:02 UTC
- Number of recursive dependencies: 108
Run
revdepcheck::cloud_details(, "heatmaply")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(heatmaply) Loading required package: plotly Loading required package: ggplot2
Attaching package: 'plotly'
... 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. ├─heatmaply:::predict_colors(ggplotly(g), plot_method = "ggplot") 7. ├─plotly::ggplotly(g) 8. └─plotly:::ggplotly.ggplot(g) 9. └─plotly::gg2list(...)
[ FAIL 58 | WARN 0 | SKIP 0 | PASS 193 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘heatmaply.Rmd’ using rmarkdown
Quitting from heatmaply.Rmd:108-111 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of boundsBacktrace: ...
Error: processing vignette 'heatmaply.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘heatmaply.Rmd’
SUMMARY: processing the following file failed: ‘heatmaply.Rmd’
Error: Vignette re-building failed. Execution halted ```
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checking installed package size ... NOTE
installed size is 5.5Mb sub-directories of 1Mb or more: doc 5.1Mb -
checking Rd files ... NOTE
checkRd: (-1) heatmaply.Rd:282: Lost braces 282 | row and column dendrograms. The default uses stats{reorder.dendrogram}} | ^ checkRd: (-1) heatmapr.Rd:93: Lost braces 93 | \item{reorderfun}{function(d, w) of dendrogram and weights for reordering the row and column dendrograms. The default uses stats{reorder.dendrogram}} | ^ checkRd: (-1) is.plotly.Rd:16: Lost braces 16 | Helpful for the plot_method in link{heatmaply}. | ^
hesim
- Version: 0.5.5
- GitHub: https://github.com/hesim-dev/hesim
- Source code: https://github.com/cran/hesim
- Date/Publication: 2024-09-18 23:10:02 UTC
- Number of recursive dependencies: 103
Run
revdepcheck::cloud_details(, "hesim")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(hesim) > > test_check("hesim") sample = 1 sample = 2 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ] ... ── Failure ('test-plot.R:95:3'): autoplot.stateprobs() allows confidence intervals ── p$labels$fill not equal to "strategy_id". target is NULL, current is character ── Failure ('test-plot.R:99:3'): autoplot.stateprobs() allows confidence intervals ── p$labels$fill not equal to "strategy_id". target is NULL, current is character
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ] Error: Test failures Execution halted ```
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- checking installed package size ... NOTE
installed size is 35.9Mb sub-directories of 1Mb or more: R 1.5Mb doc 2.2Mb libs 30.8Mb
hmsidwR
- Version: 1.1.2
- GitHub: https://github.com/Fgazzelloni/hmsidwR
- Source code: https://github.com/cran/hmsidwR
- Date/Publication: 2024-11-13 15:00:02 UTC
- Number of recursive dependencies: 175
Run
revdepcheck::cloud_details(, "hmsidwR")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘hmsidwR.Rmd’ using rmarkdown
Quitting from hmsidwR.Rmd:51-84 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of bounds...
Error: processing vignette 'hmsidwR.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘hmsidwR.Rmd’
SUMMARY: processing the following file failed: ‘hmsidwR.Rmd’
Error: Vignette re-building failed. Execution halted ```
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checking installed package size ... NOTE
installed size is 6.2Mb sub-directories of 1Mb or more: data 2.0Mb doc 4.0Mb -
checking data for non-ASCII characters ... NOTE
Note: found 1686 marked UTF-8 strings
hrbrthemes
- Version: 0.8.7
- GitHub: NA
- Source code: https://github.com/cran/hrbrthemes
- Date/Publication: 2024-03-04 00:20:02 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "hrbrthemes")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘test-all.R’ Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > test_check("hrbrthemes") Loading required package: hrbrthemes [ FAIL 1 | WARN 0 | SKIP 2 | PASS 9 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-hrbrthemes.R:71:3', 'test-themes.R:4:3' ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hrbrthemes.R:16:3'): we can do something ─────────────────────
gg_check(gg_tmp)did not produce any messages.[ FAIL 1 | WARN 0 | SKIP 2 | PASS 9 ] Deleting unused snapshots: • themes/theme-ipsum-rc.svg • themes/theme-ipsum.svg Error: Test failures Execution halted ```
HVT
- Version: 25.2.4
- GitHub: https://github.com/Mu-Sigma/HVT
- Source code: https://github.com/cran/HVT
- Date/Publication: 2025-06-10 12:40:21 UTC
- Number of recursive dependencies: 208
Run
revdepcheck::cloud_details(, "HVT")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘HVT-Ex.R’ failed The error most likely occurred in:
Name: clustHVT
Title: Performing Hierarchical Clustering Analysis
Aliases: clustHVT
Keywords: Clustering_Analysis
** Examples
... scoring <- scoreHVT(dataset, hvt.results, analysis.plots = TRUE, names.column = dataset[,1]) Scale for colour is already present. Adding another scale for colour, which will replace the existing scale. Scale for x is already present. Adding another scale for x, which will replace the existing scale. Scale for y is already present. Adding another scale for y, which will replace the existing scale. Error in pm[[2]] : subscript out of bounds Calls: scoreHVT Execution halted ```
hyperoverlap
- Version: 1.1.1
- GitHub: NA
- Source code: https://github.com/cran/hyperoverlap
- Date/Publication: 2021-08-10 08:30:05 UTC
- Number of recursive dependencies: 105
Run
revdepcheck::cloud_details(, "hyperoverlap")for more infoNewly broken
- checking whether package ‘hyperoverlap’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘hyperoverlap’ See ‘/tmp/workdir/hyperoverlap/new/hyperoverlap.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 6.5Mb sub-directories of 1Mb or more: doc 6.3Mb
hypervolume
- Version: 3.1.5
- GitHub: https://github.com/bblonder/hypervolume
- Source code: https://github.com/cran/hypervolume
- Date/Publication: 2025-01-17 20:50:16 UTC
- Number of recursive dependencies: 142
Run
revdepcheck::cloud_details(, "hypervolume")for more infoNewly broken
- checking whether package ‘hypervolume’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘hypervolume’ See ‘/tmp/workdir/hypervolume/new/hypervolume.Rcheck/00install.out’ for details.
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- checking installed package size ... NOTE
installed size is 6.4Mb sub-directories of 1Mb or more: doc 2.8Mb libs 2.4Mb
hypsoLoop
- Version: 0.2.0
- GitHub: NA
- Source code: https://github.com/cran/hypsoLoop
- Date/Publication: 2022-02-08 09:00:02 UTC
- Number of recursive dependencies: 93
Run
revdepcheck::cloud_details(, "hypsoLoop")for more infoNewly broken
- checking whether package ‘hypsoLoop’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘hypsoLoop’ See ‘/tmp/workdir/hypsoLoop/new/hypsoLoop.Rcheck/00install.out’ for details.
ImHD
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/ImHD
- Date/Publication: 2023-09-12 06:12:44 UTC
- Number of recursive dependencies: 38
Run
revdepcheck::cloud_details(, "ImHD")for more infoNewly broken
- checking whether package ‘ImHD’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘ImHD’ See ‘/tmp/workdir/ImHD/new/ImHD.Rcheck/00install.out’ for details.
implicitMeasures
- Version: 0.2.1
- GitHub: NA
- Source code: https://github.com/cran/implicitMeasures
- Date/Publication: 2022-02-16 13:40:13 UTC
- Number of recursive dependencies: 83
Run
revdepcheck::cloud_details(, "implicitMeasures")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(implicitMeasures) > > test_check("implicitMeasures") [ FAIL 7 | WARN 2 | SKIP 2 | PASS 69 ]
... 5. └─implicitMeasures::multi_dscore(iat_data, ds = "error-inflation") 6. └─ggplot2::geom_violin(draw_quantiles = TRUE) 7. └─ggplot2:::check_numeric(draw_quantiles) 8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) 9. └─ggplot2:::stop_input_type(...) 10. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 7 | WARN 2 | SKIP 2 | PASS 69 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘IAT-example.Rmd’ using rmarkdown
imputeTS
- Version: 3.3
- GitHub: https://github.com/SteffenMoritz/imputeTS
- Source code: https://github.com/cran/imputeTS
- Date/Publication: 2022-09-09 06:52:55 UTC
- Number of recursive dependencies: 110
Run
revdepcheck::cloud_details(, "imputeTS")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("imputeTS") Loading required package: imputeTS [ FAIL 43 | WARN 18 | SKIP 52 | PASS 411 ]
══ Skipped tests (52) ══════════════════════════════════════════════════════════ • On CRAN (52): 'test-ggplot_na_distribution.R:59:3', ...
expected: TRUE ── Failure ('test-ggplot_na_imputations.R:81:5'): Check that all parameters of plot run without error ── is.list(...) is not TRUEactual: FALSEexpected: TRUE[ FAIL 43 | WARN 18 | SKIP 52 | PASS 411 ] Error: Test failures Execution halted ```
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checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘Cheat_Sheet_imputeTS.pdf.asis’ using asis --- finished re-building ‘Cheat_Sheet_imputeTS.pdf.asis’
--- re-building ‘imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx’ using tex Error: processing vignette 'imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx' failed with diagnostics: Running 'texi2dvi' on 'imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx' failed. LaTeX errors: ! LaTeX Error: File `etex.sty' not found.
...
! Emergency stop.
l.5 \usepackage [utf8]{inputenc}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx’
--- re-building ‘gallery_visualizations.Rmd’ using rmarkdown ```
-
checking installed package size ... NOTE
installed size is 5.7Mb sub-directories of 1Mb or more: data 2.0Mb doc 1.1Mb libs 1.9Mb
incidence
- Version: 1.7.5
- GitHub: https://github.com/reconhub/incidence
- Source code: https://github.com/cran/incidence
- Date/Publication: 2024-05-31 10:10:02 UTC
- Number of recursive dependencies: 65
Run
revdepcheck::cloud_details(, "incidence")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘incidence-Ex.R’ failed The error most likely occurred in:
Name: get_fit
Title: Accessors for 'incidence_fit' objects
Aliases: get_fit get_fit.incidence_fit get_fit.incidence_fit_list
get_info get_info.incidence_fit get_info.incidence_fit_list
** Examples
... + })} Loading required package: outbreaks dat <- ebola_sim$linelist$date_of_onset sex <- ebola_sim$linelist$gender i.sex <- incidence(dat, interval = 7, group = sex) fits <- fit_optim_split(i.sex, separate_split = TRUE) Error in names(out$plot) <- names(res) : invalid to use names()<- on an S4 object of class 'ggplot2::ggplot' Calls: withAutoprint ... source -> withVisible -> eval -> eval -> fit_optim_split Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(incidence) > > test_check("incidence") [ FAIL 1 | WARN 0 | SKIP 18 | PASS 213 ]
══ Skipped tests (18) ══════════════════════════════════════════════════════════ ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-accessors.R:156:1'): (code run outside of
test_that()) ─────── Error innames(out$plot) <- names(res): invalid to use names()<- on an S4 object of class 'ggplot2::ggplot' Backtrace: ▆ 1. └─incidence::fit_optim_split(i.sex.o) at test-accessors.R:156:1[ FAIL 1 | WARN 0 | SKIP 18 | PASS 213 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘conversions.Rmd’ using rmarkdown
infer
- Version: 1.0.8
- GitHub: https://github.com/tidymodels/infer
- Source code: https://github.com/cran/infer
- Date/Publication: 2025-04-14 17:20:02 UTC
- Number of recursive dependencies: 125
Run
revdepcheck::cloud_details(, "infer")for more infoNewly broken
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checking tests ... ERROR
Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... • visualize/viz-assume-z-p-val-right.svg • visualize/viz-assume-z.svg • visualize/viz-fit-bare.svg • visualize/viz-fit-conf-int.svg • visualize/viz-fit-no-h0.svg • visualize/viz-fit-p-val-both.svg • visualize/viz-fit-p-val-left.svg • visualize/viz-fit-p-val-right.svg Error: Test failures Execution halted -
checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.infer_layer: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
inferCSN
- Version: 1.1.7
- GitHub: https://github.com/mengxu98/inferCSN
- Source code: https://github.com/cran/inferCSN
- Date/Publication: 2025-03-30 17:00:02 UTC
- Number of recursive dependencies: 186
Run
revdepcheck::cloud_details(, "inferCSN")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘inferCSN-Ex.R’ failed The error most likely occurred in:
Name: plot_dynamic_networks
Title: Plot dynamic networks
Aliases: plot_dynamic_networks
** Examples
data("example_matrix") ... + )
plot_dynamic_networks( + network, + celltypes_order = celltypes_order, + plot_type = "ggplotly" + ) Error in pm[[2]] : subscript out of bounds Calls: plot_dynamic_networks -> -> ggplotly.ggplot -> gg2list Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 27.7Mb sub-directories of 1Mb or more: data 2.0Mb libs 25.1Mb
inTextSummaryTable
- Version: 3.3.3
- GitHub: https://github.com/openanalytics/inTextSummaryTable
- Source code: https://github.com/cran/inTextSummaryTable
- Date/Publication: 2024-06-12 18:30:02 UTC
- Number of recursive dependencies: 109
Run
revdepcheck::cloud_details(, "inTextSummaryTable")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(inTextSummaryTable) > > test_check("inTextSummaryTable") [ FAIL 59 | WARN 0 | SKIP 0 | PASS 881 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... Error in
geom_point(mapping = do.call(aes, c(aesBase, list(y = sym("meanVar")), if (!is.null(colorVar) & useShape) list(shape = sym("colorVar")))), position = pd, size = sizePoint, data = data): Problem while setting up geom aesthetics. ℹ Error occurred in the 2nd layer. Caused by error inlist_sizes(): !x$sizemust be a vector, not a object.[ FAIL 59 | WARN 0 | SKIP 0 | PASS 881 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘inTextSummaryTable-advanced.Rmd’ using rmarkdown --- finished re-building ‘inTextSummaryTable-advanced.Rmd’
--- re-building ‘inTextSummaryTable-aesthetics.Rmd’ using rmarkdown
Quitting from inTextSummaryTable-aesthetics.Rmd:210-224 [aesthetics-defaultsVisualization] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ... Error: processing vignette 'inTextSummaryTable-visualization.Rmd' failed with diagnostics: The
plot.margintheme element must be a vector of length 4 --- failed re-building ‘inTextSummaryTable-visualization.Rmd’SUMMARY: processing the following files failed: ‘inTextSummaryTable-aesthetics.Rmd’ ‘inTextSummaryTable-visualization.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 10.2Mb sub-directories of 1Mb or more: doc 9.7Mb
inventorize
- Version: 1.1.2
- GitHub: NA
- Source code: https://github.com/cran/inventorize
- Date/Publication: 2025-05-28 13:20:02 UTC
- Number of recursive dependencies: 68
Run
revdepcheck::cloud_details(, "inventorize")for more infoNewly broken
- checking whether package ‘inventorize’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘inventorize’ ... ** package ‘inventorize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Error in pm[[2]] : subscript out of bounds Error: unable to load R code in package ‘inventorize’ Execution halted ERROR: lazy loading failed for package ‘inventorize’ * removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’CRAN
* installing *source* package ‘inventorize’ ... ** package ‘inventorize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning in qgamma(service_level, alpha, beta) : NaNs produced ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inventorize)iNZightTS
- Version: 2.0.0
- GitHub: https://github.com/iNZightVIT/iNZightTS
- Source code: https://github.com/cran/iNZightTS
- Date/Publication: 2024-01-17 06:20:02 UTC
- Number of recursive dependencies: 90
Run
revdepcheck::cloud_details(, "iNZightTS")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(iNZightTS) > > test_check("iNZightTS") [ FAIL 6 | WARN 3 | SKIP 0 | PASS 91 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ▆ 1. ├─base::plot(tm, names(tm)[-1], xlim = c(2000, 2011)) at test_subset.R:44:5 2. └─iNZightTS:::plot.inz_ts(tm, names(tm)[-1], xlim = c(2000, 2011)) 3. ├─(function(.) structure(., use.plotly = ggplotable(.)))(...) 4. │ └─base::structure(., use.plotly = ggplotable(.)) 5. └─S7:::Ops.S7_object(...)
[ FAIL 6 | WARN 3 | SKIP 0 | PASS 91 ] Error: Test failures Execution halted ```
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘plotly’
IRon
- Version: 0.1.4
- GitHub: https://github.com/nunompmoniz/IRon
- Source code: https://github.com/cran/IRon
- Date/Publication: 2023-01-20 07:20:06 UTC
- Number of recursive dependencies: 81
Run
revdepcheck::cloud_details(, "IRon")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘IRon-Ex.R’ failed The error most likely occurred in:
Name: sera
Title: Squared Error-Relevance Area (SERA)
Aliases: sera
** Examples
library(IRon) ... 19. │ └─self$stat$setup_params(data, self$stat_params) 20. │ └─ggplot2 (local) setup_params(...) 21. │ └─base::match.fun(method) 22. │ └─base::get(as.character(FUN), mode = "function", envir = envir) 23. └─base::.handleSimpleError(...) 24. └─rlang (local) h(simpleError(msg, call)) 25. └─handlers[1L] 26. └─cli::cli_abort(...) 27. └─rlang::abort(...) Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 6.7Mb sub-directories of 1Mb or more: data 6.5Mb
isoorbi
- Version: 1.3.1
- GitHub: https://github.com/isoverse/isoorbi
- Source code: https://github.com/cran/isoorbi
- Date/Publication: 2024-08-27 05:10:03 UTC
- Number of recursive dependencies: 120
Run
revdepcheck::cloud_details(, "isoorbi")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
... ── Failure ('test_plotting_functions.R:107:3'): orbi_plot_raw_data() tests ───── orbi_plot_raw_data(df, y = "ratio") has type 'object', not 'list'. ── Failure ('test_plotting_functions.R:139:3'): orbi_plot_isotopocule_coverage() tests ──
fighas type 'object', not 'list'. ── Failure ('test_shotnoise_functions.R:94:3'): orbi_plot_shot_noise() tests ─── orbi_plot_shot_noise(df, "time.min") has type 'object', not 'list'.[ FAIL 5 | WARN 1 | SKIP 0 | PASS 350 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 6.3Mb sub-directories of 1Mb or more: doc 2.0Mb extdata 3.3Mb
jskm
- Version: 0.5.11
- GitHub: https://github.com/jinseob2kim/jstable
- Source code: https://github.com/cran/jskm
- Date/Publication: 2025-03-20 03:10:02 UTC
- Number of recursive dependencies: 108
Run
revdepcheck::cloud_details(, "jskm")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘jskm.Rmd’ using rmarkdown
karel
- Version: 0.1.1
- GitHub: https://github.com/mpru/karel
- Source code: https://github.com/cran/karel
- Date/Publication: 2022-03-26 21:50:02 UTC
- Number of recursive dependencies: 86
Run
revdepcheck::cloud_details(, "karel")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘karel-Ex.R’ failed The error most likely occurred in:
Name: acciones
Title: Acciones que Karel puede realizar
Aliases: acciones avanzar girar_izquierda poner_coso juntar_coso
girar_derecha darse_vuelta
** Examples
... 1. └─karel::ejecutar_acciones() 2. ├─base::suppressWarnings(...) 3. │ └─base::withCallingHandlers(...) 4. ├─gganimate::animate(...) 5. └─gganimate:::animate.gganim(...) 6. └─args$renderer(frames_vars$frame_source, args$fps) 7. └─gganimate:::png_dim(frames[1]) 8. └─cli::cli_abort("Provided file ({file}) does not exist") 9. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(karel) > > test_check("karel") [ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... 5. ├─gganimate::animate(...) 6. └─gganimate:::animate.gganim(...) 7. └─args$renderer(frames_vars$frame_source, args$fps) 8. └─gganimate:::png_dim(frames[1]) 9. └─cli::cli_abort("Provided file ({file}) does not exist") 10. └─rlang::abort(...)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘gifski’ All declared Imports should be used.
kDGLM
- Version: 1.2.7
- GitHub: https://github.com/silvaneojunior/kDGLM
- Source code: https://github.com/cran/kDGLM
- Date/Publication: 2025-03-20 01:00:03 UTC
- Number of recursive dependencies: 132
Run
revdepcheck::cloud_details(, "kDGLM")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘kDGLM-Ex.R’ failed The error most likely occurred in:
Name: forecast.fitted_dlm
Title: Auxiliary function for forecasting
Aliases: forecast.fitted_dlm
** Examples
... Warning:
aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the kDGLM package. Please report the issue at https://github.com/silvaneojunior/kDGLM/issues. Scale for y is already present. Adding another scale for y, which will replace the existing scale. Error in pm[[2]] : subscript out of bounds Calls: forecast ... lapply -> -> ggplotly.ggplot -> gg2list Execution halted ``` -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘example1.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 10.9Mb sub-directories of 1Mb or more: doc 9.9Mb
lares
- Version: 5.2.13
- GitHub: https://github.com/laresbernardo/lares
- Source code: https://github.com/cran/lares
- Date/Publication: 2025-02-19 15:20:02 UTC
- Number of recursive dependencies: 95
Run
revdepcheck::cloud_details(, "lares")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘lares-Ex.R’ failed The error most likely occurred in:
Name: clusterKmeans
Title: Automated K-Means Clustering + PCA/t-SNE
Aliases: clusterKmeans
** Examples
Sys.unsetenv("LARES_FONT") # Temporal ...
If dataset has +5 columns, feel free to reduce dimenstionalities
with reduce_pca() or reduce_tsne() first
Find optimal k
check_k <- clusterKmeans(df, limit = 10)
Removed duplicate obserations: 1 Error: object properties are invalid: - @family must be or , not Execution halted ```
latentcor
- Version: 2.0.1
- GitHub: NA
- Source code: https://github.com/cran/latentcor
- Date/Publication: 2022-09-05 20:50:02 UTC
- Number of recursive dependencies: 141
Run
revdepcheck::cloud_details(, "latentcor")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘latentcor-Ex.R’ failed The error most likely occurred in:
Name: latentcor
Title: Estimate latent correlation for mixed types.
Aliases: latentcor
** Examples
Example 1 - truncated data type, same type for all variables
... R_approx = latentcor(X = X, types = "tru", method = "approx")$R proc.time() - start_time user system elapsed 0.025 0.000 0.024
Heatmap for latent correlation matrix.
Heatmap_R_approx = latentcor(X = X, types = "tru", method = "approx", + showplot = TRUE)$plotR Error in pm[[2]] : subscript out of bounds Calls: latentcor ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) evaluation.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) evaluation.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly ... checkRd: (-1) gen_data.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gen_data.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get_types.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) interpolation.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) interpolation.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) latentcor.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
latrend
- Version: 1.6.1
- GitHub: https://github.com/philips-software/latrend
- Source code: https://github.com/cran/latrend
- Date/Publication: 2024-05-15 11:50:02 UTC
- Number of recursive dependencies: 237
Run
revdepcheck::cloud_details(, "latrend")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘latrend-Ex.R’ failed The error most likely occurred in:
Name: qqPlot
Title: Quantile-quantile plot
Aliases: qqPlot
** Examples
data(latrendData) ... 26. │ └─ggplot2 (local) FUN(X[[i]], ...) 27. │ └─self$draw_group(group, panel_params, coord, ...) 28. │ └─ggplot2 (local) draw_group(...) 29. │ └─ggplot2 (local) draw_group(..., self = self) 30. └─base::.handleSimpleError(...) 31. └─rlang (local) h(simpleError(msg, call)) 32. └─handlers[1L] 33. └─cli::cli_abort(...) 34. └─rlang::abort(...) Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘demo.Rmd’ using rmarkdown
lcars
- Version: 0.4.0
- GitHub: https://github.com/leonawicz/lcars
- Source code: https://github.com/cran/lcars
- Date/Publication: 2024-09-11 22:52:42 UTC
- Number of recursive dependencies: 84
Run
revdepcheck::cloud_details(, "lcars")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘lcars-Ex.R’ failed The error most likely occurred in:
Name: lcars_border
Title: LCARS border plot
Aliases: lcars_border
** Examples
lcars_border() ...
len_frac <- c(0.3, 0.5, 0.2, 0.4, 0.3, 0.2, 0.1, 0.3) n_seg <- c(1, 2, 0, 8)
library(ggplot2) g <- ggplot(iris, aes(Sepal.Length, Sepal.Width, color = Species)) + + geom_point() + facet_wrap(~Species, 2) + theme_lcars_light() Error: object properties are invalid: - @family must be or , not Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘lcars.Rmd’ using rmarkdown
Quitting from lcars.Rmd:20-54 [ex-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! object properties are invalid: - @family must be or , not
... Error: processing vignette 'lcars.Rmd' failed with diagnostics: object properties are invalid: - @family must be or , not --- failed re-building ‘lcars.Rmd’
SUMMARY: processing the following file failed: ‘lcars.Rmd’
Error: Vignette re-building failed. Execution halted ```
legendry
- Version: 0.2.2
- GitHub: https://github.com/teunbrand/legendry
- Source code: https://github.com/cran/legendry
- Date/Publication: 2025-05-30 09:20:09 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "legendry")for more infoNewly broken
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checking whether the package can be loaded with stated dependencies ... WARNING ``` Loading required package: ggplot2 Error: package or namespace load failed for ‘legendry’: .onLoad failed in loadNamespace() for 'legendry', details: call: getFromNamespace("class_mapping", "ggplot2") error: could not find function "getFromNamespace" Execution halted
It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. ```
-
checking whether the package can be unloaded cleanly ... WARNING
Error: package or namespace load failed for ‘legendry’: .onLoad failed in loadNamespace() for 'legendry', details: call: getFromNamespace("class_mapping", "ggplot2") error: could not find function "getFromNamespace" Execution halted -
checking whether the namespace can be loaded with stated dependencies ... WARNING ``` Error: .onLoad failed in loadNamespace() for 'legendry', details: call: getFromNamespace("class_mapping", "ggplot2") error: could not find function "getFromNamespace" Execution halted
A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file. ```
-
checking dependencies in R code ... NOTE
Error: .onLoad failed in loadNamespace() for 'legendry', details: call: getFromNamespace("class_mapping", "ggplot2") error: could not find function "getFromNamespace" Call sequence: 3: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s", hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], conditionMessage(res)), call. = FALSE, domain = NA) 2: runHook(".onLoad", env, package.lib, package) 1: loadNamespace(package, lib.loc) Execution halted -
checking R code for possible problems ... NOTE
Error: .onLoad failed in loadNamespace() for 'legendry', details: call: getFromNamespace("class_mapping", "ggplot2") error: could not find function "getFromNamespace" Execution halted
lemon
- Version: 0.5.0
- GitHub: https://github.com/stefanedwards/lemon
- Source code: https://github.com/cran/lemon
- Date/Publication: 2024-11-10 18:20:02 UTC
- Number of recursive dependencies: 72
Run
revdepcheck::cloud_details(, "lemon")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘lemon-Ex.R’ failed The error most likely occurred in:
Name: brackets_horizontal
Title: Axis brackets instead of axis ticks and lines
Aliases: brackets_horizontal brackets_horisontal brackets_vertical
** Examples
library(ggplot2) ... + geom_point(position=position_jitter(width=0.3)) + + theme_bw() + + theme(panel.border = element_blank(), axis.line = element_line()) p
p <- p + coord_flex_cart(bottom=brackets_horizontal(length=unit(0.08, 'npc'))) p Error in as.unit(e2) : object is not coercible to a unit Calls: ... render_axis_h -> bottom -> bottom -> unit.c -> Ops.unit -> as.unit Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lemon) > > > if (TRUE) {
- test_check("lemon")
- } #else { ...
- └─gtable::gtable_add_row_space(panel_table, theme$panel.spacing.y %||% theme$panel.spacing)
- └─cli::cli_abort("{.arg height} must be of length 1 or nrow - 1")
- └─rlang::abort(...)
[ FAIL 2 | WARN 14 | SKIP 3 | PASS 138 ] Deleting unused snapshots: • facet/facet-rep-wrap-spacing.svg • facet_aux/facet-rep-wrap.svg Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘capped-axes.Rmd’ using rmarkdown -
checking S3 generic/method consistency ... WARNING ``` ggplot_build: function(plot, ...) ggplot_build.lemon_plot: function(plot)
ggplot_add: function(object, plot, ...) ggplot_add.axis_annotation: function(object, plot, object_name)
ggplot_gtable: function(plot) ggplot_gtable.built_lemon: function(data) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
lfproQC
- Version: 1.4.0
- GitHub: https://github.com/kabilansbio/lfproQC
- Source code: https://github.com/cran/lfproQC
- Date/Publication: 2024-10-10 13:10:02 UTC
- Number of recursive dependencies: 142
Run
revdepcheck::cloud_details(, "lfproQC")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘lfproQC-Ex.R’ failed The error most likely occurred in:
Name: Boxplot_data
Title: Creating Boxplot for a dataset
Aliases: Boxplot_data
** Examples
Boxplot_data(yeast_data) Using Majority protein IDs as id variables Warning: Removed 269 rows containing non-finite outside the scale range (
stat_boxplot()). Error in pm[[2]] : subscript out of bounds Calls: Boxplot_data -> -> ggplotly.ggplot -> gg2list Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘user_guide.Rmd’ using rmarkdown
Quitting from user_guide.Rmd:54-56 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of boundsBacktrace: ...
Error: processing vignette 'user_guide.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘user_guide.Rmd’
SUMMARY: processing the following file failed: ‘user_guide.Rmd’
Error: Vignette re-building failed. Execution halted ```
lgpr
- Version: 1.2.4
- GitHub: https://github.com/jtimonen/lgpr
- Source code: https://github.com/cran/lgpr
- Date/Publication: 2023-09-24 06:50:02 UTC
- Number of recursive dependencies: 100
Run
revdepcheck::cloud_details(, "lgpr")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # Short tests > # - focus on testing that everything runs > # - should take less than minute > library(testthat) > library(lgpr) Attached lgpr 1.2.4, using rstan 2.32.7. Type ?lgpr to get started. > ... ── Failure ('test_misc-invgamma.R:34:3'): plotting the inverse gamma distribution works ──c1not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test_misc-invgamma.R:35:3'): plotting the inverse gamma distribution works ──c2` not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2[ FAIL 2 | WARN 2 | SKIP 0 | PASS 446 ] Error: Test failures Execution halted ```
In both
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checking installed package size ... NOTE
installed size is 153.2Mb sub-directories of 1Mb or more: R 1.5Mb libs 151.3Mb -
checking Rd files ... NOTE
checkRd: (-1) prior_to_num.Rd:13: Lost braces; missing escapes or markup? 13 | {'uniform', 'normal', 'student-t', 'gamma', 'inv-gamma', 'log-normal'} | ^ -
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
lionfish
- Version: 1.0.27
- GitHub: NA
- Source code: https://github.com/cran/lionfish
- Date/Publication: 2025-03-13 20:50:02 UTC
- Number of recursive dependencies: 125
Run
revdepcheck::cloud_details(, "lionfish")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Bioprocess-Optimization.Rmd’ using knitr --- finished re-building ‘Bioprocess-Optimization.Rmd’
--- re-building ‘General-interactivity.Rmd’ using knitr --- finished re-building ‘General-interactivity.Rmd’
--- re-building ‘Market-segmentation.Rmd’ using knitr ```
listdown
- Version: 0.5.7
- GitHub: https://github.com/kaneplusplus/listdown
- Source code: https://github.com/cran/listdown
- Date/Publication: 2023-04-03 00:30:02 UTC
- Number of recursive dependencies: 70
Run
revdepcheck::cloud_details(, "listdown")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘listdown-Ex.R’ failed The error most likely occurred in:
Name: as_ld_yml
Title: Turn a Computational Component List into YAML with Class
Information
Aliases: as_ld_yml
** Examples
... + as_ld_yml(cc_list) + } Loading required package: ggplot2 Error in parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)), : :2:1: unexpected symbol 1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":")) 2: x ^ Calls: as_ld_yml -> depth_first_copy -> eval -> parse Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.r’ Running the tests in ‘tests/testthat.r’ failed. Complete output: > library(testthat) > library(listdown) > > test_check("listdown") [ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════ ... 5. └─listdown (local) depth_first_copy() 6. ├─base::eval(...) 7. └─base::parse(...) ── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ──────────────────────── ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds"). 4 string mismatches
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ] Error: Test failures Execution halted ```
In both
-
checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘workflowr’ -
checking Rd files ... NOTE
checkRd: (-1) ld_build_html_site.Rd:41: Lost braces 41 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}} | ^ checkRd: (-1) ld_create_doc.Rd:29: Lost braces 29 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}} | ^
LMD
- Version: 1.0.0
- GitHub: https://github.com/shubhra-opensource/LMD
- Source code: https://github.com/cran/LMD
- Date/Publication: 2022-09-20 09:56:07 UTC
- Number of recursive dependencies: 90
Run
revdepcheck::cloud_details(, "LMD")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘LMD-Ex.R’ failed The error most likely occurred in:
Name: plot_lmd
Title: LMD Plot
Aliases: plot_lmd
Keywords: LMD PF Residue
** Examples
... y = (2 / 3 ) sin(x * 30) + (2 / 3) * sin(x * 17.5) + (4 / 5) cos(x * 2) plot_lmd(lmd(y)) Warning: Using
sizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ℹ The deprecated feature was likely used in the LMD package. Please report the issue at https://github.com/shubhra-opensource/LMD/issues. Error: object is invalid: - every label must be named. Execution halted ``` -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘Getting_Started_with_LMD.Rmd’ using rmarkdown
lnmixsurv
- Version: 3.1.6
- GitHub: NA
- Source code: https://github.com/cran/lnmixsurv
- Date/Publication: 2024-09-03 15:20:08 UTC
- Number of recursive dependencies: 195
Run
revdepcheck::cloud_details(, "lnmixsurv")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... <subscriptOutOfBoundsError/error/condition> Error inpm[[2]]`: subscript out of bounds Backtrace: ▆- └─testthat::expect_snapshot(plot(mod1)) at test-survival_ln_mixture_em-methods.R:25:3
- └─rlang::cnd_signal(state$error)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 50 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘compare.Rmd’ using rmarkdown
In both
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checking installed package size ... NOTE
installed size is 10.2Mb sub-directories of 1Mb or more: doc 4.0Mb libs 5.8Mb -
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘purrr’ ‘readr’ All declared Imports should be used. -
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘rstanarm’ -
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
longevity
- Version: 1.2
- GitHub: https://github.com/lbelzile/longevity
- Source code: https://github.com/cran/longevity
- Date/Publication: 2025-05-12 02:10:02 UTC
- Number of recursive dependencies: 52
Run
revdepcheck::cloud_details(, "longevity")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘longevity-Ex.R’ failed The error most likely occurred in:
Name: autoplot.elife_par
Title: Goodness-of-fit plots for parametric models
Aliases: autoplot.elife_par plot.elife_par
** Examples
set.seed(1234) ... + thresh = 0, + event = ifelse(samp$rcens, 0L, 1L), + type = "right", + family = "exp", + export = TRUE) plot(fitted, plot.type = "ggplot") Error in get("print.ggplot", envir = loadNamespace("ggplot2")) : object 'print.ggplot' not found Calls: plot -> plot.elife_par -> lapply -> match.fun -> get Execution halted ```
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("longevity")
- }
test-S3methods.R.............. 0 tests test-S3methods.R.............. 0 tests ... test-S3methods.R.............. 0 tests test-S3methods.R.............. 0 tests test-S3methods.R.............. 0 tests test-S3methods.R.............. 0 tests test-S3methods.R.............. 0 tests test-S3methods.R.............. 0 tests test-S3methods.R.............. 0 tests Error in get("print.ggplot", envir = loadNamespace("ggplot2")) : object 'print.ggplot' not found Calls: ... plot -> plot.elife_par -> lapply -> match.fun -> get Execution halted ```
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installed size is 10.0Mb sub-directories of 1Mb or more: data 7.0Mb libs 2.3Mb
LSX
- Version: 1.4.4
- GitHub: https://github.com/koheiw/LSX
- Source code: https://github.com/cran/LSX
- Date/Publication: 2025-05-23 09:02:06 UTC
- Number of recursive dependencies: 90
Run
revdepcheck::cloud_details(, "LSX")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > require(testthat) Loading required package: testthat > require(quanteda) Loading required package: quanteda Package version: 4.3.0 Unicode version: 15.1 ... ── Failure ('test-textplot.R:84:5'): textplot_components() works ─────────────── class(textplot_components(lss_svd, 3, scale = "relative")) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test-textplot.R:109:5'): textplot_terms works even when frequency has zeros (#85) ── class(textplot_terms(lss)) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 24 | WARN 0 | SKIP 10 | PASS 221 ] Error: Test failures Execution halted ```
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- checking data for non-ASCII characters ... NOTE
Note: found 2096 marked UTF-8 strings
ltertools
- Version: 2.0.0
- GitHub: https://github.com/lter/ltertools
- Source code: https://github.com/cran/ltertools
- Date/Publication: 2025-03-26 18:30:02 UTC
- Number of recursive dependencies: 90
Run
revdepcheck::cloud_details(, "ltertools")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-site_timeline.R:15:3'): Outputs are correct ────────────────── class(time_gg) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 1 | WARN 0 | SKIP 0 | PASS 36 ] Error: Test failures Execution halted ```
manydata
- Version: 1.0.2
- GitHub: https://github.com/globalgov/manydata
- Source code: https://github.com/cran/manydata
- Date/Publication: 2025-06-03 08:40:02 UTC
- Number of recursive dependencies: 115
Run
revdepcheck::cloud_details(, "manydata")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(manydata) Loading required package: cli Loading required package: dplyr
Attaching package: 'dplyr'
... ── Failure ('test_compare.R:6:3'): plot for compare_categories returns the correct output format ──
dbhas length 1, not length 11. ── Failure ('test_compare.R:48:3'): compare_overlap() and return the correct output format ──plhas type 'object', not 'list'. ── Failure ('test_compare.R:60:3'): compare_missing() and plot_missing() returns the correct output format ──plhas type 'object', not 'list'.[ FAIL 5 | WARN 1 | SKIP 3 | PASS 122 ] Error: Test failures Execution halted ```
manymodelr
- Version: 0.3.9
- GitHub: https://github.com/Nelson-Gon/manymodelr
- Source code: https://github.com/cran/manymodelr
- Date/Publication: 2025-03-20 07:20:02 UTC
- Number of recursive dependencies: 126
Run
revdepcheck::cloud_details(, "manymodelr")for more infoNewly broken
- checking whether package ‘manymodelr’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘manymodelr’ See ‘/tmp/workdir/manymodelr/new/manymodelr.Rcheck/00install.out’ for details.
manynet
- Version: 1.3.2
- GitHub: https://github.com/stocnet/manynet
- Source code: https://github.com/cran/manynet
- Date/Publication: 2024-11-05 20:50:02 UTC
- Number of recursive dependencies: 142
Run
revdepcheck::cloud_details(, "manynet")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘manynet-Ex.R’ failed The error most likely occurred in:
Name: make_play
Title: Making diffusion models on networks
Aliases: make_play play_diffusion play_diffusions
** Examples
smeg <- generate_smallworld(15, 0.025) ... ! Only know how to add and/or objects Backtrace: ▆ 1. ├─base::plot(play_diffusion(smeg, recovery = 0.4)) 2. └─manynet:::plot.diff_model(play_diffusion(smeg, recovery = 0.4)) 3. └─manynet:::
+.ggplot(...) 4. └─patchwork::wrap_plots(e1, e2, ...) 5. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects") 6. └─rlang::abort(...) Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(manynet) > > test_check("manynet") Starting 2 test processes [ FAIL 3 | WARN 0 | SKIP 21 | PASS 548 ]
... 1. ├─base::plot(node_degree(ison_adolescents)) at test-measure_centrality.R:87:3 2. └─manynet:::plot.node_measure(node_degree(ison_adolescents)) 3. └─manynet:::
+.ggplot(...) 4. └─patchwork::wrap_plots(e1, e2, ...) 5. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects") 6. └─rlang::abort(...)[ FAIL 3 | WARN 0 | SKIP 21 | PASS 548 ] Error: Test failures Execution halted ```
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checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘Rgraphviz’ -
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checking data for non-ASCII characters ... NOTE
Note: found 7 marked UTF-8 strings
marquee
- Version: 1.0.0
- GitHub: https://github.com/r-lib/marquee
- Source code: https://github.com/cran/marquee
- Date/Publication: 2025-01-20 16:01:56 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "marquee")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘marquee-Ex.R’ failed The error most likely occurred in:
Name: element_marquee
Title: ggplot2 theme element supporting marquee syntax
Aliases: element_marquee
** Examples
Don't show:
... + What more could you possibly want?") + + theme(title = element_marquee()) + ## Don't show: + }) # examplesIf library(ggplot2) p <- ggplot(mtcars) + geom_point(aes(mpg, disp)) + labs(title = "A {.red marquee} title\n Look at this bullet list\n\n great, huh?") + + theme_gray(base_size = 6) + theme(title = element_marquee()) plot(p) Error:
objectmust be an , not a S3 Execution halted ```
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installed size is 5.9Mb sub-directories of 1Mb or more: doc 2.4Mb libs 2.6Mb
MaxWiK
- Version: 1.0.5
- GitHub: NA
- Source code: https://github.com/cran/MaxWiK
- Date/Publication: 2024-11-25 11:40:13 UTC
- Number of recursive dependencies: 54
Run
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘User-Guide.Rmd’ using rmarkdown # Input data
Data format
The data format of input should be numerical only in the form of data frame, for example:
``` r ...
Error: processing vignette 'User-Guide.Rmd' failed with diagnostics:
objectmust be an , not a S3 --- failed re-building ‘User-Guide.Rmd’SUMMARY: processing the following file failed: ‘User-Guide.Rmd’
Error: Vignette re-building failed. Execution halted ```
MBMethPred
- Version: 0.1.4.2
- GitHub: https://github.com/sharifrahmanie/MBMethPred
- Source code: https://github.com/cran/MBMethPred
- Date/Publication: 2023-09-18 14:10:09 UTC
- Number of recursive dependencies: 138
Run
revdepcheck::cloud_details(, "MBMethPred")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(MBMethPred) > > test_check("MBMethPred") y_pred y_true Group3 SHH Group4 Group3 1 0 0 ...
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-BoxPlot.R:8:3'): MakeBoxPlot returns correct type ──────────── BoxPlot(File = data) has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ] Error: Test failures Execution halted ```
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installed size is 10.2Mb sub-directories of 1Mb or more: R 3.0Mb data 7.0Mb
mcp
- Version: 0.3.4
- GitHub: https://github.com/lindeloev/mcp
- Source code: https://github.com/cran/mcp
- Date/Publication: 2024-03-17 20:10:02 UTC
- Number of recursive dependencies: 96
Run
revdepcheck::cloud_details(, "mcp")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘mcp-Ex.R’ failed The error most likely occurred in:
Name: plot_pars
Title: Plot individual parameters
Aliases: plot_pars
** Examples
Typical usage. demo_fit is an mcpfit object.
plot_pars(demo_fit) Warning: Using
sizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ℹ The deprecated feature was likely used in the bayesplot package. Please report the issue at https://github.com/stan-dev/bayesplot/issues/. Error: Can't find method for generic&(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mcp) > > test_check("mcp") [ FAIL 24 | WARN 2 | SKIP 6 | PASS 749 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════ ... Backtrace: ▆ 1. └─mcp:::test_runs(model, ...) at tests/testthat/helper-runs.R:338:7 2. └─mcp:::test_plot_pars(fit) at tests/testthat/helper-runs.R:112:7 3. └─mcp::plot_pars(fit, type = "dens_overlay") at tests/testthat/helper-runs.R:171:3 4. └─S7:::Ops.S7_object(...)
[ FAIL 24 | WARN 2 | SKIP 6 | PASS 749 ] Error: Test failures Execution halted ```
mcStats
- Version: 0.1.2
- GitHub: NA
- Source code: https://github.com/cran/mcStats
- Date/Publication: 2020-02-26 06:50:02 UTC
- Number of recursive dependencies: 52
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revdepcheck::cloud_details(, "mcStats")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mcStats) > > test_check("mcStats") [ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... * Removed 420 rows containing missing values or values outside the scale range (
geom_area()). * Removed 442 rows containing missing values or values outside the scale range (geom_area()). * Removed 184 rows containing missing values or values outside the scale range (geom_area()).[ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ] Error: Test failures Execution halted ```
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- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
meme
- Version: 0.2.3
- GitHub: https://github.com/GuangchuangYu/meme
- Source code: https://github.com/cran/meme
- Date/Publication: 2021-04-23 10:00:02 UTC
- Number of recursive dependencies: 63
Run
revdepcheck::cloud_details(, "meme")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘meme.Rmd’ using rmarkdown
MendelianRandomization
- Version: 0.10.0
- GitHub: NA
- Source code: https://github.com/cran/MendelianRandomization
- Date/Publication: 2024-04-12 10:10:02 UTC
- Number of recursive dependencies: 85
Run
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checking examples ... ERROR ``` Running examples in ‘MendelianRandomization-Ex.R’ failed The error most likely occurred in:
Name: mr_plot
Title: Draw a scatter plot of the genetic associations and/or causal
estimates
Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method
mr_plot,MRMVInput-method
** Examples
mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse), + line="egger", orientate = TRUE) Error in pm[[2]] : subscript out of bounds Calls: mr_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
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installed size is 5.9Mb sub-directories of 1Mb or more: R 1.0Mb libs 4.2Mb
metagam
- Version: 0.4.0
- GitHub: https://github.com/Lifebrain/metagam
- Source code: https://github.com/cran/metagam
- Date/Publication: 2023-05-05 18:20:06 UTC
- Number of recursive dependencies: 116
Run
revdepcheck::cloud_details(, "metagam")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘dominance.Rmd’ using rmarkdown
MetAlyzer
- Version: 1.1.0
- GitHub: https://github.com/nilsmechtel/MetAlyzer
- Source code: https://github.com/cran/MetAlyzer
- Date/Publication: 2024-12-06 14:00:02 UTC
- Number of recursive dependencies: 94
Run
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checking examples ... ERROR ``` Running examples in ‘MetAlyzer-Ex.R’ failed The error most likely occurred in:
Name: plotly_scatter
Title: Plotly Log2FC Scatter Plot
Aliases: plotly_scatter
** Examples
... Warning: Partial NA coefficients for 2 probe(s)
p_scatter <- plotly_scatter(metalyzer_se) Warning in geom_rect(data = rects_df, inherit.aes = FALSE, aes(xmin = .data$Start, : Ignoring unknown aesthetics: text Warning in geom_point(size = 0.5, aes(text = paste0(.data$Metabolite, "\nClass: ", : Ignoring unknown aesthetics: text Error in pm[[2]] : subscript out of bounds Calls: plotly_scatter -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
MetaNet
- Version: 0.2.5
- GitHub: https://github.com/Asa12138/MetaNet
- Source code: https://github.com/cran/MetaNet
- Date/Publication: 2025-04-10 06:30:02 UTC
- Number of recursive dependencies: 173
Run
revdepcheck::cloud_details(, "MetaNet")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘MetaNet-Ex.R’ failed The error most likely occurred in:
Name: as.ggig
Title: Transfer an igraph object to a ggig
Aliases: as.ggig
** Examples
as.ggig(co_net, coors = c_net_layout(co_net)) -> ggig ... 5. └─ggplot2::build_ggplot(plot) 6. ├─S7::S7_dispatch() 7. └─ggplot2 (local)
method(build_ggplot, ggplot2::ggplot)(...) 8. └─npscales$set_palettes(plot@theme) 9. └─ggplot2 (local) set_palettes(..., self = self) 10. ├─scales::as_continuous_pal(elem) 11. └─scales:::as_continuous_pal.default(elem) 12. └─cli::cli_abort("Cannot convert {.arg x} to a continuous palette.") 13. └─rlang::abort(...) Execution halted ```
metaquant
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/metaquant
- Date/Publication: 2025-02-11 17:00:02 UTC
- Number of recursive dependencies: 75
Run
revdepcheck::cloud_details(, "metaquant")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘metaquant-Ex.R’ failed The error most likely occurred in:
Name: plotdist
Title: Visualising Densities using Quantiles
Aliases: plotdist
** Examples
Example dataset of 3-point summaries (min, med, max) for 2 groups
... + display.legend = TRUE, + pooled.dist = TRUE + ) Warning: Using
sizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ℹ The deprecated feature was likely used in the metaquant package. Please report the issue to the authors. Error in pm[[2]] : subscript out of bounds Calls: plotdist -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
metR
- Version: 0.18.1
- GitHub: https://github.com/eliocamp/metR
- Source code: https://github.com/cran/metR
- Date/Publication: 2025-05-13 06:30:01 UTC
- Number of recursive dependencies: 119
Run
revdepcheck::cloud_details(, "metR")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘metR-Ex.R’ failed The error most likely occurred in:
Name: geom_contour_fill
Title: Filled 2d contours of a 3d surface
Aliases: geom_contour_fill stat_contour_fill StatContourFill
Keywords: datasets
** Examples
... ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill() + geom_contour(color = "black", + size = 0.1) Warning: Using
sizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill(aes(fill = after_stat(level))) ggplot(surface, aes(Var1, Var2, z = value)) + geom_contour_fill(aes(fill = after_stat(level_d))) Error in train(..., self = self) : unused argument (call = scale_fill_discretised()) Calls: ... -> train_df -> -> train -> Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(metR) > # library(vdiffr) > > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) > if (on_cran) data.table::setDTthreads(2) > ...
- ├─ggplot2::guide_gengrob(params, theme)
- └─metR:::guide_gengrob.colorstrip(params, theme)
- └─grid::convertWidth(...)
- └─grid::convertUnit(...)
- ├─grid:::upgradeUnit(x)
- └─grid:::upgradeUnit.default(x)
[ FAIL 1 | WARN 2 | SKIP 19 | PASS 184 ] Error: Test failures Execution halted ```
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Visualization-tools.Rmd’ using knitr
Quitting from Visualization-tools.Rmd:181-184 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
train(): ! unused argument (call = scale_fill_discretised())Backtrace: ... --- failed re-building ‘Visualization-tools.Rmd’
--- re-building ‘Working-with-data.Rmd’ using knitr --- finished re-building ‘Working-with-data.Rmd’
SUMMARY: processing the following file failed: ‘Visualization-tools.Rmd’
Error: Vignette re-building failed. Execution halted ```
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installed size is 6.6Mb sub-directories of 1Mb or more: R 1.5Mb data 2.0Mb doc 1.8Mb
mgcViz
- Version: 0.2.0
- GitHub: https://github.com/mfasiolo/mgcViz
- Source code: https://github.com/cran/mgcViz
- Date/Publication: 2025-04-11 11:30:07 UTC
- Number of recursive dependencies: 110
Run
revdepcheck::cloud_details(, "mgcViz")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘mgcviz.rmd’ using rmarkdown
MIC
- Version: 1.1.0
- GitHub: https://github.com/agerada/MIC
- Source code: https://github.com/cran/MIC
- Date/Publication: 2025-06-05 04:20:06 UTC
- Number of recursive dependencies: 144
Run
revdepcheck::cloud_details(, "MIC")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘MIC-Ex.R’ failed The error most likely occurred in:
Name: plot.mic_validation
Title: Plot MIC validation results
Aliases: plot.mic_validation
** Examples
gold_standard <- c("<0.25", "8", "64", ">64") ... 6. ├─S7::S7_dispatch() 7. └─ggplot2 (local)
method(gtable_ggplot, ggplot2::ggplot_built)(data =<ggpl2::_>) 8. └─layout$render(geom_grobs, data, theme, plot@labels) 9. └─ggplot2 (local) render(..., self = self) 10. └─self$facet$draw_panels(...) 11. └─lemon (local) draw_panels(...) 12. └─gtable::gtable_add_col_space(panel_table, theme$panel.spacing.x %||% theme$panel.spacing) 13. └─cli::cli_abort("{.arg width} must be of length 1 or ncol - 1") 14. └─rlang::abort(...) Execution halted ```
migraph
- Version: 1.4.5
- GitHub: https://github.com/stocnet/migraph
- Source code: https://github.com/cran/migraph
- Date/Publication: 2024-12-02 10:00:10 UTC
- Number of recursive dependencies: 95
Run
revdepcheck::cloud_details(, "migraph")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘migraph-Ex.R’ failed The error most likely occurred in:
Name: regression
Title: Linear and logistic regression for network data
Aliases: regression net_regression
** Examples
networkers <- ison_networkers %>% to_subgraph(Discipline == "Sociology") ... 4 sim Citations 39.4 3.13 0.1 glance(model1)
A tibble: 1 × 8
r.squared adj.r.squared sigma statistic p.value df df.residual nobs 1 0.0674 0.0570 48.9 6.46 0.000309 3 268 272
plot(model1) Error in loadNamespace(x) : there is no package called ‘patchwork’ Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(manynet) > library(migraph) > > test_check("migraph") Starting 2 test processes [ FAIL 2 | WARN 1 | SKIP 0 | PASS 34 ] ...
- ├─migraph:::plot.network_test(cugtest)
- │ └─manynet:::
+.ggplot(...) - └─base::loadNamespace(x)
- └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
- └─base (local) withOneRestart(expr, restarts[[1L]])
- └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 34 ] Error: Test failures Execution halted ```
mikropml
- Version: 1.6.1
- GitHub: https://github.com/SchlossLab/mikropml
- Source code: https://github.com/cran/mikropml
- Date/Publication: 2023-08-21 15:10:05 UTC
- Number of recursive dependencies: 127
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mikropml) > test_check("mikropml") Fraction of data in the training set: 0.778 Groups in the training set: A C D Groups in the testing set: B Fraction of data in the training set: 0.778 ...names(expected)is absent ── Failure ('test-plot.R:140:3'): plot_mean_prc uses geom ribbon, line, and hline ── ... %>% unlist() (actual) not equal to c(...) (expected`).names(actual)is a character vector ('geom_ribbon1', 'geom_ribbon2', 'geom_ribbon3', 'geom_ribbon4', 'geom_line1', ...)names(expected)is absent[ FAIL 2 | WARN 19 | SKIP 12 | PASS 314 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) create_grouped_data_partition.Rd:60: Lost braces; missing escapes or markup? 60 | Zena Lapp, {zenalapp@umich.edu} | ^ checkRd: (-1) create_grouped_data_partition.Rd:62: Lost braces; missing escapes or markup? 62 | Kelly Sovacool, {sovacool@umich.edu} | ^ checkRd: (-1) create_grouped_k_multifolds.Rd:30: Lost braces; missing escapes or markup? 30 | Zena Lapp, {zenalapp@umich.edu} | ^ checkRd: (-1) get_partition_indices.Rd:58: Lost braces; missing escapes or markup? 58 | Kelly Sovacool, {sovacool@umich.edu} | ^ checkRd: (-1) set_hparams_glmnet.Rd:16: Lost braces; missing escapes or markup? 16 | Zena Lapp, {zenalapp@umich.edu} | ^
MiMIR
- Version: 1.5
- GitHub: NA
- Source code: https://github.com/cran/MiMIR
- Date/Publication: 2024-02-01 08:50:02 UTC
- Number of recursive dependencies: 192
Run
revdepcheck::cloud_details(, "MiMIR")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘MiMIR-Ex.R’ failed The error most likely occurred in:
Name: LOBOV_accuracies
Title: LOBOV_accuracies
Aliases: LOBOV_accuracies
** Examples
require(pROC) ... 56 metabolites x 500 samples | Pruning samples on5SD: 56 metabolites x 500 samples | Performing scaling ... DONE! | Imputation ... DONE! p_avail<-colnames(b_p)[c(1:5)] LOBOV_accuracies(sur$surrogates, b_p, p_avail, MiMIR::acc_LOBOV) Error in pm[[2]] : subscript out of bounds Calls: LOBOV_accuracies -> -> ggplotly.ggplot -> gg2list Execution halted ```
miRetrieve
- Version: 1.3.4
- GitHub: NA
- Source code: https://github.com/cran/miRetrieve
- Date/Publication: 2021-09-18 17:30:02 UTC
- Number of recursive dependencies: 123
Run
revdepcheck::cloud_details(, "miRetrieve")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(miRetrieve) > > test_check("miRetrieve") [ FAIL 7 | WARN 15 | SKIP 0 | PASS 196 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... y[1]: "list" ── Failure ('test-plotscore.R:44:5'): Tests plotting scores ──────────────────── typeof(plot_own) not equal to "list". 1/1 mismatches x[1]: "object" y[1]: "list"
[ FAIL 7 | WARN 15 | SKIP 0 | PASS 196 ] Error: Test failures Execution halted ```
MiscMetabar
- Version: 0.14.2
- GitHub: https://github.com/adrientaudiere/MiscMetabar
- Source code: https://github.com/cran/MiscMetabar
- Date/Publication: 2025-03-20 15:20:02 UTC
- Number of recursive dependencies: 420
Run
revdepcheck::cloud_details(, "MiscMetabar")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘MiscMetabar-Ex.R’ failed The error most likely occurred in:
Name: upset_pq
Title: Make upset plot for phyloseq object.
Aliases: upset_pq
** Examples
if (requireNamespace("ComplexUpset")) { ... 27. │ └─ggplot2 (local)
method(merge_element, list(ggplot2::element, class_any))(...) 28. │ └─S7::props(old, idx) 29. │ └─S7::check_is_S7(object) 30. │ └─base::stop(msg, call. = FALSE) 31. └─base::.handleSimpleError(...) 32. └─rlang (local) h(simpleError(msg, call)) 33. └─handlers[1L] 34. └─cli::cli_abort(...) 35. └─rlang::abort(...) Execution halted ``` -
checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(MiscMetabar) Loading required package: phyloseq Loading required package: ggplot2 Loading required package: dada2 Loading required package: Rcpp ...
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
graph_test_pq(data_fungi_mini, fact = "Tree_name")produced warnings. ── Failure ('test_figures_beta_div.R:258:5'): upset_pq works with data_fungi dataset ──suppressMessages(upset_pq(data_fungi_mini, "Height"))produced warnings.[ FAIL 2 | WARN 4 | SKIP 74 | PASS 80 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘MiscMetabar.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.2Mb sub-directories of 1Mb or more: data 2.0Mb extdata 1.2Mb
miscset
- Version: 1.1.0
- GitHub: https://github.com/setempler/miscset
- Source code: https://github.com/cran/miscset
- Date/Publication: 2017-02-24 16:46:57
- Number of recursive dependencies: 109
Run
revdepcheck::cloud_details(, "miscset")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘miscset.Rmd’ using rmarkdown
misspi
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/misspi
- Date/Publication: 2023-10-17 09:50:02 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "misspi")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘misspi-Ex.R’ failed The error most likely occurred in:
Name: evaliq
Title: Evaluate the Imputation Quality
Aliases: evaliq
** Examples
A very quick example
...
Default plot
er.eval <- evaliq(x.true[na.idx], x.est[na.idx])
geom_smooth()using formula = 'y ~ x'Interactive plot
er.eval <- evaliq(x.true[na.idx], x.est[na.idx], interactive = TRUE)
geom_smooth()using formula = 'y ~ x' Error in pm[[2]] : subscript out of bounds Calls: evaliq -> print -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
mistral
- Version: 2.2.2
- GitHub: NA
- Source code: https://github.com/cran/mistral
- Date/Publication: 2024-01-17 13:40:02 UTC
- Number of recursive dependencies: 71
Run
revdepcheck::cloud_details(, "mistral")for more infoNewly broken
- checking whether package ‘mistral’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘mistral’ See ‘/tmp/workdir/mistral/new/mistral.Rcheck/00install.out’ for details.
misty
- Version: 0.7.2
- GitHub: NA
- Source code: https://github.com/cran/misty
- Date/Publication: 2025-05-20 16:20:02 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "misty")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘misty-Ex.R’ failed The error most likely occurred in:
Name: na.pattern
Title: Missing Data Pattern
Aliases: na.pattern
** Examples
Example 1: Compute a summary of missing data patterns
... 26. └─ggplot2 (local) extract_key(...) 27. └─Guide$extract_key(scale, aesthetic, ...) 28. └─ggplot2 (local) extract_key(...) 29. └─scale$get_labels(breaks) 30. └─ggplot2 (local) get_labels(..., self = self) 31. └─self$scale$get_labels(breaks) 32. └─ggplot2 (local) get_labels(..., self = self) 33. └─cli::cli_abort(...) 34. └─rlang::abort(...) Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.6Mb sub-directories of 1Mb or more: R 4.0Mb help 1.5Mb
mizer
- Version: 2.5.3
- GitHub: https://github.com/sizespectrum/mizer
- Source code: https://github.com/cran/mizer
- Date/Publication: 2024-10-17 07:10:09 UTC
- Number of recursive dependencies: 107
Run
revdepcheck::cloud_details(, "mizer")for more infoNewly broken
- checking tests ... ERROR
Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview ... • plots/plot-feeding-level.svg • plots/plot-single-growth-curve.svg • plots/plot-spectra.svg • plots/plot-yield-by-gear.svg • plots/plot-yield.svg • plots/plotfishing-mortality.svg • plots/plotfmort-truncated.svg • plots/plotpredation-mortality.svg Error: Test failures Execution halted
In both
- checking installed package size ... NOTE
installed size is 5.5Mb sub-directories of 1Mb or more: help 1.8Mb
MKpower
- Version: 1.0
- GitHub: https://github.com/stamats/MKpower
- Source code: https://github.com/cran/MKpower
- Date/Publication: 2024-09-23 14:30:01 UTC
- Number of recursive dependencies: 122
Run
revdepcheck::cloud_details(, "MKpower")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘MKpower-Ex.R’ failed The error most likely occurred in:
Name: qqunif
Title: qq-Plots for Uniform Distribution
Aliases: qqunif qqunif.default qqunif.sim.power.ttest
qqunif.sim.power.wtest
Keywords: hplot
** Examples
... 26. │ └─ggplot2 (local) FUN(X[[i]], ...) 27. │ └─self$draw_group(group, panel_params, coord, ...) 28. │ └─ggplot2 (local) draw_group(...) 29. │ └─ggplot2 (local) draw_group(..., self = self) 30. └─base::.handleSimpleError(...) 31. └─rlang (local) h(simpleError(msg, call)) 32. └─handlers[1L] 33. └─cli::cli_abort(...) 34. └─rlang::abort(...) Execution halted ```
mlr3spatiotempcv
- Version: 2.3.2
- GitHub: https://github.com/mlr-org/mlr3spatiotempcv
- Source code: https://github.com/cran/mlr3spatiotempcv
- Date/Publication: 2024-11-29 13:10:02 UTC
- Number of recursive dependencies: 165
Run
revdepcheck::cloud_details(, "mlr3spatiotempcv")for more infoNewly broken
- checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
- library("checkmate")
- library("testthat")
- library("mlr3spatiotempcv")
- test_check("mlr3spatiotempcv")
- } Loading required package: mlr3 ... • 2-autoplot/sptcvcstf-2d-time-var-fold-1-rep-2.svg • 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg • 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg • 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg • 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg • 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg • 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg • autoplot_buffer/spcvbuffer-fold-1-2.svg Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.9Mb sub-directories of 1Mb or more: data 3.5Mb
modeldb
- Version: 0.3.0
- GitHub: https://github.com/tidymodels/modeldb
- Source code: https://github.com/cran/modeldb
- Date/Publication: 2023-11-01 14:30:02 UTC
- Number of recursive dependencies: 87
Run
revdepcheck::cloud_details(, "modeldb")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_kmeans_viz.R:5:3'): plot_kmeans() returns a ggplot2 object ─── class(plot_kmeans(mtcars, mpg, wt, group = am)) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 1 | WARN 33 | SKIP 0 | PASS 18 ] Error: Test failures Execution halted ```
modeltime.resample
- Version: 0.2.3
- GitHub: https://github.com/business-science/modeltime.resample
- Source code: https://github.com/cran/modeltime.resample
- Date/Publication: 2023-04-12 15:50:02 UTC
- Number of recursive dependencies: 234
Run
revdepcheck::cloud_details(, "modeltime.resample")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > > # Machine Learning > library(tidymodels) ── Attaching packages ────────────────────────────────────── tidymodels 1.3.0 ── ✔ broom 1.0.8 ✔ recipes 1.3.1 ✔ dials 1.4.0 ✔ rsample 1.3.0 ... ▆
- ├─m750_models_resample %>% ... at test-modeltime_fit_resamples.R:116:5
- └─modeltime.resample::plot_modeltime_resamples(., .interactive = TRUE)
- ├─plotly::ggplotly(g)
- └─plotly:::ggplotly.ggplot(g)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 16 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘crayon’ ‘dials’ ‘glue’ ‘parsnip’ All declared Imports should be used.
Momocs
- Version: 1.4.1
- GitHub: https://github.com/MomX/Momocs
- Source code: https://github.com/cran/Momocs
- Date/Publication: 2023-11-13 11:13:30 UTC
- Number of recursive dependencies: 144
Run
revdepcheck::cloud_details(, "Momocs")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘Momocs-Ex.R’ failed The error most likely occurred in:
Name: plot_CV
Title: Plots a cross-validation table as an heatmap
Aliases: plot_CV plot_CV.default plot_CV.LDA
** Examples
h <- hearts %>% ... h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
you can customize the returned gg with some ggplot2 functions
h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
or build your own using the prepared data_frame:
df <- h %>% plot_CV() %$% data Error in eval(substitute(expr), data, enclos = parent.frame()) : invalid 'envir' argument of type 'object' Calls: %$% -> -> with.default -> eval Execution halted ```
mpactr
- Version: 0.2.1
- GitHub: https://github.com/mums2/mpactr
- Source code: https://github.com/cran/mpactr
- Date/Publication: 2025-03-29 00:30:05 UTC
- Number of recursive dependencies: 142
Run
revdepcheck::cloud_details(, "mpactr")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...expected[2:2]: "ggplot" ── Failure ('test-quality_control.R:44:3'): qc plot returns a generates a plot ── class(plot) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 2 | WARN 0 | SKIP 1 | PASS 165 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘downstream_analyses.Rmd’ using rmarkdown Warning: Duplicated chunk option(s) 'warning' in both chunk header and pipe comments of the chunk 'unnamed-chunk-18'.
In both
- checking installed package size ... NOTE
installed size is 9.0Mb sub-directories of 1Mb or more: doc 4.9Mb extdata 1.9Mb libs 1.6Mb
MRZero
- Version: 0.2.0
- GitHub: NA
- Source code: https://github.com/cran/MRZero
- Date/Publication: 2024-04-14 09:30:03 UTC
- Number of recursive dependencies: 79
Run
revdepcheck::cloud_details(, "MRZero")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘MRZero-Ex.R’ failed The error most likely occurred in:
Name: mr_plot
Title: Draw a scatter plot of the genetic associations and/or causal
estimates
Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method
mr_plot,MRMVInput-method
** Examples
mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse), + line="egger", orientate = TRUE) Error in pm[[2]] : subscript out of bounds Calls: mr_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
mshap
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/mshap
- Date/Publication: 2021-06-17 08:40:02 UTC
- Number of recursive dependencies: 123
Run
revdepcheck::cloud_details(, "mshap")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mshap) > > test_check("mshap") [ FAIL 8 | WARN 2 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ...
p2_allhas type 'object', not 'list'. ── Failure ('test-plots.R:62:3'): Observation Plot Works with all arguments ──── class(p2_all) (actual) not equal to c("gg", "ggplot") (expected).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 8 | WARN 2 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘tidyselect’ All declared Imports should be used.
mtdesign
- Version: 0.1.2
- GitHub: https://github.com/openpharma/mtdesign
- Source code: https://github.com/cran/mtdesign
- Date/Publication: 2024-11-05 14:10:15 UTC
- Number of recursive dependencies: 56
Run
revdepcheck::cloud_details(, "mtdesign")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mtdesign) > > test_check("mtdesign") testthat 2025-06-11 09:02:22 DEBUG test_check: Entry testthat 2025-06-11 09:02:22 DEBUG test_check: Entry testthat 2025-06-11 09:02:22 DEBUG test_check: Exit ...expected[2:2]: "ggplot" ── Failure ('test-powerPlot.R:6:3'): multiplication works ────────────────────── class(powerPlot(simonGrid)) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 2 | WARN 0 | SKIP 0 | PASS 127 ] Error: Test failures Execution halted ```
MultiTraits
- Version: 0.5.0
- GitHub: NA
- Source code: https://github.com/cran/MultiTraits
- Date/Publication: 2025-04-20 18:40:02 UTC
- Number of recursive dependencies: 137
Run
revdepcheck::cloud_details(, "MultiTraits")for more infoNewly broken
- checking whether package ‘MultiTraits’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘MultiTraits’ ... ** package ‘MultiTraits’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error: .onLoad failed in loadNamespace() for 'ggtern', details: call: NULL error: <ggplot2::element_line> object properties are invalid: - @lineend must be <character> or <NULL>, not S3<arrow> Execution halted ERROR: lazy loading failed for package ‘MultiTraits’ * removing ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/MultiTraits’CRAN
* installing *source* package ‘MultiTraits’ ... ** package ‘MultiTraits’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiTraits)mvdalab
- Version: 1.7
- GitHub: NA
- Source code: https://github.com/cran/mvdalab
- Date/Publication: 2022-10-05 23:00:14 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "mvdalab")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘mvdalab-Ex.R’ failed The error most likely occurred in:
Name: plot.plusminus
Title: 2D Graph of the PCA scores associated with a plusminusFit
Aliases: plot.plusminus
** Examples
PLUS-Minus CLASSIFIER WITH validation = 'none', i.e. no CV
... 15. │ └─ggplot2 (local) FUN(X[[i]], ...) 16. │ └─scale$map_df(df = df) 17. │ └─ggplot2 (local) map_df(..., self = self) 18. │ └─base::lapply(aesthetics, function(j) self$map(df[[j]])) 19. │ └─ggplot2 (local) FUN(X[[i]], ...) 20. │ └─self$map(df[[j]]) 21. │ └─ggplot2 (local) map(..., self = self) 22. │ └─vctrs::
vec_slice<-(*tmp*, is.na(x), value = na_value) 23. └─rlang::cnd_signal(x) Execution halted ```
mverse
- Version: 0.2.0
- GitHub: https://github.com/mverseanalysis/mverse
- Source code: https://github.com/cran/mverse
- Date/Publication: 2025-04-24 08:10:02 UTC
- Number of recursive dependencies: 135
Run
revdepcheck::cloud_details(, "mverse")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘mverse_gettingstarted.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 9.0Mb sub-directories of 1Mb or more: data 7.0Mb
mxnorm
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/mxnorm
- Date/Publication: 2023-05-01 17:10:02 UTC
- Number of recursive dependencies: 169
Run
revdepcheck::cloud_details(, "mxnorm")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(mxnorm) > > test_check("mxnorm") boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') ...expected[2:2]: "ggplot" ── Failure ('test-plot_mx_umap.R:16:5'): plotting works ──────────────────────── class(plot_mx_umap(mx_data)) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 2 | WARN 2 | SKIP 6 | PASS 85 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘e1071’ ‘glue’ All declared Imports should be used.
neatmaps
- Version: 2.1.0
- GitHub: https://github.com/PhilBoileau/neatmaps
- Source code: https://github.com/cran/neatmaps
- Date/Publication: 2019-05-12 19:10:03 UTC
- Number of recursive dependencies: 97
Run
revdepcheck::cloud_details(, "neatmaps")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘neatmaps-Ex.R’ failed The error most likely occurred in:
Name: consClustResTable
Title: Consensus Cluster Results in a Table
Aliases: consClustResTable
** Examples
create the data frame using the network, node and edge attributes
...
run the neatmap code on df
neat_res <- neatmap(df, scale_df = "ecdf", max_k = 3, reps = 100, + xlab = "vars", ylab = "nets", xlab_cex = 1, ylab_cex = 1) Warning: Using
sizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ℹ The deprecated feature was likely used in the dendextend package. Please report the issue at https://github.com/talgalili/dendextend/issues. Error in pm[[2]] : subscript out of bounds Calls: neatmap ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 6.3Mb
NHSRplotthedots
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/NHSRplotthedots
- Date/Publication: 2021-11-03 20:20:10 UTC
- Number of recursive dependencies: 82
Run
revdepcheck::cloud_details(, "NHSRplotthedots")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(NHSRplotthedots) > > test_check("NHSRplotthedots") [ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ]
...
attr(expected, 'S7_class')is absent ── Failure ('test-ptd_create_ggplot.R:79:3'): it returns a ggplot object ─────── p$labels (actual) not equal to list(...) (expected).actualis an S7 object of classexpectedis a list[ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from: ‘NHSRdatasets’ ‘grid’ ‘utils’ All declared Imports should be used.
nichetools
- Version: 0.3.2
- GitHub: https://github.com/benjaminhlina/nichetools
- Source code: https://github.com/cran/nichetools
- Date/Publication: 2024-09-30 21:20:02 UTC
- Number of recursive dependencies: 117
Run
revdepcheck::cloud_details(, "nichetools")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘using-nichetools-with-the-package-SIBER.Rmd’ using rmarkdown
Quitting from using-nichetools-with-the-package-SIBER.Rmd:96-118 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: !
objectmust be an , not a S3Backtrace: ... 61. └─ggplot2 (local) f(init, x[[i]]) 62. └─S7::props(e2) 63. └─S7::check_is_S7(object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using-nichetools-with-the-package-SIBER.Rmd' failed with diagnostics:
objectmust be an , not a S3 --- failed re-building ‘using-nichetools-with-the-package-SIBER.Rmd’--- re-building ‘using-nichetools-with-the-package-nicheROVER.Rmd’ using rmarkdown ```
NiLeDAM
- Version: 0.3
- GitHub: NA
- Source code: https://github.com/cran/NiLeDAM
- Date/Publication: 2023-09-18 06:00:02 UTC
- Number of recursive dependencies: 83
Run
revdepcheck::cloud_details(, "NiLeDAM")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(NiLeDAM)
Welcome to the NiLeDAM package...
expected[2:2]: "ggplot" ── Failure ('test-popline.R:22:3'): test result on 'ageTests' plotted correctly ── typeof(p) (actual) not equal to "list" (expected).actual: "object"expected: "list"[ FAIL 8 | WARN 10 | SKIP 0 | PASS 49 ] Error: Test failures Execution halted ```
NIMAA
- Version: 0.2.1
- GitHub: https://github.com/jafarilab/NIMAA
- Source code: https://github.com/cran/NIMAA
- Date/Publication: 2022-04-11 14:12:45 UTC
- Number of recursive dependencies: 179
Run
revdepcheck::cloud_details(, "NIMAA")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘NIMAA-Ex.R’ failed The error most likely occurred in:
Name: extractSubMatrix
Title: Extract the non-missing submatrices from a given matrix.
Aliases: extractSubMatrix
** Examples
load part of the beatAML data
... ℹ See also
vignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the NIMAA package. Please report the issue at https://github.com/jafarilab/NIMAA/issues. Warning: Usingsizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ℹ The deprecated feature was likely used in the NIMAA package. Please report the issue at https://github.com/jafarilab/NIMAA/issues. Error in pm[[2]] : subscript out of bounds Calls: extractSubMatrix ... plotSubmatrix -> print -> -> ggplotly.ggplot -> gg2list Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(NIMAA) > > test_check("NIMAA") binmatnest.temperature 13.21346 Size of Square: 66 rows x 66 columns ...
- └─NIMAA::extractSubMatrix(...) at test-extract-nonmissing-submatrix.R:5:3
- └─NIMAA:::plotSubmatrix(...)
- ├─base::print(plotly::ggplotly(p))
- ├─plotly::ggplotly(p)
- └─plotly:::ggplotly.ggplot(p)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 8 | SKIP 0 | PASS 7 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘NIMAA-vignette.Rmd’ using rmarkdown
Quitting from NIMAA-vignette.Rmd:48-57 [plotIncMatrix function] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of boundsBacktrace: ...
Error: processing vignette 'NIMAA-vignette.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘NIMAA-vignette.Rmd’
SUMMARY: processing the following file failed: ‘NIMAA-vignette.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
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checking installed package size ... NOTE
installed size is 6.5Mb sub-directories of 1Mb or more: data 2.0Mb doc 4.0Mb -
checking data for non-ASCII characters ... NOTE
Note: found 24 marked UTF-8 strings
nlmixr2plot
- Version: 3.0.1
- GitHub: https://github.com/nlmixr2/nlmixr2plot
- Source code: https://github.com/cran/nlmixr2plot
- Date/Publication: 2025-02-14 15:10:02 UTC
- Number of recursive dependencies: 159
Run
revdepcheck::cloud_details(, "nlmixr2plot")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(nlmixr2plot) > > test_check("nlmixr2plot") > loading into symengine environment... > pruning branches (if/else) of saem model... v done ...expected`: TRUE ── Failure ('test-add.R:45:3'): test addition operator ───────────────────────── inherits(p2[[1]], "gg") is not TRUEactual: FALSEexpected: TRUE[ FAIL 2 | WARN 4 | SKIP 2 | PASS 33 ] Error: Test failures Execution halted ```
nonmem2R
- Version: 0.2.5
- GitHub: NA
- Source code: https://github.com/cran/nonmem2R
- Date/Publication: 2024-03-11 17:30:02 UTC
- Number of recursive dependencies: 61
Run
revdepcheck::cloud_details(, "nonmem2R")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘nonmem2R-Ex.R’ failed The error most likely occurred in:
Name: basic.GOF4
Title: Basic 4- and 6-panel GOF
Aliases: basic.GOF4 basic.GOF6
** Examples
Get path to the example files included in nonmem2R package
... 22. │ └─l$compute_position(d, layout) 23. │ └─ggplot2 (local) compute_position(..., self = self) 24. │ └─self$position$setup_data(data, params) 25. │ └─ggplot2 (local) setup_data(..., self = self) 26. └─base::.handleSimpleError(...) 27. └─rlang (local) h(simpleError(msg, call)) 28. └─handlers[1L] 29. └─cli::cli_abort(...) 30. └─rlang::abort(...) Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘GOFvignette.Rmd’ using rmarkdown
normfluodbf
- Version: 2.0.0
- GitHub: https://github.com/AlphaPrime7/normfluodbf
- Source code: https://github.com/cran/normfluodbf
- Date/Publication: 2024-09-27 23:10:03 UTC
- Number of recursive dependencies: 126
Run
revdepcheck::cloud_details(, "normfluodbf")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ▆
- ├─... %>% ... at test_plot_dev.R:13:3
- └─normfluodbf:::plot_dev_with_custom_legends(...)
- ├─plotly::ggplotly(p)
- └─plotly:::ggplotly.ggplot(p)
- └─plotly::gg2list(...)
[ FAIL 4 | WARN 613 | SKIP 0 | PASS 15 ] Error: Test failures Execution halted ```
nzelect
- Version: 0.4.0
- GitHub: NA
- Source code: https://github.com/cran/nzelect
- Date/Publication: 2017-10-02 20:35:23 UTC
- Number of recursive dependencies: 79
Run
revdepcheck::cloud_details(, "nzelect")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘README.Rmd’ using rmarkdown
In both
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checking installed package size ... NOTE
installed size is 5.3Mb sub-directories of 1Mb or more: data 5.0Mb -
checking data for non-ASCII characters ... NOTE
Note: found 6409 marked UTF-8 strings
occCite
- Version: 0.5.9
- GitHub: https://github.com/ropensci/occCite
- Source code: https://github.com/cran/occCite
- Date/Publication: 2024-10-28 13:30:06 UTC
- Number of recursive dependencies: 131
Run
revdepcheck::cloud_details(, "occCite")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(occCite) > > test_check("occCite")
OccCite query occurred on: 20 June, 2024
... ── Failure ('test-sumFig.R:40:3'): sumFig works when plotting only source by species ── class(test[[1]][[1]]) not equal to "ggplot_built". Lengths differ: 4 is not 1 ── Failure ('test-sumFig.R:48:3'): sumFig works when plotting only aggregator by species ── class(test[[1]][[1]]) not equal to "ggplot_built". Lengths differ: 4 is not 1
[ FAIL 9 | WARN 1 | SKIP 20 | PASS 114 ] Error: Test failures Execution halted ```
In both
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checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ape’ All declared Imports should be used. -
checking data for non-ASCII characters ... NOTE
Note: found 7 marked UTF-8 strings
ofpetrial
- Version: 0.1.2
- GitHub: https://github.com/DIFM-Brain/ofpetrial
- Source code: https://github.com/cran/ofpetrial
- Date/Publication: 2024-12-11 23:00:02 UTC
- Number of recursive dependencies: 147
Run
revdepcheck::cloud_details(, "ofpetrial")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘ofpetrial-Ex.R’ failed The error most likely occurred in:
Name: check_ortho_with_chars
Title: Check the orthogonality with field/topographic characteristics
Aliases: check_ortho_with_chars
** Examples
data(td_single_input) ... 30. └─plt$build() 31. └─private$addLimits(margThemed) 32. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish) 33. └─ggplot2::continuous_scale(...) 34. └─ggplot2:::check_continuous_limits(limits, call = call) 35. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE) 36. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) 37. └─ggplot2:::stop_input_type(...) 38. └─rlang::abort(message, ..., call = call, arg = arg) Execution halted ```
ogrdbstats
- Version: 0.5.2
- GitHub: https://github.com/airr-community/ogrdbstats
- Source code: https://github.com/cran/ogrdbstats
- Date/Publication: 2024-11-03 06:10:02 UTC
- Number of recursive dependencies: 130
Run
revdepcheck::cloud_details(, "ogrdbstats")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘ogrdbstats-Ex.R’ failed The error most likely occurred in:
Name: make_novel_base_grobs
Title: Create plots showing base usage at selected locations in
sequences based on novel alleles
Aliases: make_novel_base_grobs
** Examples
base_grobs = make_novel_base_grobs( + example_rep$inferred_seqs, + example_rep$input_sequences, + 'V', + FALSE + ) Error: object is invalid: - every label must be named. Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Using_ogrdbstats.Rmd’ using rmarkdown
Quitting from Using_ogrdbstats.Rmd:277-296 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! object is invalid: - every label must be named.
... Error: processing vignette 'Using_ogrdbstats.Rmd' failed with diagnostics: object is invalid: - every label must be named. --- failed re-building ‘Using_ogrdbstats.Rmd’
SUMMARY: processing the following file failed: ‘Using_ogrdbstats.Rmd’
Error: Vignette re-building failed. Execution halted ```
OmicNavigator
- Version: 1.15.0
- GitHub: https://github.com/abbvie-external/OmicNavigator
- Source code: https://github.com/cran/OmicNavigator
- Date/Publication: 2025-05-28 19:40:02 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "OmicNavigator")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > # Test files in inst/tinytest/ > if (requireNamespace("tinytest", quietly = TRUE)) {
- suppressMessages(tinytest::test_package("OmicNavigator"))
- }
testAdd.R..................... 0 tests testAdd.R..................... 0 tests ... testPlot.R.................... 140 tests [0;31m1 fails[0m testPlot.R.................... 140 tests [0;31m1 fails[0m testPlot.R.................... 141 tests [0;31m1 fails[0m testPlot.R.................... 141 tests [0;31m1 fails[0m testPlot.R.................... 141 tests [0;31m1 fails[0m testPlot.R.................... 142 tests [0;31m1 fails[0m testPlot.R.................... 142 tests [0;31m1 fails[0m testPlot.R.................... 143 tests [0;31m1 fails[0m Error in pm[[2]] : subscript out of bounds Calls: suppressMessages ... plotStudy -> f -> -> ggplotly.ggplot -> gg2list Execution halted ```
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checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘OmicNavigatorAPI.Rnw’ using Sweave OmicNavigator R package version: 1.15.0 The app is not installed. Install it with installApp() Installing study "ABC" in /tmp/RtmppgkVeU/file1ce750eab033 Exporting study "ABC" as an R package Note: No maintainer email was specified. Using the placeholder: Unknown unknown@unknown Calculating pairwise overlaps. This may take a while... Exported study to /tmp/RtmppgkVeU/ONstudyABC Success! ... l.14 ^^M
! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘OmicNavigatorUsersGuide.Rnw’
SUMMARY: processing the following files failed: ‘OmicNavigatorAPI.Rnw’ ‘OmicNavigatorUsersGuide.Rnw’
Error: Vignette re-building failed. Execution halted ```
ordinalsimr
- Version: 0.2.1
- GitHub: https://github.com/NeuroShepherd/ordinalsimr
- Source code: https://github.com/cran/ordinalsimr
- Date/Publication: 2025-06-04 07:10:02 UTC
- Number of recursive dependencies: 118
Run
revdepcheck::cloud_details(, "ordinalsimr")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ── Error ('test-utils.R:70:3'): test the plot_power() function ───────────────── Error inexpect_match(plot_obj$labels$ymin, "lower_power_bound")`: is.character(act$val) is not TRUE Backtrace: ▆- └─testthat::expect_match(plot_obj$labels$ymin, "lower_power_bound") at test-utils.R:70:3
- └─base::stopifnot(is.character(act$val))
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 69 ] Error: Test failures Execution halted ```
ordr
- Version: 0.1.1
- GitHub: https://github.com/corybrunson/ordr
- Source code: https://github.com/cran/ordr
- Date/Publication: 2022-10-20 20:52:35 UTC
- Number of recursive dependencies: 106
Run
revdepcheck::cloud_details(, "ordr")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘ordr-Ex.R’ failed The error most likely occurred in:
Name: biplot-stats
Title: Convenience stats for row and column matrix factors
Aliases: biplot-stats stat_rows_ellipse stat_cols_ellipse
stat_rows_center stat_cols_center stat_rows_star stat_cols_star
stat_rows_chull stat_cols_chull stat_rows_cone stat_cols_cone
stat_rows_scale stat_cols_scale stat_rows_spantree stat_cols_spantree
... + type = "qual", palette = 2, + aesthetics = c("color", "fill") + ) + + ggtitle( + "Row-principal PCA biplot of Anderson iris measurements", + "Overlaid with 95% confidence disks" + ) Error: object properties are invalid: - @mapping must be , not Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ordr) Loading required package: ggplot2 > > test_check("ordr") [ FAIL 2 | WARN 0 | SKIP 0 | PASS 181 ]
... ▆ 1. └─ordr::ggbiplot(m) at test-stat-spantree.r:10:5 2. ├─base::
$<-(*tmp*, "mapping", value =<named list>) 3. └─ggplot2:::$<-.ggplot2::gg(*tmp*, "mapping", value =<named list>) 4. └─S7::props<-(*tmp*, value =[[<-(S7::props(x), i, value)) 5. └─S7::validate(object)[ FAIL 2 | WARN 0 | SKIP 0 | PASS 181 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘cmds-variables.rmd’ using rmarkdown
In both
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checking Rd files ... NOTE
checkRd: (-1) lra-ord.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lra-ord.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lra-ord.Rd:57-58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lra-ord.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lra-ord.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly -
checking data for non-ASCII characters ... NOTE
Note: found 4 marked UTF-8 strings
pacu
- Version: 0.1.63
- GitHub: https://github.com/cldossantos/pacu
- Source code: https://github.com/cran/pacu
- Date/Publication: 2025-05-29 21:50:02 UTC
- Number of recursive dependencies: 168
Run
revdepcheck::cloud_details(, "pacu")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘pacu.Rmd’ using rmarkdown --- finished re-building ‘pacu.Rmd’
--- re-building ‘pacu_faq.Rmd’ using rmarkdown --- finished re-building ‘pacu_faq.Rmd’
--- re-building ‘pacu_sat.Rmd’ using rmarkdown ```
In both
- checking installed package size ... NOTE
installed size is 5.7Mb sub-directories of 1Mb or more: extdata 4.8Mb
pafr
- Version: 0.0.2
- GitHub: https://github.com/dwinter/pafr
- Source code: https://github.com/cran/pafr
- Date/Publication: 2020-12-08 10:20:12 UTC
- Number of recursive dependencies: 110
Run
revdepcheck::cloud_details(, "pafr")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pafr) Loading required package: ggplot2 > > test_check("pafr") [ FAIL 6 | WARN 2 | SKIP 0 | PASS 70 ]
... ── Failure ('test_plot.r:11:5'): dotplot works produces a plot ───────────────── unname(labs["xintercept"]) not equal to "xintercept". target is NULL, current is character ── Failure ('test_plot.r:12:5'): dotplot works produces a plot ───────────────── unname(labs["yintercept"]) not equal to "yintercept". target is NULL, current is character
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 70 ] Error: Test failures Execution halted ```
-
checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.dotplot_hl: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
palettes
- Version: 0.2.1
- GitHub: https://github.com/mccarthy-m-g/palettes
- Source code: https://github.com/cran/palettes
- Date/Publication: 2024-07-13 23:10:01 UTC
- Number of recursive dependencies: 111
Run
revdepcheck::cloud_details(, "palettes")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘palettes-Ex.R’ failed The error most likely occurred in:
Name: scale_colour_palette_d
Title: Colour scales from colour vectors and colour palettes
Aliases: scale_colour_palette_d scale_fill_palette_d
scale_colour_palette_c scale_fill_palette_c scale_colour_palette_b
scale_fill_palette_b scale_color_palette_d scale_color_palette_c
scale_color_palette_b
... 26. └─vctrs::vec_default_cast(...) 27. ├─base::withRestarts(...) 28. │ └─base (local) withOneRestart(expr, restarts[[1L]]) 29. │ └─base (local) doWithOneRestart(return(expr), restart) 30. └─vctrs::stop_incompatible_cast(...) 31. └─vctrs::stop_incompatible_type(...) 32. └─vctrs:::stop_incompatible(...) 33. └─vctrs:::stop_vctrs(...) 34. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘biscale.Rmd’ using rmarkdown
paramix
- Version: 0.0.2
- GitHub: NA
- Source code: https://github.com/cran/paramix
- Date/Publication: 2025-06-10 14:50:02 UTC
- Number of recursive dependencies: 76
Run
revdepcheck::cloud_details(, "paramix")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘intro.Rmd’ using rmarkdown
patchwork
- Version: 1.3.0
- GitHub: https://github.com/thomasp85/patchwork
- Source code: https://github.com/cran/patchwork
- Date/Publication: 2024-09-16 09:30:02 UTC
- Number of recursive dependencies: 92
Run
revdepcheck::cloud_details(, "patchwork")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘patchwork-Ex.R’ failed The error most likely occurred in:
Name: plot_arithmetic
Title: Plot arithmetic
Aliases: plot_arithmetic -.ggplot /.ggplot |.ggplot *.gg &.gg
** Examples
library(ggplot2) ...
Stacking and packing
(p1 | p2 | p3) / + p4
Add elements to the same nesting level
(p1 + (p2 + p3) + p4 + plot_layout(ncol = 1)) * theme_bw() Error: Can't find method for generic
*(e1, e2): - e1: - e2: Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(patchwork) > > test_check("patchwork") [ FAIL 1 | WARN 1 | SKIP 11 | PASS 0 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════ ... • layout/insets-can-be-changed.svg • layout/other-alignments-work.svg • layout/patchworks-can-be-inset.svg • layout/setting-heights-as-units.svg • layout/setting-heights.svg • layout/setting-nrow.svg • layout/setting-widths-as-units.svg • layout/setting-widths.svg Error: Test failures Execution halted ```
-
checking S3 generic/method consistency ... WARNING ``` ggplot_gtable: function(plot) ggplot_gtable.fixed_dim_build: function(data)
ggplot_add: function(object, plot, ...) ggplot_add.formula: function(object, plot, object_name)
... function(object, plot, ...) ggplot_add.grob: function(object, plot, object_name)
ggplot_build: function(plot, ...) ggplot_build.fixed_dim_ggplot: function(plot) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
pathfindR
- Version: 2.4.2
- GitHub: https://github.com/egeulgen/pathfindR
- Source code: https://github.com/cran/pathfindR
- Date/Publication: 2025-02-17 09:30:02 UTC
- Number of recursive dependencies: 142
Run
revdepcheck::cloud_details(, "pathfindR")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat-active_snw.R’ Running ‘testthat-clustering.R’ Running ‘testthat-comparison.R’ Running ‘testthat-core.R’ Running ‘testthat-data_generation.R’ Running ‘testthat-enrichment.R’ Running ‘testthat-scoring.R’ Running the tests in ‘tests/testthat-scoring.R’ failed. Complete output: > library(testthat) ... ── Failure ('test-scoring.R:113:9'):plot_scores()-- creates term score heatmap ggplot object with correct labels ── g$labels$x not identical to "Sample". target is NULL, current is character ── Failure ('test-scoring.R:114:9'):plot_scores()` -- creates term score heatmap ggplot object with correct labels ── g$labels$y not identical to "Term". target is NULL, current is character[ FAIL 8 | WARN 0 | SKIP 0 | PASS 37 ] Error: Test failures Execution halted ```
pathviewr
- Version: 1.1.7
- GitHub: https://github.com/ropensci/pathviewr
- Source code: https://github.com/cran/pathviewr
- Date/Publication: 2023-03-08 08:10:05 UTC
- Number of recursive dependencies: 188
Run
revdepcheck::cloud_details(, "pathviewr")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pathviewr) > #library(vdiffr) > > test_check("pathviewr") [ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ]
... ── Error ('test-plot_by_subject.R:168:3'): elev views wrangled correctly via tidyverse ── Error in
expect_match(elev_all_plots[[3]][[4]][["labels"]][["x"]], "position_height"): is.character(act$val) is not TRUE Backtrace: ▆ 1. └─testthat::expect_match(...) at test-plot_by_subject.R:168:3 2. └─base::stopifnot(is.character(act$val))[ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ] Error: Test failures Execution halted ```
PatientLevelPrediction
- Version: 6.4.1
- GitHub: https://github.com/OHDSI/PatientLevelPrediction
- Source code: https://github.com/cran/PatientLevelPrediction
- Date/Publication: 2025-04-20 09:40:02 UTC
- Number of recursive dependencies: 215
Run
revdepcheck::cloud_details(, "PatientLevelPrediction")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘PatientLevelPrediction-Ex.R’ failed The error most likely occurred in:
Name: outcomeSurvivalPlot
Title: Plot the outcome incidence over time
Aliases: outcomeSurvivalPlot
** Examples
Don't show:
... Warning: Ignoring unknown labels: • fill : "Strata" • linetype : "1" Warning: Ignoring unknown labels: • fill : "Strata" • linetype : "1" Warning: Ignoring unknown labels: • colour : "Strata" Error:
objectmust be an , not a S3 Execution halted ```
patientProfilesVis
- Version: 2.0.9
- GitHub: https://github.com/openanalytics/patientProfilesVis
- Source code: https://github.com/cran/patientProfilesVis
- Date/Publication: 2024-06-18 09:00:02 UTC
- Number of recursive dependencies: 98
Run
revdepcheck::cloud_details(, "patientProfilesVis")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘patientProfiles-template-SDTM.Rmd’ using rmarkdown --- finished re-building ‘patientProfiles-template-SDTM.Rmd’
--- re-building ‘patientProfilesVis-introduction.Rmd’ using rmarkdown
Quitting from patientProfilesVis-introduction.Rmd:167-171 [text-wideFormat-include] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ...
Error: processing vignette 'patientProfilesVis-introduction.Rmd' failed with diagnostics: The
plot.margintheme element must be a vector of length 4 --- failed re-building ‘patientProfilesVis-introduction.Rmd’SUMMARY: processing the following file failed: ‘patientProfilesVis-introduction.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(patientProfilesVis) > > test_check("patientProfilesVis") [ FAIL 21 | WARN 23 | SKIP 20 | PASS 330 ]
== Skipped tests (20) ================================================================================================================================================================================== ... 24. -ggplot2:::plot_theme(plot) 25. -ggplot2:::check_theme(theme) 26. -base::mapply(...) 27. -ggplot2 (local)
<fn>(...) 28. -cli::cli_abort(...) 29. -rlang::abort(...)[ FAIL 21 | WARN 23 | SKIP 20 | PASS 330 ] Error: Test failures Execution halted ```
-
checking installed package size ... NOTE
installed size is 5.7Mb sub-directories of 1Mb or more: doc 5.2Mb
pcr
- Version: 1.2.2
- GitHub: https://github.com/MahShaaban/pcr
- Source code: https://github.com/cran/pcr
- Date/Publication: 2020-04-01 06:10:02 UTC
- Number of recursive dependencies: 68
Run
revdepcheck::cloud_details(, "pcr")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pcr) > > test_check("pcr") [ FAIL 12 | WARN 1 | SKIP 0 | PASS 74 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Failure ('test_plotting_fun.R:68:3'): .pcr_plot_assess returns an efficiency plot ── class(gg) not identical to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test_plotting_fun.R:79:3'): .pcr_plot_assess returns standard_curve plots ── class(gg) not identical to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 12 | WARN 1 | SKIP 0 | PASS 74 ] Error: Test failures Execution halted ```
pdxTrees
- Version: 0.4.0
- GitHub: https://github.com/mcconvil/pdxTrees
- Source code: https://github.com/cran/pdxTrees
- Date/Publication: 2020-08-17 14:00:02 UTC
- Number of recursive dependencies: 102
Run
revdepcheck::cloud_details(, "pdxTrees")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘pdxTrees-vignette.Rmd’ using rmarkdown
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
pedbp
- Version: 2.0.2
- GitHub: https://github.com/dewittpe/pedbp
- Source code: https://github.com/cran/pedbp
- Date/Publication: 2025-01-07 20:40:01 UTC
- Number of recursive dependencies: 116
Run
revdepcheck::cloud_details(, "pedbp")for more infoNewly broken
- checking tests ... ERROR
Running ‘test-bmi_for_age.R’ Running ‘test-bp-by-source.R’ Running ‘test-bp_cdf.R’ Running the tests in ‘tests/test-bp_cdf.R’ failed. Complete output: > library(pedbp) > > ################################################################################ > x <- bp_cdf(age = 96, male = 1, sbp = 103, dbp = 55) > stopifnot(identical(class(x), c("gg", "ggplot"))) Error: identical(class(x), c("gg", "ggplot")) is not TRUE Execution halted
In both
- checking installed package size ... NOTE
installed size is 7.1Mb sub-directories of 1Mb or more: libs 5.3Mb
personalized
- Version: 0.2.7
- GitHub: https://github.com/jaredhuling/personalized
- Source code: https://github.com/cran/personalized
- Date/Publication: 2022-06-27 20:20:03 UTC
- Number of recursive dependencies: 90
Run
revdepcheck::cloud_details(, "personalized")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > Sys.setenv("R_TESTS" = "") > library(testthat) > library(personalized) Loading required package: glmnet Loading required package: Matrix Loaded glmnet 4.1-9 Loading required package: mgcv ...
- └─personalized:::plot.subgroup_validated(subgrp.val, type = "stability")
- ├─plotly::subplot(...)
- │ └─plotly:::dots2plots(...)
- ├─plotly::ggplotly(p.primary, tooltip = paste0("tooltip", 1:4))
- └─plotly:::ggplotly.ggplot(...)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 215 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) fit.subgroup.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:61: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:63: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:65: Lost braces in \itemize; meant \describe ? ... checkRd: (-1) fit.subgroup.Rd:179-181: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:182: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:183: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit.subgroup.Rd:184: Lost braces in \itemize; meant \describe ? checkRd: (-1) validate.subgroup.Rd:77-81: Lost braces in \enumerate; meant \describe ? checkRd: (-1) validate.subgroup.Rd:82-86: Lost braces in \enumerate; meant \describe ? checkRd: (-1) validate.subgroup.Rd:89-92: Lost braces in \enumerate; meant \describe ? checkRd: (-1) weighted.ksvm.Rd:21: Lost braces; missing escapes or markup? 21 | \item{y}{The response vector (either a character vector, factor vector, or numeric vector with values in {-1, 1})} | ^
phylepic
- Version: 0.2.0
- GitHub: https://github.com/cidm-ph/phylepic
- Source code: https://github.com/cran/phylepic
- Date/Publication: 2024-05-31 19:10:02 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "phylepic")for more infoNewly broken
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checking S3 generic/method consistency ... WARNING ``` ggplot_gtable: function(plot) ggplot_gtable.phylepic_ggplot_build: function(data)
ggplot_build: function(plot, ...) ggplot_build.phylepic_ggplot: function(plot) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
PieGlyph
- Version: 1.0.0
- GitHub: https://github.com/rishvish/PieGlyph
- Source code: https://github.com/cran/PieGlyph
- Date/Publication: 2024-06-28 12:00:02 UTC
- Number of recursive dependencies: 87
Run
revdepcheck::cloud_details(, "PieGlyph")for more infoNewly broken
- checking whether package ‘PieGlyph’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘PieGlyph’ ... ** package ‘PieGlyph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error in get(x, envir = ns, inherits = FALSE) : object 'is.waive' not found Error: unable to load R code in package ‘PieGlyph’ Execution halted ERROR: lazy loading failed for package ‘PieGlyph’ * removing ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/PieGlyph’CRAN
* installing *source* package ‘PieGlyph’ ... ** package ‘PieGlyph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PieGlyph)plantTracker
- Version: 1.1.0
- GitHub: https://github.com/aestears/plantTracker
- Source code: https://github.com/cran/plantTracker
- Date/Publication: 2023-05-05 18:20:02 UTC
- Number of recursive dependencies: 80
Run
revdepcheck::cloud_details(, "plantTracker")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘Suggested_plantTracker_Workflow.Rmd’ using rmarkdown Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : number of items to replace is not a multiple of replacement length Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : number of items to replace is not a multiple of replacement length Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : number of items to replace is not a multiple of replacement length Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : number of items to replace is not a multiple of replacement length Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : number of items to replace is not a multiple of replacement length Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : number of items to replace is not a multiple of replacement length
Plasmidprofiler
- Version: 0.1.6
- GitHub: NA
- Source code: https://github.com/cran/Plasmidprofiler
- Date/Publication: 2017-01-06 01:10:47
- Number of recursive dependencies: 80
Run
revdepcheck::cloud_details(, "Plasmidprofiler")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘Plasmidprofiler-Ex.R’ failed The error most likely occurred in:
Name: main
Title: Main: Run everything
Aliases: main
** Examples
main(blastdata, ... Saving 12 x 7 in image Warning: Vectorized input to
element_text()is not officially supported. ℹ Results may be unexpected or may change in future versions of ggplot2. Warning in geom_tile(aes(x = Plasmid, y = Sample, label = AMR_gene, fill = Inc_group, : Ignoring unknown aesthetics: label and text Warning: Use ofreport$Surenessis discouraged. ℹ UseSurenessinstead. Error in pm[[2]] : subscript out of bounds Calls: main ... -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
plotdap
- Version: 1.0.3
- GitHub: https://github.com/rmendels/plotdap
- Source code: https://github.com/cran/plotdap
- Date/Publication: 2023-10-17 22:00:15 UTC
- Number of recursive dependencies: 109
Run
revdepcheck::cloud_details(, "plotdap")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘plotdap-Ex.R’ failed The error most likely occurred in:
Name: add_ggplot
Title: Add ggplot2 elements to a plotdap object
Aliases: add_ggplot
** Examples
... + crs = "+proj=laea +y_0=0 +lon_0=155 +lat_0=-90 +ellps=WGS84 +no_defs") Loading required package: maps p <- add_ggplot( + p, + ggplot2::theme_bw() + ) Error in .Primitive("@")(NULL, properties) : no applicable method for
@applied to an object of class "NULL" Calls: add_ggplot ... -> validate -> validate_properties -> @ -> do.call Execution halted ``` -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘using_plotdap.Rmd’ using rmarkdown
Quitting from using_plotdap.Rmd:57-61 [world] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! no applicable method for
@applied to an object of class "NULL"Backtrace: ...
Error: processing vignette 'using_plotdap.Rmd' failed with diagnostics: no applicable method for
@applied to an object of class "NULL" --- failed re-building ‘using_plotdap.Rmd’SUMMARY: processing the following file failed: ‘using_plotdap.Rmd’
Error: Vignette re-building failed. Execution halted ```
plotDK
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/plotDK
- Date/Publication: 2021-10-01 08:00:02 UTC
- Number of recursive dependencies: 82
Run
revdepcheck::cloud_details(, "plotDK")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(plotDK) > > test_check("plotDK") [ FAIL 4 | WARN 0 | SKIP 0 | PASS 46 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Failure ('test-plotDK.R:72:5'): The returned plot has the correct labels ──── labels$fill not equal to "test_label". target is NULL, current is character ── Failure ('test-plotDK.R:81:5'): The returned plot has the correct labels ──── labels$fill not equal to "fill". target is NULL, current is character
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 46 ] Error: Test failures Execution halted ```
In both
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘mapproj’ All declared Imports should be used. -
checking data for non-ASCII characters ... NOTE
Note: found 12992 marked UTF-8 strings
PlotFTIR
- Version: 1.2.0
- GitHub: https://github.com/NRCan/PlotFTIR
- Source code: https://github.com/cran/PlotFTIR
- Date/Publication: 2025-03-31 15:30:06 UTC
- Number of recursive dependencies: 104
Run
revdepcheck::cloud_details(, "PlotFTIR")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...expectedis a character vector ('Transmittance (a.u.)') ── Failure ('test-plot_ftir.R:28:3'): Plots are generated ────────────────────── p5$label$y (actual) not equal to "Normalized Absorbance" (expected`).actualis NULLexpectedis a character vector ('Normalized Absorbance')[ FAIL 6 | WARN 58 | SKIP 0 | PASS 513 ] Error: Test failures Execution halted ```
plotly
- Version: 4.10.4
- GitHub: https://github.com/plotly/plotly.R
- Source code: https://github.com/cran/plotly
- Date/Publication: 2024-01-13 22:40:02 UTC
- Number of recursive dependencies: 134
Run
revdepcheck::cloud_details(, "plotly")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘plotly-Ex.R’ failed The error most likely occurred in:
Name: style
Title: Modify trace(s)
Aliases: style
** Examples
Don't show:
... + # this clobbers the previously supplied marker.line.color + style(p, marker.line = list(width = 2.5), marker.size = 10) + ## Don't show: + }) # examplesIf (p <- ggplotly(qplot(data = mtcars, wt, mpg, geom = c("point", "smooth")))) Warning:
qplot()was deprecated in ggplot2 3.4.0.geom_smooth()using method = 'loess' and formula = 'y ~ x' Error in pm[[2]] : subscript out of bounds Calls: ... eval -> eval -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("plotly") Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2': ... • plotly-subplot/subplot-bump-axis-annotation.svg • plotly-subplot/subplot-bump-axis-image.svg • plotly-subplot/subplot-bump-axis-shape-shared.svg • plotly-subplot/subplot-bump-axis-shape.svg • plotly-subplot/subplot-reposition-annotation.svg • plotly-subplot/subplot-reposition-image.svg • plotly-subplot/subplot-reposition-shape-fixed.svg • plotly-subplot/subplot-reposition-shape.svg Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 7.1Mb sub-directories of 1Mb or more: R 1.0Mb htmlwidgets 4.0Mb
plotor
- Version: 0.6.0
- GitHub: https://github.com/craig-parylo/plotor
- Source code: https://github.com/cran/plotor
- Date/Publication: 2025-05-28 11:50:02 UTC
- Number of recursive dependencies: 139
Run
revdepcheck::cloud_details(, "plotor")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘plotor-Ex.R’ failed The error most likely occurred in:
Name: table_or
Title: Table OR
Aliases: table_or
** Examples
get some data
... 40. │ └─self$draw_panel(...) 41. │ └─ggplot2 (local) draw_panel(..., self = self) 42. │ └─grid:::Ops.unit(data$linewidth, 0) 43. │ └─base::stop(...) 44. └─base::.handleSimpleError(...) 45. └─rlang (local) h(simpleError(msg, call)) 46. └─handlers[1L] 47. └─cli::cli_abort(...) 48. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... ── Failure ('test-plot_or.R:7:3'):plot_or()does not produce messages or warnings ──{ ... }produced warnings. ── Failure ('test-plot_or.R:13:3'):plot_or()does not produce messages or warnings ──{ ... }` produced warnings.[ FAIL 2 | WARN 24 | SKIP 1 | PASS 26 ] Deleting unused snapshots: • plot_or/plot-diabetes.svg Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘using_plotor.Rmd’ using rmarkdown
plotROC
- Version: 2.3.1
- GitHub: https://github.com/sachsmc/plotROC
- Source code: https://github.com/cran/plotROC
- Date/Publication: 2023-10-06 12:40:02 UTC
- Number of recursive dependencies: 73
Run
revdepcheck::cloud_details(, "plotROC")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘plotROC-Ex.R’ failed The error most likely occurred in:
Name: calc_auc
Title: Calculate the Area under the ROC curve
Aliases: calc_auc
** Examples
D.ex <- rbinom(50, 1, .5) ... ggroc <- ggplot(rocdata, aes(m = M, d = D)) + geom_roc() calc_auc(ggroc) Error in
rlang::quo_get_expr(): !quomust be a quosure Backtrace: ▆ 1. ├─plotROC::calc_auc(ggroc) 2. │ └─rlang::quo_get_expr(l2$plot$mapping[current_name][[1]]) 3. └─rlang::abort(message = message) Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(plotROC) Loading required package: ggplot2 > > test_check("plotROC") [ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
... 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::nrow(calc_auc(ggroc_p)) 5. ├─plotROC::calc_auc(ggroc_p) 6. │ └─rlang::quo_get_expr(l2$plot$mapping[current_name][[1]]) 7. └─rlang::abort(message = message)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘examples.Rmd’ using rmarkdown
plotthis
- Version: 0.7.0
- GitHub: https://github.com/pwwang/plotthis
- Source code: https://github.com/cran/plotthis
- Date/Publication: 2025-05-31 05:00:02 UTC
- Number of recursive dependencies: 212
Run
revdepcheck::cloud_details(, "plotthis")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘plotthis-Ex.R’ failed The error most likely occurred in:
Name: QQPlot
Title: QQ plot
Aliases: QQPlot
** Examples
set.seed(8525) ... 26. │ └─ggplot2 (local) FUN(X[[i]], ...) 27. │ └─self$draw_group(group, panel_params, coord, ...) 28. │ └─ggplot2 (local) draw_group(...) 29. │ └─ggplot2 (local) draw_group(..., self = self) 30. └─base::.handleSimpleError(...) 31. └─rlang (local) h(simpleError(msg, call)) 32. └─handlers[1L] 33. └─cli::cli_abort(...) 34. └─rlang::abort(...) Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.0Mb sub-directories of 1Mb or more: R 1.5Mb help 3.3Mb
pmartR
- Version: 2.5.0
- GitHub: https://github.com/pmartR/pmartR
- Source code: https://github.com/cran/pmartR
- Date/Publication: 2025-04-23 18:00:02 UTC
- Number of recursive dependencies: 143
Run
revdepcheck::cloud_details(, "pmartR")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pmartR) > > test_check("pmartR") [ FAIL 1 | WARN 11 | SKIP 11 | PASS 2380 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════ ... • plots/plot-spansres-n-biomolecule-bar.svg • plots/plot-spansres.svg • plots/plot-statres-anova-volcano.svg • plots/plot-statres-anova.svg • plots/plot-statres-combined-volcano.svg • plots/plot-statres-combined.svg • plots/plot-statres-gtest.svg • plots/plot-totalcountfilt.svg Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 10.7Mb sub-directories of 1Mb or more: R 1.5Mb help 1.5Mb libs 6.6Mb
pmxTools
- Version: 1.3
- GitHub: https://github.com/kestrel99/pmxTools
- Source code: https://github.com/cran/pmxTools
- Date/Publication: 2023-02-21 16:00:08 UTC
- Number of recursive dependencies: 81
Run
revdepcheck::cloud_details(, "pmxTools")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pmxTools) Loading required package: patchwork > > test_check("pmxTools") [ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ]
... 44. └─handlers[1L] 45. └─cli::cli_abort(...) 46. └─rlang::abort(...)
[ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ] Deleting unused snapshots: • plot/conditioned-distplot.svg • plot/perc.svg Error: Test failures Execution halted ```
In both
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checking Rd files ... NOTE
checkRd: (-1) plot_scm.Rd:106: Lost braces; missing escapes or markup? 106 | \item{lookupDF}{A data frame containing a lookup table for node labels. By default, {plot_scm} will use the PSN model names. If a lookup table containing the fields `Model` and `Alias` is provided, model names in `Model` will be replaced in the output plots by mtaching labels in `Alias`.} | ^ checkRd: (-1) rnm.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:61: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:63: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:65: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:66: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:67: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) rnm.Rd:71: Lost braces in \itemize; meant \describe ? -
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘DiagrammeR’
pollster
- Version: 0.1.6
- GitHub: NA
- Source code: https://github.com/cran/pollster
- Date/Publication: 2023-05-12 19:00:05 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "pollster")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘crosstab3way.Rmd’ using rmarkdown
Quitting from crosstab3way.Rmd:40-54 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! object is invalid: - every label must be named.
... 3. └─S7::new_object(labels) 4. └─S7::validate(object, recursive = !parent_validated) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'crosstab3way.Rmd' failed with diagnostics: object is invalid: - every label must be named. --- failed re-building ‘crosstab3way.Rmd’
--- re-building ‘crosstabs.Rmd’ using rmarkdown ```
poppr
- Version: 2.9.6
- GitHub: https://github.com/grunwaldlab/poppr
- Source code: https://github.com/cran/poppr
- Date/Publication: 2024-03-15 17:40:02 UTC
- Number of recursive dependencies: 94
Run
revdepcheck::cloud_details(, "poppr")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘poppr-Ex.R’ failed The error most likely occurred in:
Name: genotype_curve
Title: Produce a genotype accumulation curve
Aliases: genotype_curve
** Examples
data(nancycats) nan_geno <- genotype_curve(nancycats) Error: object is invalid: - every label must be named. Execution halted ```
In both
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checking re-building of vignette outputs ... WARNING
`` Error(s) in re-building vignettes: ... --- re-building ‘algo.Rnw’ using knitr Error: processing vignette 'algo.Rnw' failed with diagnostics: Running 'texi2dvi' on 'algo.tex' failed. LaTeX errors: ! LaTeX Error: Filecolortbl.sty' not found.Type X to quit or to proceed, or enter new name. (Default extension: sty) ... l.4 \makeatletter ^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘algo.Rnw’
SUMMARY: processing the following file failed: ‘algo.Rnw’
Error: Vignette re-building failed. Execution halted ```
PoweREST
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/PoweREST
- Date/Publication: 2024-09-09 09:30:02 UTC
- Number of recursive dependencies: 180
Run
revdepcheck::cloud_details(, "PoweREST")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘PoweREST-Ex.R’ failed The error most likely occurred in:
Name: vis_XGBoost
Title: Visualization of the power estimations from XGBoost
Aliases: vis_XGBoost
** Examples
data(power_example) ...
Good: !!myquosure * rhs
Backtrace: ▆ 1. └─PoweREST::vis_XGBoost(...) 2. ├─base::eval(parse(text = txt3)) 3. │ └─base::eval(parse(text = txt3)) 4. └─rayshader::plot_gg(mtplot, width = 3.5, raytrace = FALSE, preview = TRUE) 5. └─rlang:::Ops.quosure(ggplotobj2$layers[[i]]$geom$default_aes$size, pointcontract) 6. └─rlang::abort(...) Execution halted ```
PPQplan
- Version: 1.1.0
- GitHub: https://github.com/allenzhuaz/PPQplan
- Source code: https://github.com/cran/PPQplan
- Date/Publication: 2020-10-08 04:30:06 UTC
- Number of recursive dependencies: 116
Run
revdepcheck::cloud_details(, "PPQplan")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘PPQnote.Rmd’ using rmarkdown --- finished re-building ‘PPQnote.Rmd’
--- re-building ‘PPQplan-vignette.Rmd’ using rmarkdown ```
In both
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checking installed package size ... NOTE
installed size is 12.1Mb sub-directories of 1Mb or more: doc 12.0Mb -
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
ppseq
- Version: 0.2.5
- GitHub: https://github.com/zabore/ppseq
- Source code: https://github.com/cran/ppseq
- Date/Publication: 2024-09-04 22:20:02 UTC
- Number of recursive dependencies: 101
Run
revdepcheck::cloud_details(, "ppseq")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘one_sample_expansion.Rmd’ using rmarkdown
Quitting from one_sample_expansion.Rmd:182-188 [unnamed-chunk-13] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ! subscript out of boundsBacktrace: ...
Error: processing vignette 'two_sample_randomized.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘two_sample_randomized.Rmd’
SUMMARY: processing the following files failed: ‘one_sample_expansion.Rmd’ ‘two_sample_randomized.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 11.0Mb sub-directories of 1Mb or more: doc 10.5Mb
precintcon
- Version: 2.3.0
- GitHub: https://github.com/lucasvenez/precintcon
- Source code: https://github.com/cran/precintcon
- Date/Publication: 2016-07-17 13:49:19
- Number of recursive dependencies: 25
Run
revdepcheck::cloud_details(, "precintcon")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘precintcon-Ex.R’ failed The error most likely occurred in:
Name: pplot.deciles
Title: Plot deciles
Aliases: pplot.deciles precintcon.plot.deciles
Keywords: deciles precipitation
** Examples
... 1. └─precintcon::pplot.deciles(monthly) 2. └─precintcon::precintcon.plot.deciles(...) 3. └─base::mapply(...) 4. └─precintcon (local)
<fn>(...) 5. └─ggplot2::geom_boxplot(...) 6. └─ggplot2::layer(...) 7. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)") 8. └─lifecycle:::deprecate_stop0(msg) 9. └─rlang::cnd_signal(...) Execution halted ```
predint
- Version: 2.2.1
- GitHub: https://github.com/MaxMenssen/predint
- Source code: https://github.com/cran/predint
- Date/Publication: 2024-03-04 15:10:03 UTC
- Number of recursive dependencies: 68
Run
revdepcheck::cloud_details(, "predint")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(predint) Loading required package: ggplot2 Loading required package: lme4 Loading required package: Matrix Loading required package: MASS
... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot.R:16:9'): plot must be a ggplot ───────────────────────── is.list(qp_plot) is not TRUE
actual: FALSEexpected: TRUE[ FAIL 1 | WARN 0 | SKIP 0 | PASS 304 ] Error: Test failures Execution halted ```
PredPsych
- Version: 0.4
- GitHub: NA
- Source code: https://github.com/cran/PredPsych
- Date/Publication: 2019-07-23 08:20:05 UTC
- Number of recursive dependencies: 107
Run
revdepcheck::cloud_details(, "PredPsych")for more infoNewly broken
- checking whether package ‘PredPsych’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘PredPsych’ See ‘/tmp/workdir/PredPsych/new/PredPsych.Rcheck/00install.out’ for details.
predRupdate
- Version: 0.2.0
- GitHub: https://github.com/GlenMartin31/predRupdate
- Source code: https://github.com/cran/predRupdate
- Date/Publication: 2024-08-23 14:20:02 UTC
- Number of recursive dependencies: 112
Run
revdepcheck::cloud_details(, "predRupdate")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(predRupdate) > > test_check("predRupdate") $OE_ratio [1] 1.900612
...
expected[2:2]: "ggplot" ── Failure ('test-flex_calplot.R:28:3'): flex_calplot works ──────────────────── class(...) (actual) not equal to c("gg", "ggplot") (expected).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 2 | WARN 0 | SKIP 4 | PASS 229 ] Error: Test failures Execution halted ```
priorsense
- Version: 1.1.0
- GitHub: https://github.com/n-kall/priorsense
- Source code: https://github.com/cran/priorsense
- Date/Publication: 2025-04-10 14:00:02 UTC
- Number of recursive dependencies: 120
Run
revdepcheck::cloud_details(, "priorsense")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(priorsense) > > test_check("priorsense") [ FAIL 1 | WARN 0 | SKIP 2 | PASS 91 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test_cmdstan.R:5:3', 'test_moment_matching.R:15:3'
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_plots.R:103:5'): pagination of plots works as expected ─────── powerscale_plot_quantities(ps, variables_per_page = Inf) has length 1, not length 11.
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 91 ] Error: Test failures Execution halted ```
probably
- Version: 1.1.0
- GitHub: https://github.com/tidymodels/probably
- Source code: https://github.com/cran/probably
- Date/Publication: 2025-05-21 13:30:02 UTC
- Number of recursive dependencies: 129
Run
revdepcheck::cloud_details(, "probably")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...expectedis a list ── Failure ('test-cal-plot.R:256:3'): Binary logistic functions work with group argument ── res$labels (actual) not equal to list(x = "Probability", y = "Predicted Event Rate") (expected`).actualis an S7 object of classexpectedis a list[ FAIL 2 | WARN 0 | SKIP 84 | PASS 549 ] Error: Test failures Execution halted ```
processmapR
- Version: 0.5.6
- GitHub: https://github.com/bupaverse/processmapr
- Source code: https://github.com/cran/processmapR
- Date/Publication: 2024-12-03 12:50:02 UTC
- Number of recursive dependencies: 114
Run
revdepcheck::cloud_details(, "processmapR")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(processmapR)
Attaching package: 'processmapR'
The following object is masked from 'package:stats':
... 10. └─processmapR:::return_plotly(p, plotly) 11. ├─plotly::ggplotly(p) 12. └─plotly:::ggplotly.ggplot(p) 13. └─plotly::gg2list(...) ── Failure ('test_trace_explorer.R:240:3'): test trace_explorer on eventlog with param
plotly──chartinherits from 'ggplot2::ggplot'/'ggplot'/'ggplot2::gg'/'S7_object'/'gg' not 'plotly'.[ FAIL 6 | WARN 0 | SKIP 11 | PASS 105 ] Error: Test failures Execution halted ```
psborrow
- Version: 0.2.2
- GitHub: NA
- Source code: https://github.com/cran/psborrow
- Date/Publication: 2025-02-19 13:40:02 UTC
- Number of recursive dependencies: 103
Run
revdepcheck::cloud_details(, "psborrow")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(psborrow) > > test_check("psborrow") Input all is found in pred. Any other input is disregarded. [ FAIL 20 | WARN 0 | SKIP 1 | PASS 134 ]
...
expected: "gg" ── Failure ('test-plots.R:126:5'): Ensure output is producing a ggplot2 object with appropriate parameters ── p1$labels$yintercept (actual) not equal to "ref" (expected).actualis NULLexpectedis a character vector ('ref')[ FAIL 20 | WARN 0 | SKIP 1 | PASS 134 ] Error: Test failures Execution halted ```
-
checking whether package ‘psborrow’ can be installed ... WARNING
Found the following significant warnings: Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. See ‘/tmp/workdir/psborrow/new/psborrow.Rcheck/00install.out’ for details.
psc
- Version: 1.3.0
- GitHub: https://github.com/richJJackson/psc
- Source code: https://github.com/cran/psc
- Date/Publication: 2025-05-29 15:10:02 UTC
- Number of recursive dependencies: 190
Run
revdepcheck::cloud_details(, "psc")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘psc-vignette.Rmd’ using rmarkdown
Quitting from psc-vignette.Rmd:176-178 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'psc-vignette.Rmd' failed with diagnostics: ... ℹ In index: 1. Caused by error: ! Can't find method for
build_ggplot(S3<gg/ggplot>). --- failed re-building ‘psc-vignette.Rmd’SUMMARY: processing the following file failed: ‘psc-vignette.Rmd’
Error: Vignette re-building failed. Execution halted ```
pscore
- Version: 0.4.0
- GitHub: https://github.com/JWiley/score-project
- Source code: https://github.com/cran/pscore
- Date/Publication: 2022-05-13 22:30:02 UTC
- Number of recursive dependencies: 156
Run
revdepcheck::cloud_details(, "pscore")for more infoNewly broken
- checking whether package ‘pscore’ can be installed ... WARNING
Found the following significant warnings: Warning: `aes_string()` was deprecated in ggplot2 3.0.0. See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details.
pubh
- Version: 2.0.0
- GitHub: https://github.com/josie-athens/pubh
- Source code: https://github.com/cran/pubh
- Date/Publication: 2024-10-08 05:00:03 UTC
- Number of recursive dependencies: 158
Run
revdepcheck::cloud_details(, "pubh")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘pubh-Ex.R’ failed The error most likely occurred in:
Name: axis_labs
Title: Apply labels from variables to axis-labels in plots.
Aliases: axis_labs
** Examples
data(kfm, package = "ISwR") ... kfm |> + gf_point(weight ~ dl.milk) |> + gf_lm(col = 2, interval = "confidence", col = 2) |> + axis_labs() Warning in rep(yes, length.out = len) : 'x' is NULL so the result will be NULL Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : replacement has length zero Calls: axis_labs -> ifelse Execution halted ```
qad
- Version: 1.0.4
- GitHub: https://github.com/griefl/qad
- Source code: https://github.com/cran/qad
- Date/Publication: 2022-12-14 16:50:02 UTC
- Number of recursive dependencies: 92
Run
revdepcheck::cloud_details(, "qad")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(qad) > > test_check("qad") Intervalls for the variable x2 Interval lowerBound upperBound 1 I1 1 4 ...expected[2:2]: "ggplot" ── Failure ('test-utilityfunctions.R:33:3'): plot_density ────────────────────── class(plot_density(fit$mass_matrix)) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) ECBC.Rd:39: Lost braces; missing escapes or markup? 39 | Let (u_i,v_i) := (F_n(x_i),G_n(y_i)) be the pseudo-observations for i in \{1,\ldots,n\} and (u_1',v_1'),\ldots, (u_m',v_m') the distinct pairs of pseudo-observations with m leq n. Moreover set S_1:=\{0, u_1, \ldots, u_{m_1}\} and S_2:=\{0, v_1,\ldots, v_{m_2}\} and define the quantities t_i,r_i and s_i for i=1,\ldots, m by | ^ checkRd: (-1) ECBC.Rd:39: Lost braces; missing escapes or markup? 39 | Let (u_i,v_i) := (F_n(x_i),G_n(y_i)) be the pseudo-observations for i in \{1,\ldots,n\} and (u_1',v_1'),\ldots, (u_m',v_m') the distinct pairs of pseudo-observations with m leq n. Moreover set S_1:=\{0, u_1, \ldots, u_{m_1}\} and S_2:=\{0, v_1,\ldots, v_{m_2}\} and define the quantities t_i,r_i and s_i for i=1,\ldots, m by | ^ checkRd: (-1) ECBC.Rd:49: Lost braces; missing escapes or markup? 49 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. | ^ checkRd: (-1) ECBC.Rd:49: Lost braces; missing escapes or markup? ... | ^ checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup? 52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. | ^ checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup? 52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. | ^ checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup? 52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. | ^
qdap
- Version: 2.4.6
- GitHub: https://github.com/trinker/qdap
- Source code: https://github.com/cran/qdap
- Date/Publication: 2023-05-11 06:10:02 UTC
- Number of recursive dependencies: 94
Run
revdepcheck::cloud_details(, "qdap")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("qdap") Loading required package: qdapDictionaries Loading required package: qdapRegex Loading required package: qdapTools Loading required package: RColorBrewer
... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-dispersion_plot.R:6:5'): dispersion_plot outputs a ggplot object ── all(class(m) == c("gg", "ggplot")) is not TRUE
actual: FALSEexpected: TRUE[ FAIL 1 | WARN 3 | SKIP 0 | PASS 217 ] Error: Test failures Execution halted ```
In both
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checking installed package size ... NOTE
installed size is 6.1Mb sub-directories of 1Mb or more: R 1.5Mb data 2.0Mb help 1.5Mb -
checking Rd files ... NOTE
checkRd: (-1) check_text.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly ... checkRd: (-1) word_stats.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly -
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘gplots’
qgcompint
- Version: 1.0.0
- GitHub: https://github.com/alexpkeil1/qgcompint
- Source code: https://github.com/cran/qgcompint
- Date/Publication: 2025-03-12 16:40:02 UTC
- Number of recursive dependencies: 155
Run
revdepcheck::cloud_details(, "qgcompint")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘qgcompint-Ex.R’ failed The error most likely occurred in:
Name: plot.qgcompemmfit
Title: Default plotting method for a qgcompemmfit object
Aliases: plot.qgcompemmfit
** Examples
set.seed(50) ... pp1 = plot(qfit4, emmval=1, suppressprint=TRUE) pp2 = plot(qfit4, emmval=2, suppressprint=TRUE) pp1 + theme_linedraw() # can use with other ggplot functions
overlay (fussy to work with)
ppom <- ggplot_build(pp0 + pp1[2] + pp2[[2]] + scale_color_discrete(guide="none"))
ppom <- ggplot_build(pp0ee + pp1ee[2] + pp2ee[[2]] + scale_color_discrete(guide="none")) Error in S7::prop(x, "meta")[[i]] : subscript out of bounds Calls: ggplot_build -> [[ -> [[.ggplot2::gg Execution halted ```
qicharts2
- Version: 0.8.0
- GitHub: https://github.com/anhoej/qicharts2
- Source code: https://github.com/cran/qicharts2
- Date/Publication: 2025-05-15 08:00:02 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "qicharts2")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘qicharts2-Ex.R’ failed The error most likely occurred in:
Name: bchart
Title: Bernoulli CUSUM chart for binary data (EXPERIMENTAL)
Aliases: bchart
** Examples
Generate 1000 random successes and failures with success rate = 0.02
... ℹ Please use tidy evaluation idioms with
aes()ℹ The deprecated feature was likely used in the qicharts2 package. Please report the issue to the authors. Warning: Usingsizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ℹ The deprecated feature was likely used in the qicharts2 package. Please report the issue to the authors. Error: object is invalid: - every label must be named. Execution halted ```
quantities
- Version: 0.2.3
- GitHub: https://github.com/r-quantities/quantities
- Source code: https://github.com/cran/quantities
- Date/Publication: 2025-01-18 21:20:02 UTC
- Number of recursive dependencies: 72
Run
revdepcheck::cloud_details(, "quantities")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown
quickPlot
- Version: 1.0.2
- GitHub: https://github.com/PredictiveEcology/quickPlot
- Source code: https://github.com/cran/quickPlot
- Date/Publication: 2023-07-02 05:20:02 UTC
- Number of recursive dependencies: 84
Run
revdepcheck::cloud_details(, "quickPlot")for more infoNewly broken
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checking tests ... ERROR
Running ‘test-all.R’ Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > test_check("quickPlot") Loading required package: quickPlot Error in pgmatrix(grobToPlot, col, real, size, minv, maxv, legend, legendText, : object 'nrowLegText' not found Error in pgmatrix(grobToPlot, col, real, size, minv, maxv, legend, legendText, : object 'nrowLegText' not found ... • Plot/test46.png • Plot/test47.png • Plot/test5.png • Plot/test50.png • Plot/test6.png • Plot/test7.png • Plot/test8.png • Plot/test9.png Error: Test failures Execution halted -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘iii-plotting.Rmd’ using rmarkdown
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘fastshp’
quickReg
- Version: 1.5.0
- GitHub: NA
- Source code: https://github.com/cran/quickReg
- Date/Publication: 2017-09-28 06:41:12 UTC
- Number of recursive dependencies: 71
Run
revdepcheck::cloud_details(, "quickReg")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘quickReg.Rmd’ using rmarkdown
Quitting from quickReg.Rmd:130-162 [plot] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! object is invalid: - every label must be named.
... Error: processing vignette 'quickReg.Rmd' failed with diagnostics: object is invalid: - every label must be named. --- failed re-building ‘quickReg.Rmd’
SUMMARY: processing the following file failed: ‘quickReg.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
-
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘psych’ All declared Imports should be used. -
checking Rd files ... NOTE
checkRd: (-1) display_table.Rd:37: Lost braces; missing escapes or markup? 37 | \item{normtest}{A character indicating test of normality, the default method is \code{\link{shapiro.test}} when sample size no more than 5000, otherwise \code{\link[nortest]{lillie.test}} {Kolmogorov-Smirnov} is used, see package \strong{nortest} for more methods.Use 'shapiro.test', 'lillie.test', 'ad.test', etc to specify methods.} | ^ -
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘PredictABEL’
R4GoodPersonalFinances
- Version: 1.0.0
- GitHub: https://github.com/R4GoodAcademy/R4GoodPersonalFinances
- Source code: https://github.com/cran/R4GoodPersonalFinances
- Date/Publication: 2025-06-04 11:00:09 UTC
- Number of recursive dependencies: 107
Run
revdepcheck::cloud_details(, "R4GoodPersonalFinances")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘R4GoodPersonalFinances-Ex.R’ failed The error most likely occurred in:
Name: plot_retirement_ruin
Title: Plotting retirement ruin
Aliases: plot_retirement_ruin
** Examples
plot_retirement_ruin( ... + portfolio_return_mean = 0.034, + portfolio_return_sd = 0.15, + age = 65, + gompertz_mode = 88, + gompertz_dispersion = 10, + portfolio_value = 1000000, + monthly_spendings = 3000 + ) Error:
objectmust be an , not a S3 Execution halted ```
Radviz
- Version: 0.9.4
- GitHub: https://github.com/yannabraham/Radviz
- Source code: https://github.com/cran/Radviz
- Date/Publication: 2025-05-09 06:30:02 UTC
- Number of recursive dependencies: 61
Run
revdepcheck::cloud_details(, "Radviz")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘Radviz-Ex.R’ failed The error most likely occurred in:
Name: Radviz-package
Title: Radviz: Project Multidimensional Data in 2D Space
Aliases: Radviz Radviz-package
Keywords: internal
** Examples
... Warning:
aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the Radviz package. Please report the issue at https://github.com/yannabraham/Radviz/issues. plot(rv,anchors.only=FALSE) Error in plot.radviz(rv, anchors.only = FALSE) : 'language' object cannot be coerced to type 'double' Calls: plot -> plot.radviz Execution halted ``` -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘multivariate_analysis.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 6.6Mb sub-directories of 1Mb or more: doc 3.9Mb libs 2.5Mb
RamanMP
- Version: 1.0
- GitHub: NA
- Source code: https://github.com/cran/RamanMP
- Date/Publication: 2021-07-09 08:10:04 UTC
- Number of recursive dependencies: 59
Run
revdepcheck::cloud_details(, "RamanMP")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘RamanMP-Ex.R’ failed The error most likely occurred in:
Name: peak.finder
Title: Peaks identification
Aliases: peak.finder
Keywords: peaks
** Examples
data("MPdatabase") peak.data<-peak.finder(MPdatabase[,c(1,7)], threshold = 500, m=7) Error: object properties are invalid: - @size must be , , or , not Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 8.1Mb sub-directories of 1Mb or more: data 8.0Mb
randomForestExplainer
- Version: 0.10.1
- GitHub: https://github.com/ModelOriented/randomForestExplainer
- Source code: https://github.com/cran/randomForestExplainer
- Date/Publication: 2020-07-11 20:30:02 UTC
- Number of recursive dependencies: 89
Run
revdepcheck::cloud_details(, "randomForestExplainer")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘randomForestExplainer-Ex.R’ failed The error most likely occurred in:
Name: plot_importance_ggpairs
Title: Plot importance measures with ggpairs
Aliases: plot_importance_ggpairs
** Examples
forest <- randomForest::randomForest(Species ~ ., data = iris, localImp = TRUE, ntree = 200) frame <- measure_importance(forest, measures = c("mean_min_depth", "times_a_root")) plot_importance_ggpairs(frame, measures = c("mean_min_depth", "times_a_root")) Error in
+.gg(e1, item) : 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character' Calls: plot_importance_ggpairs -> +.gg -> add_list_to_ggmatrix -> +.gg Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(randomForestExplainer) > > test_check("randomForestExplainer") [ FAIL 12 | WARN 71 | SKIP 0 | PASS 49 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... Backtrace: ▆ 1. └─randomForestExplainer::plot_importance_rankings(ranger_s) at test_ranger.R:185:3 2. └─GGally:::
+.gg(plot, ggtitle(main)) 3. └─GGally:::add_list_to_ggmatrix(e1, e2) 4. └─GGally:::+.gg(e1, item)[ FAIL 12 | WARN 71 | SKIP 0 | PASS 49 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘randomForestExplainer.Rmd’ using rmarkdown
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
rassta
- Version: 1.0.6
- GitHub: https://github.com/bafuentes/rassta
- Source code: https://github.com/cran/rassta
- Date/Publication: 2024-08-19 06:20:13 UTC
- Number of recursive dependencies: 105
Run
revdepcheck::cloud_details(, "rassta")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘rassta-Ex.R’ failed The error most likely occurred in:
Name: select_functions
Title: Select Constrained Univariate Distribution Functions
Aliases: select_functions
** Examples
require(terra) ... tvars <- terra::rast(tf)
Single-layer SpatRaster of topographic classification units
5 classification units
tcf <- list.files(path = p, pattern = "topography.tif", full.names = TRUE) tcu <- terra::rast(tcf)
Automatic selection of distribution functions
tdif <- select_functions(cu.rast = tcu, var.rast = tvars, fun = mean) Error in pm[[2]] : subscript out of bounds Calls: select_functions -> -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("rassta")
- }
Attaching package: 'rassta'
... test_select_functions.R....... 0 tests test_select_functions.R....... 0 tests test_select_functions.R....... 0 tests test_select_functions.R....... 0 tests test_select_functions.R....... 0 tests test_select_functions.R....... 0 tests test_select_functions.R....... 0 tests test_select_functions.R....... 0 tests Error in pm[[2]] : subscript out of bounds Calls: ... select_functions -> -> ggplotly.ggplot -> gg2list Execution halted ```
rasterdiv
- Version: 0.3.6
- GitHub: https://github.com/mattmar/rasterdiv
- Source code: https://github.com/cran/rasterdiv
- Date/Publication: 2024-11-06 11:20:03 UTC
- Number of recursive dependencies: 99
Run
revdepcheck::cloud_details(, "rasterdiv")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘rasterdiv_01_Basics.Rmd’ using rmarkdown
rater
- Version: 1.3.1
- GitHub: https://github.com/jeffreypullin/rater
- Source code: https://github.com/cran/rater
- Date/Publication: 2023-09-11 17:40:02 UTC
- Number of recursive dependencies: 88
Run
revdepcheck::cloud_details(, "rater")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rater)
- The rater package uses
Stanto fit bayesian models. - If you are working on a local, multicore CPU with excess RAM please call:
- options(mc.cores = parallel::detectCores())
- This will allow Stan to run inference on multiple cores in parallel.
... ── Failure ('test_plotting.R:65:3'): plot_theta_points output has correct type ── get_geoms(ds_plot) (
actual) not equal to c("GeomPoint", "GeomErrorbar") (expected).
names(actual)is a character vector ('geom_point', 'geom_errorbar')names(expected)is absent[ FAIL 4 | WARN 0 | SKIP 6 | PASS 375 ] Error: Test failures In addition: There were 12 warnings (use warnings() to see them) Execution halted ```
- The rater package uses
In both
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checking installed package size ... NOTE
installed size is 124.5Mb sub-directories of 1Mb or more: libs 123.7Mb -
checking Rd files ... NOTE
checkRd: (-1) as_mcmc.list.Rd:5: Lost braces; missing escapes or markup? 5 | \title{Convert a rater_fit object to a {coda} \code{mcmc.list} object.} | ^ checkRd: (-1) as_mcmc.list.Rd:16: Lost braces; missing escapes or markup? 16 | Convert a rater_fit object to a {coda} \code{mcmc.list} object. | ^ checkRd: (-1) as_mcmc.list.Rd:13: Lost braces; missing escapes or markup? 13 | A {coda} mcmc.list object. | ^ -
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
ratlas
- Version: 0.1.0
- GitHub: https://github.com/atlas-aai/ratlas
- Source code: https://github.com/cran/ratlas
- Date/Publication: 2024-11-06 16:20:02 UTC
- Number of recursive dependencies: 136
Run
revdepcheck::cloud_details(, "ratlas")for more infoNewly broken
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checking tests ... ERROR
Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ratlas) NOTE: Either Arial Narrow or Montserrat fonts are required to use these themes. Please use ratlas::import_montserrat() to install Montserrat and if Arial Narrow is not on your system, please see https://bit.ly/arialnarrow > ... • okabeito-color-scales/okabeito-fill.svg • okabeito-color-scales/okabeito-lighten.svg • stat-bin/bins30-bound0.svg • stat-bin/no-color-hist.svg • stat-bin/one-bin.svg • stat-bin/trimmed-hist-bound0.svg • stat-bin/trimmed-hist-center0.svg • themes/theme-atlas.svg Error: Test failures Execution halted -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘plotting.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.1Mb sub-directories of 1Mb or more: doc 2.6Mb rstudio 1.6Mb
rbioacc
- Version: 1.2.1
- GitHub: NA
- Source code: https://github.com/cran/rbioacc
- Date/Publication: 2024-02-27 01:40:02 UTC
- Number of recursive dependencies: 96
Run
revdepcheck::cloud_details(, "rbioacc")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rbioacc) > > test_check("rbioacc")
SAMPLING FOR MODEL 'TK' NOW (CHAIN 1). Chain 1: ...
expected: TRUE ── Failure ('test-ppc.R:16:5'): plot ppc ─────────────────────────────────────── all(class(ppc(fit_MGSG)) == c("gg", "ggplot")) is not TRUEactual: FALSEexpected: TRUE[ FAIL 20 | WARN 103 | SKIP 9 | PASS 60 ] Error: Test failures Execution halted ```
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checking installed package size ... NOTE
installed size is 94.5Mb sub-directories of 1Mb or more: libs 93.8Mb -
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
rbiom
- Version: 2.2.0
- GitHub: https://github.com/cmmr/rbiom
- Source code: https://github.com/cran/rbiom
- Date/Publication: 2025-04-04 20:20:02 UTC
- Number of recursive dependencies: 106
Run
revdepcheck::cloud_details(, "rbiom")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘rbiom-Ex.R’ failed The error most likely occurred in:
Name: bdiv_heatmap
Title: Display beta diversities in an all vs all grid.
Aliases: bdiv_heatmap
** Examples
library(rbiom)... 18. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 20. │ └─base::withCallingHandlers(...) 21. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 22. └─l$layer_data(plot@data) 23. └─ggplot2::layer_data(..., self = self) 24. └─ggplot2:::unrowname(data) 25. └─cli::cli_abort("Can only remove rownames from {.cls data.frame} and {.cls matrix} objects.") 26. └─rlang::abort(...) Execution halted ```
reda
- Version: 0.5.4
- GitHub: https://github.com/wenjie2wang/reda
- Source code: https://github.com/cran/reda
- Date/Publication: 2022-07-08 21:50:02 UTC
- Number of recursive dependencies: 50
Run
revdepcheck::cloud_details(, "reda")for more infoNewly broken
- checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE) &&
- utils::packageVersion("tinytest") >= "1.1.0") {
-
Set a seed to make the test deterministic
- set.seed(808)
- tinytest::test_package("reda", ncpu = NULL, ... call| --> lty = 1:4, col = 1:4)), c("gg", "ggplot")) diff| Lengths (2, 5) differ (string compare on first 2) diff| 1 string mismatch ----- FAILED[data]: test_rateReg.R<152--152> call| expect_equivalent(class(plot(mcf_splineFit)), c("gg", "ggplot")) diff| Lengths (2, 5) differ (string compare on first 2) diff| 1 string mismatch Error: 8 out of 191 tests failed In addition: There were 16 warnings (use warnings() to see them) Execution halted ```
In both
-
checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential -
checking installed package size ... NOTE
installed size is 8.0Mb sub-directories of 1Mb or more: doc 3.3Mb libs 4.0Mb -
checking Rd files ... NOTE
checkRd: (-1) simEvent.Rd:112: Lost braces; missing escapes or markup? 112 | and another argument named {zCoef} for covariate coefficient vector. | ^
regtomean
- Version: 1.2
- GitHub: NA
- Source code: https://github.com/cran/regtomean
- Date/Publication: 2024-12-17 15:00:02 UTC
- Number of recursive dependencies: 83
Run
revdepcheck::cloud_details(, "regtomean")for more infoNewly broken
- checking whether package ‘regtomean’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘regtomean’ See ‘/tmp/workdir/regtomean/new/regtomean.Rcheck/00install.out’ for details.
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘plyr’
rempsyc
- Version: 0.1.9
- GitHub: https://github.com/rempsyc/rempsyc
- Source code: https://github.com/cran/rempsyc
- Date/Publication: 2025-02-01 23:40:05 UTC
- Number of recursive dependencies: 175
Run
revdepcheck::cloud_details(, "rempsyc")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘rempsyc-Ex.R’ failed The error most likely occurred in:
Name: nice_normality
Title: Easy normality check per group
Aliases: nice_normality
Keywords: QQ density distribution normality plots
** Examples
... 33. │ └─ggplot2 (local) FUN(X[[i]], ...) 34. │ └─self$draw_group(group, panel_params, coord, ...) 35. │ └─ggplot2 (local) draw_group(...) 36. │ └─ggplot2 (local) draw_group(..., self = self) 37. └─base::.handleSimpleError(...) 38. └─rlang (local) h(simpleError(msg, call)) 39. └─handlers[1L] 40. └─cli::cli_abort(...) 41. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rempsyc) Suggested APA citation: Thériault, R. (2023). rempsyc: Convenience functions for psychology. Journal of Open Source Software, 8(87), 5466. https://doi.org/10.21105/joss.05466 > > test_check("rempsyc") [ FAIL 2 | WARN 2 | SKIP 20 | PASS 44 ] ...
- │ └─ggplot2 (local) draw_group(..., self = self)
- └─base::.handleSimpleError(...)
- └─rlang (local) h(simpleError(msg, call))
- └─handlers[1L]
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 2 | WARN 2 | SKIP 20 | PASS 44 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘assumptions.Rmd’ using rmarkdown
Quitting from assumptions.Rmd:134-140 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'assumptions.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 1st layer. Caused by error in
check_linewidth(): ! could not find function "check_linewidth" --- failed re-building ‘assumptions.Rmd’--- re-building ‘contrasts.Rmd’ using rmarkdown ```
RevGadgets
- Version: 1.2.1
- GitHub: https://github.com/revbayes/RevGadgets
- Source code: https://github.com/cran/RevGadgets
- Date/Publication: 2023-11-29 20:30:02 UTC
- Number of recursive dependencies: 131
Run
revdepcheck::cloud_details(, "RevGadgets")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(RevGadgets) > > test_check("RevGadgets")
| | | 0%... Backtrace: ▆ 1. ├─RevGadgets::plotFBDTree(...) at test_plotFBDTree.R:12:3 2. │ └─RevGadgets:::plotTreeFull(...) 3. └─base::loadNamespace(x) 4. └─base (local) runHook(".onLoad", env, package.lib, package)
[ FAIL 1 | WARN 11 | SKIP 0 | PASS 138 ] Error: Test failures Execution halted ```
rifreg
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/rifreg
- Date/Publication: 2024-05-01 18:42:07 UTC
- Number of recursive dependencies: 79
Run
revdepcheck::cloud_details(, "rifreg")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rifreg) Loading required package: ggplot2 > > test_check("rifreg") Bootstrapping Standard Errors...
...
expected[2:2]: "ggplot" ── Failure ('test-plot.R:190:3'): Generic plot method generates a plot for RIF of interquantile ratio ── class(rifreg_plot) (actual) not equal to c("gg", "ggplot") (expected).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 10 | WARN 3525 | SKIP 0 | PASS 66 ] Error: Test failures Execution halted ```
rmweather
- Version: 0.2.62
- GitHub: https://github.com/skgrange/rmweather
- Source code: https://github.com/cran/rmweather
- Date/Publication: 2025-02-21 00:20:02 UTC
- Number of recursive dependencies: 83
Run
revdepcheck::cloud_details(, "rmweather")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
... ── Failure ('test_02_rmw_functions.R:83:3'): Test training function ──────────── class(rmw_plot_importance(df_importance)) not identical to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test_02_rmw_functions.R:90:3'): Test training function ──────────── class(plot_test) not identical to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 40 ] Error: Test failures Execution halted ```
RNAseqQC
- Version: 0.2.1
- GitHub: https://github.com/frederikziebell/RNAseqQC
- Source code: https://github.com/cran/RNAseqQC
- Date/Publication: 2024-07-15 14:40:02 UTC
- Number of recursive dependencies: 159
Run
revdepcheck::cloud_details(, "RNAseqQC")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘data.Rmd’ using rmarkdown --- finished re-building ‘data.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown ```
In both
- checking installed package size ... NOTE
installed size is 7.0Mb sub-directories of 1Mb or more: data 4.5Mb doc 2.3Mb
roahd
- Version: 1.4.3
- GitHub: https://github.com/astamm/roahd
- Source code: https://github.com/cran/roahd
- Date/Publication: 2021-11-04 00:10:02 UTC
- Number of recursive dependencies: 84
Run
revdepcheck::cloud_details(, "roahd")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘roahd-Ex.R’ failed The error most likely occurred in:
Name: plot.depthgram
Title: Specialized method to plot 'depthgram' objects
Aliases: plot.depthgram
** Examples
N <- 50 ... + N, + centerline = sin(2 * pi * grid), + Cov = Cov + ) names <- paste0("id_", 1:nrow(Data[[1]])) DG <- depthgram(Data, marginal_outliers = TRUE, ids = names) plot(DG) Error in pm[[2]] : subscript out of bounds Calls: plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
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checking installed package size ... NOTE
installed size is 7.4Mb sub-directories of 1Mb or more: data 5.0Mb doc 1.7Mb -
checking Rd files ... NOTE
checkRd: (-1) fData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fData.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fData.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fData.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mfData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mfData.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mfData.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mfData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mfData.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly ... checkRd: (-1) outliergram.Rd:49-51: Lost braces in \itemize; meant \describe ? checkRd: (-1) outliergram.Rd:52-54: Lost braces in \itemize; meant \describe ? checkRd: (-1) outliergram.Rd:55-58: Lost braces in \itemize; meant \describe ? checkRd: (-1) outliergram.Rd:59-62: Lost braces in \itemize; meant \describe ? checkRd: (-1) outliergram.Rd:63-65: Lost braces in \itemize; meant \describe ? checkRd: (-1) outliergram.Rd:66-69: Lost braces in \itemize; meant \describe ? checkRd: (-1) outliergram.Rd:70-71: Lost braces in \itemize; meant \describe ? checkRd: (-1) outliergram.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) outliergram.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) outliergram.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
robCompositions
- Version: 2.4.1
- GitHub: NA
- Source code: https://github.com/cran/robCompositions
- Date/Publication: 2023-08-25 15:30:06 UTC
- Number of recursive dependencies: 139
Run
revdepcheck::cloud_details(, "robCompositions")for more infoNewly broken
- checking whether package ‘robCompositions’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘robCompositions’ See ‘/tmp/workdir/robCompositions/new/robCompositions.Rcheck/00install.out’ for details.
In both
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checking re-building of vignette outputs ... WARNING
`` Error(s) in re-building vignettes: --- re-building ‘imputation.Rnw’ using knitr Error: processing vignette 'imputation.Rnw' failed with diagnostics: Running 'texi2dvi' on 'imputation.tex' failed. LaTeX errors: ! LaTeX Error: Filescrartcl.cls' not found.Type X to quit or to proceed, or enter new name. (Default extension: cls)
... l.3 \usepackage [pdftex]{hyperref}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘robCompositions-overview.Rnw’
SUMMARY: processing the following files failed: ‘imputation.Rnw’ ‘robCompositions-overview.Rnw’
Error: Vignette re-building failed. Execution halted ```
-
checking installed package size ... NOTE
installed size is 24.0Mb sub-directories of 1Mb or more: data 2.0Mb libs 20.8Mb -
checking Rd files ... NOTE
checkRd: (-1) GDPsatis.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) GDPsatis.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) GDPsatis.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) GDPsatis.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) GDPsatis.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) GDPsatis.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) GDPsatis.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) GDPsatis.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) aDist.Rd:19: Lost braces 19 | sets, or a distance matrix in case code{y} is not supplied. ... | ^ checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup? 25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.} | ^ checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup? 25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.} | ^ checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup? 25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.} | ^ -
checking data for non-ASCII characters ... NOTE
Note: found 1 marked UTF-8 string
romic
- Version: 1.1.3
- GitHub: NA
- Source code: https://github.com/cran/romic
- Date/Publication: 2023-09-21 05:40:02 UTC
- Number of recursive dependencies: 109
Run
revdepcheck::cloud_details(, "romic")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...
- │ │ └─base::withCallingHandlers(...)
- │ ├─plotly::ggplotly(heatmap_plot) %>% plotly::layout(margin = 0)
- │ ├─plotly::ggplotly(heatmap_plot)
- │ └─plotly:::ggplotly.ggplot(heatmap_plot)
- │ └─plotly::gg2list(...)
- └─plotly::layout(., margin = 0)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 66 ] Error: Test failures Execution halted ```
In both
- checking Rd files ... NOTE
checkRd: (-1) update_tidy_omic.Rd:16-17: Lost braces 16 | in \code{updated_tidy_data} (names) and the table {features, samples, | ^
roptions
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/roptions
- Date/Publication: 2020-05-11 11:10:06 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "roptions")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘roptions-Ex.R’ failed The error most likely occurred in:
Name: box.spread
Title: Box Spread Strategy Function
Aliases: box.spread
** Examples
box.spread(100, 105, 95, 110, 3.2, 2.6, 1.1, 2.4) ... 35 5.7 36 5.7 37 5.7 38 5.7 39 5.7 40 5.7 41 5.7 Error in pm[[2]] : subscript out of bounds Calls: box.spread -> print -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
rPBK
- Version: 0.2.4
- GitHub: NA
- Source code: https://github.com/cran/rPBK
- Date/Publication: 2024-02-26 17:00:02 UTC
- Number of recursive dependencies: 79
Run
revdepcheck::cloud_details(, "rPBK")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...expected`: TRUE ── Failure ('test-ppc.R:7:5'): ppc ───────────────────────────────────────────── all(class(ppcPBK_C4) == c("gg", "ggplot")) is not TRUEactual: FALSEexpected: TRUE[ FAIL 2 | WARN 0 | SKIP 0 | PASS 6 ] Error: Test failures Execution halted ```
In both
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checking whether package ‘rPBK’ can be installed ... WARNING
Found the following significant warnings: Warning: namespace ‘colorspace’ is not available and has been replaced See ‘/tmp/workdir/rPBK/new/rPBK.Rcheck/00install.out’ for details. -
checking installed package size ... NOTE
installed size is 98.4Mb sub-directories of 1Mb or more: data 1.5Mb libs 96.5Mb -
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used. -
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
rrr
- Version: 1.0.0
- GitHub: https://github.com/chrisaddy/rrr
- Source code: https://github.com/cran/rrr
- Date/Publication: 2016-12-09 15:15:55
- Number of recursive dependencies: 94
Run
revdepcheck::cloud_details(, "rrr")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘rrr-Ex.R’ failed The error most likely occurred in:
Name: residuals
Title: Reduced-Rank Regression Residuals
Aliases: residuals
** Examples
data(tobacco) ... galaxy <- as_data_frame(COMBO17) galaxy <- select(galaxy, -starts_with("e."), -Nr, -UFS:-IFD) galaxy <- na.omit(galaxy) galaxy_x <- select(galaxy, -Rmag:-chi2red) galaxy_y <- select(galaxy, Rmag:chi2red) residuals(galaxy_x, galaxy_y, type = "cva", rank = 2, k = 0.001) Error in
+.gg(e1, item) : 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character' Calls: residuals ... cva_residual_plot -> +.gg -> add_list_to_ggmatrix -> +.gg Execution halted ``` -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘rrr.Rmd’ using rmarkdown
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
RSDA
- Version: 3.2.4
- GitHub: NA
- Source code: https://github.com/cran/RSDA
- Date/Publication: 2025-06-02 19:10:02 UTC
- Number of recursive dependencies: 161
Run
revdepcheck::cloud_details(, "RSDA")for more infoNewly broken
- checking whether package ‘RSDA’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RSDA’ See ‘/tmp/workdir/RSDA/new/RSDA.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 5.8Mb sub-directories of 1Mb or more: doc 4.6Mb
RTIGER
- Version: 2.1.0
- GitHub: NA
- Source code: https://github.com/cran/RTIGER
- Date/Publication: 2023-03-29 09:20:02 UTC
- Number of recursive dependencies: 158
Run
revdepcheck::cloud_details(, "RTIGER")for more infoNewly broken
- checking whether package ‘RTIGER’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RTIGER’ See ‘/tmp/workdir/RTIGER/new/RTIGER.Rcheck/00install.out’ for details.
RVA
- Version: 0.0.5
- GitHub: https://github.com/THERMOSTATS/RVA
- Source code: https://github.com/cran/RVA
- Date/Publication: 2021-11-01 21:40:02 UTC
- Number of recursive dependencies: 208
Run
revdepcheck::cloud_details(, "RVA")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘RVA.Rmd’ using rmarkdown
In both
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checking installed package size ... NOTE
installed size is 8.8Mb sub-directories of 1Mb or more: data 7.5Mb -
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘XML’ All declared Imports should be used.
RVenn
- Version: 1.1.0
- GitHub: NA
- Source code: https://github.com/cran/RVenn
- Date/Publication: 2019-07-18 21:40:02 UTC
- Number of recursive dependencies: 72
Run
revdepcheck::cloud_details(, "RVenn")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(RVenn) > > test_check("RVenn") [ FAIL 4 | WARN 1 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... ── Failure ('test_ggvenn.R:16:3'): ggvenn: slices ────────────────────────────── class(ggvenn(v1, slice = c(2, 4))) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test_ggvenn.R:17:3'): ggvenn: slices ────────────────────────────── class(ggvenn(v1, slice = c("A", "B", "C"))) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 31 ] Error: Test failures Execution halted ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
Rwtss
- Version: 0.9.2
- GitHub: https://github.com/e-sensing/Rwtss
- Source code: https://github.com/cran/Rwtss
- Date/Publication: 2022-04-25 08:50:05 UTC
- Number of recursive dependencies: 113
Run
revdepcheck::cloud_details(, "Rwtss")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(Rwtss) Rwtss - R interface to Web Time Series Service. Loaded Rwtss v0.9.2. See ?Rwtss for help, citation("Rwtss") for use in publication. See demo(package = "Rwtss") for examples. ... Backtrace: ▆
- ├─vcr::use_cassette(...) at test_wtss.R:53:5
- │ └─cassette$call_block(...)
- └─testthat::expect_true(unname(summary(g)[1, 2]) == "gg") at test_wtss.R:60:9
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ] Error: Test failures Execution halted Ran 14/14 deferred expressions ```
In both
- checking Rd files ... NOTE
checkRd: (-1) wtss_to_ts.Rd:31: Lost braces; missing escapes or markup? 31 | This period can be either {"month", "week", "day"}, | ^ checkRd: (-1) wtss_to_ts.Rd:32: Lost braces; missing escapes or markup? 32 | {"months", "weeks", "days"} or | ^ checkRd: (-1) wtss_to_ts.Rd:33: Lost braces; missing escapes or markup? 33 | {12, 52, 365}. This function creates a new time series with the required | ^
saros
- Version: 1.5.4
- GitHub: https://github.com/NIFU-NO/saros
- Source code: https://github.com/cran/saros
- Date/Publication: 2025-06-04 12:10:06 UTC
- Number of recursive dependencies: 117
Run
revdepcheck::cloud_details(, "saros")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘saros-Ex.R’ failed The error most likely occurred in:
Name: girafe
Title: Pull global plotting settings before displaying plot
Aliases: girafe
** Examples
plot <- makeme(data = ex_survey, dep = b_1) ... 24. │ └─base::lapply(...) 25. │ └─ggplot2 (local) FUN(X[[i]], ...) 26. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 27. │ └─self$draw_panel(...) 28. └─base::.handleSimpleError(...) 29. └─rlang (local) h(simpleError(msg, call)) 30. └─handlers[1L] 31. └─cli::cli_abort(...) 32. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(saros) > > testthat::test_check("saros") Starting 2 test processes [ FAIL 1 | WARN 2 | SKIP 0 | PASS 224 ] ...
- │ └─self$draw_panel(...)
- └─base::.handleSimpleError(...)
- └─rlang (local) h(simpleError(msg, call))
- └─handlers[1L]
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 224 ] Error: Test failures Execution halted ```
scatterpie
- Version: 0.2.4
- GitHub: NA
- Source code: https://github.com/cran/scatterpie
- Date/Publication: 2024-08-28 17:20:02 UTC
- Number of recursive dependencies: 64
Run
revdepcheck::cloud_details(, "scatterpie")for more infoNewly broken
- checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.layer_scatterpie: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
scCustomize
- Version: 3.0.1
- GitHub: https://github.com/samuel-marsh/scCustomize
- Source code: https://github.com/cran/scCustomize
- Date/Publication: 2024-12-18 18:40:02 UTC
- Number of recursive dependencies: 275
Run
revdepcheck::cloud_details(, "scCustomize")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘scCustomize-Ex.R’ failed The error most likely occurred in:
Name: Plot_Median_Genes
Title: Plot Median Genes per Cell per Sample
Aliases: Plot_Median_Genes
** Examples
library(Seurat) ... 1. └─scCustomize::Plot_Median_Genes(...) 2. └─scCustomize::theme_ggprism_mod() 3. ├─... %+replace% ... 4. │ └─ggplot2::is_theme(e1) 5. │ └─S7::S7_inherits(x, class_theme) 6. └─ggprism::theme_prism(...) 7. └─parent %+replace% t 8. └─cli::cli_abort("{.code %+replace%} requires two theme objects") 9. └─rlang::abort(...) Execution halted ```
schtools
- Version: 0.4.1
- GitHub: https://github.com/SchlossLab/schtools
- Source code: https://github.com/cran/schtools
- Date/Publication: 2023-08-21 14:50:06 UTC
- Number of recursive dependencies: 116
Run
revdepcheck::cloud_details(, "schtools")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:76-94 [italic-genus] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: !
objectmust be an , not a S3Backtrace: ...
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
objectmust be an , not a S3 --- failed re-building ‘introduction.Rmd’SUMMARY: processing the following file failed: ‘introduction.Rmd’
Error: Vignette re-building failed. Execution halted ```
scoringutils
- Version: 2.1.0
- GitHub: https://github.com/epiforecasts/scoringutils
- Source code: https://github.com/cran/scoringutils
- Date/Publication: 2025-03-03 18:10:02 UTC
- Number of recursive dependencies: 82
Run
revdepcheck::cloud_details(, "scoringutils")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘scoringutils-Ex.R’ failed The error most likely occurred in:
Name: get_pit_histogram.forecast_quantile
Title: Probability integral transformation histogram
Aliases: get_pit_histogram.forecast_quantile
get_pit_histogram.forecast_sample get_pit_histogram
get_pit_histogram.default
Keywords: scoring
... library("ggplot2")
result <- get_pit_histogram(example_sample_continuous, by = "model") ggplot(result, aes(x = mid, y = density)) + + geom_col() + + facet_wrap(. ~ model) + + labs(x = "Quantile", "Density") Error: object is invalid: - every label must be named. Execution halted ```
scplot
- Version: 0.5.1
- GitHub: NA
- Source code: https://github.com/cran/scplot
- Date/Publication: 2025-03-01 13:10:03 UTC
- Number of recursive dependencies: 114
Run
revdepcheck::cloud_details(, "scplot")for more infoNewly broken
- checking whether package ‘scplot’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/scplot/new/scplot.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘scplot’ ... ** package ‘scplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. ℹ Please use the `linewidth` argument instead. ℹ The deprecated feature was likely used in the scplot package. Please report the issue to the authors. Error in `class<-`(`*tmp*`, value = "list") : cannot coerce type 'object' to vector of type 'list' Error: unable to load R code in package ‘scplot’ Execution halted ERROR: lazy loading failed for package ‘scplot’ * removing ‘/tmp/workdir/scplot/new/scplot.Rcheck/scplot’CRAN
* installing *source* package ‘scplot’ ... ** package ‘scplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scplot)SCpubr
- Version: 2.0.2
- GitHub: https://github.com/enblacar/SCpubr
- Source code: https://github.com/cran/SCpubr
- Date/Publication: 2023-10-11 09:50:02 UTC
- Number of recursive dependencies: 299
Run
revdepcheck::cloud_details(, "SCpubr")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # nolint start > library(testthat) > library(SCpubr)
── SCpubr 2.0.2 ────────────────────────────────────────────────────────────────
... - e1: - e2: Backtrace: ▆ 1. └─SCpubr::do_FeaturePlot(sample, features = "EPC1") at test-utils.R:775:5 2. └─S7:::Ops.S7_object(p, ggplot2::ggtitle(""))
[ FAIL 55 | WARN 16 | SKIP 391 | PASS 25 ] Error: Test failures Execution halted ```
scRNAstat
- Version: 0.1.1.1
- GitHub: NA
- Source code: https://github.com/cran/scRNAstat
- Date/Publication: 2025-03-08 08:58:55 UTC
- Number of recursive dependencies: 154
Run
revdepcheck::cloud_details(, "scRNAstat")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘scRNAstat-Ex.R’ failed The error most likely occurred in:
Name: basic_filter
Title: basic_filter
Aliases: basic_filter
** Examples
basic_filter(AJ064_small_sce) ... Please report the issue at https://github.com/satijalab/seurat/issues. Warning:
aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the Seurat package. Please report the issue at https://github.com/satijalab/seurat/issues. Error: Can't find method for generic&(e1, e2): - e1: - e2: Execution halted ```
In both
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checking whether package ‘scRNAstat’ can be installed ... WARNING
Found the following significant warnings: Warning: namespace ‘colorspace’ is not available and has been replaced See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details. -
checking installed package size ... NOTE
installed size is 8.1Mb sub-directories of 1Mb or more: data 8.0Mb
scrutiny
- Version: 0.5.0
- GitHub: https://github.com/lhdjung/scrutiny
- Source code: https://github.com/cran/scrutiny
- Date/Publication: 2024-09-22 08:10:02 UTC
- Number of recursive dependencies: 83
Run
revdepcheck::cloud_details(, "scrutiny")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘scrutiny-Ex.R’ failed The error most likely occurred in:
Name: debit_plot
Title: Visualize DEBIT results
Aliases: debit_plot
** Examples
Run
debit_plot()on the outputof
debit_map():pigs3 %>% + debit_map() %>% + debit_plot() Error: object properties are invalid: - @colour cannot be a decimal number, but could be an integer. - @arrow.fill cannot be a decimal number, but could be an integer. Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > > > library(testthat) > library(scrutiny) > > test_check("scrutiny") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 523 ] ...
- ├─ggplot2::theme(...)
- │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
- │ └─base::mget(args, envir = env)
- └─ggplot2::element_line(seq(0, 0.5, 0.1))
- └─S7::new_object(...)
- └─S7::validate(object, recursive = !parent_validated)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 523 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘consistency-tests-in-depth.Rmd’ using rmarkdown --- finished re-building ‘consistency-tests-in-depth.Rmd’
--- re-building ‘consistency-tests-simple.Rmd’ using rmarkdown --- finished re-building ‘consistency-tests-simple.Rmd’
--- re-building ‘debit.Rmd’ using rmarkdown
Quitting from debit.Rmd:116-124 [unnamed-chunk-8] ... - @arrow.fill cannot be a decimal number, but could be an integer. --- failed re-building ‘debit.Rmd’
--- re-building ‘devtools.Rmd’ using rmarkdown --- finished re-building ‘devtools.Rmd’
--- re-building ‘duplicates.Rmd’ using rmarkdown --- finished re-building ‘duplicates.Rmd’
--- re-building ‘grim.Rmd’ using rmarkdown ```
In both
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘janitor’
scUtils
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/scUtils
- Date/Publication: 2020-06-25 16:20:02 UTC
- Number of recursive dependencies: 48
Run
revdepcheck::cloud_details(, "scUtils")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(scUtils) > > test_check("scUtils") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plots.R:59:3'): all kinds of colnames are allowed ──────────── p$labels not equal to list(y = "Dim2", x = "Dim1", colour = "expression"). Attributes: < names for target but not for current > Attributes: < Length mismatch: comparison on first 0 components > Length mismatch: comparison on first 2 components
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ] Error: Test failures Execution halted ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
SCVA
- Version: 1.3.1
- GitHub: NA
- Source code: https://github.com/cran/SCVA
- Date/Publication: 2020-01-09 22:50:10 UTC
- Number of recursive dependencies: 77
Run
revdepcheck::cloud_details(, "SCVA")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘SCVA-Ex.R’ failed The error most likely occurred in:
Name: graphly
Title: Interactive plot of single-case data
Aliases: graphly
Keywords: Single-case design Graph
** Examples
data(AB) graphly(design = "AB", data = AB) Warning:
qplot()was deprecated in ggplot2 3.4.0. ℹ The deprecated feature was likely used in the SCVA package. Please report the issue to the authors. Error in pm[[2]] : subscript out of bounds Calls: graphly -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
SDMtune
- Version: 1.3.2
- GitHub: https://github.com/ConsBiol-unibern/SDMtune
- Source code: https://github.com/cran/SDMtune
- Date/Publication: 2024-12-16 16:50:06 UTC
- Number of recursive dependencies: 122
Run
revdepcheck::cloud_details(, "SDMtune")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(SDMtune)
_____ ____ __ ___ __ / ___/ / __ \ / |/ // /_ __ __ ____ ___ \__ \ / / / // /|_/ // __// / / // __ \ / _ \/ // // // / / // / / // // / / // / ...
expectedis a character vector ('Var2') ── Failure ('test-plotCor.R:6:3'): The plot has the correct labels and text size ── p$labels$y (actual) not equal to "Var1" (expected).actualis NULLexpectedis a character vector ('Var1')[ FAIL 2 | WARN 0 | SKIP 55 | PASS 315 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.2Mb sub-directories of 1Mb or more: R 3.0Mb libs 1.0Mb
seAMLess
- Version: 0.1.1
- GitHub: https://github.com/eonurk/seAMLess
- Source code: https://github.com/cran/seAMLess
- Date/Publication: 2024-11-11 12:50:02 UTC
- Number of recursive dependencies: 49
Run
revdepcheck::cloud_details(, "seAMLess")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘seAMLess-Ex.R’ failed The error most likely occurred in:
Name: ternaryPlot
Title: Given the immune compositions (ICs) of bulk-RNA samples, this
function creates a ternary plot similar to ALOT tube from EuroFlow
analysis and Figure 1E of our paper.
Aliases: ternaryPlot
** Examples
...
library(seAMLess)
data(minRes) ternaryPlot(minRes) Error: .onLoad failed in loadNamespace() for 'ggtern', details: call: NULL error: object properties are invalid: - @lineend must be or , not S3 Execution halted ```
sedproxy
- Version: 0.7.5
- GitHub: https://github.com/EarthSystemDiagnostics/sedproxy
- Source code: https://github.com/cran/sedproxy
- Date/Publication: 2023-02-26 10:50:02 UTC
- Number of recursive dependencies: 68
Run
revdepcheck::cloud_details(, "sedproxy")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(sedproxy) > > test_check("sedproxy") [ FAIL 1 | WARN 13 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ClimToProxyClim.R:332:3'): example from paper works ────────── class(p) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 1 | WARN 13 | SKIP 0 | PASS 36 ] Error: Test failures Execution halted ```
see
- Version: 0.11.0
- GitHub: https://github.com/easystats/see
- Source code: https://github.com/cran/see
- Date/Publication: 2025-03-11 16:20:02 UTC
- Number of recursive dependencies: 245
Run
revdepcheck::cloud_details(, "see")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘see-Ex.R’ failed The error most likely occurred in:
Name: geom_from_list
Title: Create ggplot2 geom(s) from a list
Aliases: geom_from_list geoms_from_list
** Examples
Don't show:
... 14. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 15. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 16. │ └─base::withCallingHandlers(...) 17. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 18. └─l$map_statistic(d, plot) 19. └─ggplot2 (local) map_statistic(..., self = self) 20. └─ggplot2:::check_nondata_cols(...) 21. └─cli::cli_abort(c(problem, issues, i = hint), call = NULL) 22. └─rlang::abort(...) Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # graphics engine changed in R 4.4, and so snapshots generated on > # previous R version won't work > if (getRversion() >= "4.4.0") {
- library(testthat)
- library(see)
- test_check("see") ...
- │ └─ggplot2 (local) draw_group(..., self = self)
- └─base::.handleSimpleError(...)
- └─rlang (local) h(simpleError(msg, call))
- └─handlers[1L]
- └─cli::cli_abort(...)
- └─rlang::abort(...)
[ FAIL 1 | WARN 11 | SKIP 23 | PASS 34 ] Error: Test failures Execution halted ```
seedreg
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/seedreg
- Date/Publication: 2022-07-07 21:20:02 UTC
- Number of recursive dependencies: 124
Run
revdepcheck::cloud_details(, "seedreg")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘seedreg-Ex.R’ failed The error most likely occurred in:
Name: lineplot
Title: Graph: line chart
Aliases: lineplot
** Examples
data("substrate") ... 19. │ └─ggplot2 (local) setup_params(...) 20. │ └─ggplot2:::make_summary_fun(...) 21. │ └─rlang::as_function(fun.data) 22. │ └─base::get(x, envir = env, mode = "function") 23. └─base::.handleSimpleError(...) 24. └─rlang (local) h(simpleError(msg, call)) 25. └─handlers[1L] 26. └─cli::cli_abort(...) 27. └─rlang::abort(...) Execution halted ```
seqHMM
- Version: 2.0.0
- GitHub: https://github.com/helske/seqHMM
- Source code: https://github.com/cran/seqHMM
- Date/Publication: 2025-05-17 00:10:02 UTC
- Number of recursive dependencies: 125
Run
revdepcheck::cloud_details(, "seqHMM")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘seqHMM-Ex.R’ failed The error most likely occurred in:
Name: stacked_sequence_plot
Title: Stacked Sequence Plots of Multichannel Sequences and/or Most
Probable Paths from Hidden Markov Models
Aliases: stacked_sequence_plot
** Examples
... + plots = "both", + type = "d", + legend_position = c("right", "right", "right", "none") + ) library("ggplot2") p & theme(plot.margin = unit(c(1, 1, 0, 2), "mm")) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ```
In both
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checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘seqHMM.Rnw’ using knitr
Quitting from seqHMM.Rnw:417-429 [graphicalillustrations2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Can't find method for generic
&(e1, e2): - e1: - e2: ... Can't find method for generic&(e1, e2): - e1: - e2: --- failed re-building ‘seqHMM_visualization.Rnw’SUMMARY: processing the following files failed: ‘seqHMM.Rnw’ ‘seqHMM_algorithms.Rnw’ ‘seqHMM_visualization.Rnw’
Error: Vignette re-building failed. Execution halted ```
-
checking installed package size ... NOTE
installed size is 41.6Mb sub-directories of 1Mb or more: R 1.5Mb data 1.5Mb libs 37.5Mb
Seurat
- Version: 5.3.0
- GitHub: https://github.com/satijalab/seurat
- Source code: https://github.com/cran/Seurat
- Date/Publication: 2025-04-23 22:10:02 UTC
- Number of recursive dependencies: 278
Run
revdepcheck::cloud_details(, "Seurat")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘Seurat-Ex.R’ failed The error most likely occurred in:
Name: CombinePlots
Title: Combine ggplot2-based plots into a single plot
Aliases: CombinePlots
** Examples
data("pbmc_small") ... + split.by = 'group' + ) Warning: The
slotargument ofFetchData()is deprecated as of SeuratObject 5.0.0. ℹ Please use thelayerargument instead. ℹ The deprecated feature was likely used in the Seurat package. Please report the issue at https://github.com/satijalab/seurat/issues. Error: Can't find method for generic&(e1, e2): - e1: - e2: Execution halted ```
In both
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checking installed package size ... NOTE
installed size is 16.7Mb sub-directories of 1Mb or more: R 3.5Mb help 1.5Mb libs 11.4Mb -
checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘Signac’
sglg
- Version: 0.2.2
- GitHub: NA
- Source code: https://github.com/cran/sglg
- Date/Publication: 2022-09-04 03:50:01 UTC
- Number of recursive dependencies: 92
Run
revdepcheck::cloud_details(, "sglg")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘sglg-Ex.R’ failed The error most likely occurred in:
Name: deviance_residuals
Title: Deviance Residuals for a Generalized Log-gamma Regression Model
Aliases: deviance_residuals
** Examples
Example 1
n <- 300 error <- rglg(n,0,1,1) y <- 0.5 + error fit <- glg(y~1,data=as.data.frame(y)) deviance_residuals(fit) Error in pm[[2]] : subscript out of bounds Calls: deviance_residuals ... dots2plots -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
sgsR
- Version: 1.4.5
- GitHub: https://github.com/tgoodbody/sgsR
- Source code: https://github.com/cran/sgsR
- Date/Publication: 2024-03-03 15:10:02 UTC
- Number of recursive dependencies: 119
Run
revdepcheck::cloud_details(, "sgsR")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html ...expectedis a character vector ('zq90') ── Failure ('test-utils-plot.R:19:3'): scatter messages ──────────────────────── o1$labels$x (actual) not equal to "pzabove2" (expected`).actualis NULLexpectedis a character vector ('pzabove2')[ FAIL 2 | WARN 115 | SKIP 19 | PASS 508 ] Error: Test failures Execution halted ```
shadowtext
- Version: 0.1.4
- GitHub: https://github.com/GuangchuangYu/shadowtext
- Source code: https://github.com/cran/shadowtext
- Date/Publication: 2024-07-18 07:00:01 UTC
- Number of recursive dependencies: 47
Run
revdepcheck::cloud_details(, "shadowtext")for more infoNewly broken
- checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: ‘S7’
SHAPforxgboost
- Version: 0.1.3
- GitHub: https://github.com/liuyanguu/SHAPforxgboost
- Source code: https://github.com/cran/SHAPforxgboost
- Date/Publication: 2023-05-29 17:20:07 UTC
- Number of recursive dependencies: 113
Run
revdepcheck::cloud_details(, "SHAPforxgboost")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘SHAPforxgboost-Ex.R’ failed The error most likely occurred in:
Name: shap.plot.force_plot
Title: Make the SHAP force plot
Aliases: shap.plot.force_plot
** Examples
... ℹ Please use tidy evaluation idioms with
aes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the SHAPforxgboost package. Please report the issue at https://github.com/liuyanguu/SHAPforxgboost/issues. Data has N = 150 | zoom in length is 50 at location 90.Error in upgradeUnit.default(x) : Not a unit object Calls: ... is.unit -> convertUnit -> upgradeUnit -> upgradeUnit.default Execution halted ```
shiny
- Version: 1.10.0
- GitHub: https://github.com/rstudio/shiny
- Source code: https://github.com/cran/shiny
- Date/Publication: 2024-12-14 00:10:02 UTC
- Number of recursive dependencies: 91
Run
revdepcheck::cloud_details(, "shiny")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(shiny) > > test_check("shiny") [ FAIL 96 | WARN 1 | SKIP 19 | PASS 1529 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════ ... m5$panels has length 0, not length 1. ── Failure ('test-plot-coordmap.R:464:3'): ggplot coordmap maintains discrete limits ── m5$panels[[1]]$domain$discrete_limits (
actual) not equal to list(x = c("e", "f")) (expected).actualis NULLexpectedis a list[ FAIL 96 | WARN 1 | SKIP 19 | PASS 1529 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 16.6Mb sub-directories of 1Mb or more: R 3.5Mb help 1.7Mb www 10.4Mb
shinyMixR
- Version: 0.5.0
- GitHub: NA
- Source code: https://github.com/cran/shinyMixR
- Date/Publication: 2024-11-14 16:10:03 UTC
- Number of recursive dependencies: 199
Run
revdepcheck::cloud_details(, "shinyMixR")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # see https://github.com/rstudio/shinytest2/issues/351 > options(chromote.timeout = 120) > > library(testthat) > library(shinyMixR) Loading required package: shiny Loading required package: ggplot2 ... Backtrace: ▆
- ├─base::suppressWarnings(gof_plot(res, ptype = "all", type = "xpose")) at test-gof_plot.R:10:3
- │ └─base::withCallingHandlers(...)
- └─shinyMixR::gof_plot(res, ptype = "all", type = "xpose")
- └─S7:::Ops.S7_object(...)
[ FAIL 4 | WARN 1 | SKIP 11 | PASS 28 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘getting_started.Rmd’ using rmarkdown
Quitting from getting_started.Rmd:234-237 [unnamed-chunk-18] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Can't find method for generic
&(e1, e2): - e1: - e2: ... Can't find method for generic&(e1, e2): - e1: - e2: --- failed re-building ‘getting_started.Rmd’SUMMARY: processing the following file failed: ‘getting_started.Rmd’
Error: Vignette re-building failed. Execution halted ```
shinyMobile
- Version: 2.0.1
- GitHub: https://github.com/RinteRface/shinyMobile
- Source code: https://github.com/cran/shinyMobile
- Date/Publication: 2024-10-04 17:30:02 UTC
- Number of recursive dependencies: 96
Run
revdepcheck::cloud_details(, "shinyMobile")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘shinyMobile-Ex.R’ failed The error most likely occurred in:
Name: f7SplitLayout
Title: Framework7 split layout
Aliases: f7SplitLayout
** Examples
library(shiny) ... fruits <- data.frame( + name = c("Apples", "Oranges", "Bananas", "Berries"), + value = c(44, 55, 67, 83) + )
thematic_shiny(font = "auto") Error in get(x, envir = ns, inherits = FALSE) : object 'ggplot_build.ggplot' not found Calls: thematic_shiny ... thematic_on -> ggplot_build_set -> getFromNamespace -> get Execution halted ```
simmr
- Version: 0.5.1.217
- GitHub: https://github.com/andrewcparnell/simmr
- Source code: https://github.com/cran/simmr
- Date/Publication: 2024-10-16 15:10:02 UTC
- Number of recursive dependencies: 114
Run
revdepcheck::cloud_details(, "simmr")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘advanced_plotting.Rmd’ using rmarkdown
SimNPH
- Version: 0.5.7
- GitHub: https://github.com/SimNPH/SimNPH
- Source code: https://github.com/cran/SimNPH
- Date/Publication: 2025-04-08 10:30:02 UTC
- Number of recursive dependencies: 130
Run
revdepcheck::cloud_details(, "SimNPH")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(SimNPH) Loading required package: SimDesign Loading required package: survival > > test_check("SimNPH") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 403 ] ...
- ├─withr::with_package(...) at test-shhr_gg.R:5:3
- │ └─base::force(code)
- ├─withr::with_package(...) at test-shhr_gg.R:6:5
- │ └─base::force(code)
- └─SimNPH::shhr_gg(A, B) at test-shhr_gg.R:7:7
- └─S7:::Ops.S7_object(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 403 ] Error: Test failures Execution halted ```
simplecolors
- Version: 0.1.2
- GitHub: https://github.com/rjake/simplecolors
- Source code: https://github.com/cran/simplecolors
- Date/Publication: 2023-08-31 04:40:07 UTC
- Number of recursive dependencies: 118
Run
revdepcheck::cloud_details(, "simplecolors")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(simplecolors) > > test_check("simplecolors") [ FAIL 3 | WARN 1 | SKIP 0 | PASS 22 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... y[1]: "gg" ── Failure ('test-show_colors.R:5:3'): show_colors retuns gglot ──────────────── is(x) not equal to "gg". 1/1 mismatches x[1]: "ggplot2::ggplot" y[1]: "gg"
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 22 ] Error: Test failures Execution halted ```
sjPlot
- Version: 2.8.17
- GitHub: https://github.com/strengejacke/sjPlot
- Source code: https://github.com/cran/sjPlot
- Date/Publication: 2024-11-29 11:20:03 UTC
- Number of recursive dependencies: 193
Run
revdepcheck::cloud_details(, "sjPlot")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘blackwhitefigures.Rmd’ using rmarkdown
smallsets
- Version: 2.0.0
- GitHub: https://github.com/lydialucchesi/smallsets
- Source code: https://github.com/cran/smallsets
- Date/Publication: 2023-12-05 00:00:02 UTC
- Number of recursive dependencies: 94
Run
revdepcheck::cloud_details(, "smallsets")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘smallsets-Ex.R’ failed The error most likely occurred in:
Name: Smallset_Timeline
Title: Smallset Timeline
Aliases: Smallset_Timeline
** Examples
set.seed(145)
Smallset_Timeline( + data = s_data, + code = system.file("s_data_preprocess.R", package = "smallsets") + ) Error: Can't find property @hjust Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... 9. │ └─ggplot2:::fix_theme_deprecations(elements)
- │ ├─base::
$<-(*tmp*, "hjust", value =<dbl>) - │ └─ggplot2:::
$<-.ggplot2::element(*tmp*, "hjust", value =<dbl>) - │ └─S7::
props<-(*tmp*, value =[[<-(S7::props(x), i, value)) - │ └─S7::
prop<-(*tmp*, name, check = FALSE, value = value[[name]]) - └─S7 (local)
<fn>(...)
[ FAIL 15 | WARN 0 | SKIP 0 | PASS 16 ] Error: Test failures Execution halted ```
- │ ├─base::
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘smallsets.Rmd’ using rmarkdown
Quitting from smallsets.Rmd:35-42 [timeline1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Can't find property @hjust
Backtrace: ...
Error: processing vignette 'smallsets.Rmd' failed with diagnostics: Can't find property @hjust --- failed re-building ‘smallsets.Rmd’
SUMMARY: processing the following file failed: ‘smallsets.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘gurobi’
smer
- Version: 0.0.1
- GitHub: https://github.com/lcrawlab/sme
- Source code: https://github.com/cran/smer
- Date/Publication: 2025-01-16 15:50:01 UTC
- Number of recursive dependencies: 110
Run
revdepcheck::cloud_details(, "smer")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘smer.Rmd’ using rmarkdown
In both
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checking installed package size ... NOTE
installed size is 45.7Mb sub-directories of 1Mb or more: libs 42.7Mb -
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
SOMbrero
- Version: 1.4-2
- GitHub: https://github.com/tuxette/SOMbrero
- Source code: https://github.com/cran/SOMbrero
- Date/Publication: 2024-01-25 22:10:10 UTC
- Number of recursive dependencies: 112
Run
revdepcheck::cloud_details(, "SOMbrero")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("SOMbrero") Loading required package: igraph
Attaching package: 'igraph'
The following object is masked from 'package:testthat': ... ── Failure ('test-missing.R:58:3'): All 'add' plots are produced for inputs with missing entries ── class(plot(nsom, what = "add", type = "barplot", variable = add4)) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test-missing.R:61:3'): All 'add' plots are produced for inputs with missing entries ── class(plot(nsom, what = "add", type = "boxplot", variable = add4)) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 58 ] Error: Test failures Execution halted ```
SoupX
- Version: 1.6.2
- GitHub: https://github.com/constantAmateur/SoupX
- Source code: https://github.com/cran/SoupX
- Date/Publication: 2022-11-01 14:00:03 UTC
- Number of recursive dependencies: 199
Run
revdepcheck::cloud_details(, "SoupX")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘pbmcTutorial.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 5.8Mb sub-directories of 1Mb or more: data 3.9Mb doc 1.0Mb
spacejamr
- Version: 0.2.1
- GitHub: https://github.com/dscolby/spacejamr
- Source code: https://github.com/cran/spacejamr
- Date/Publication: 2022-04-01 20:10:02 UTC
- Number of recursive dependencies: 133
Run
revdepcheck::cloud_details(, "spacejamr")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(spacejamr) > > test_check("spacejamr") Density Mean Degree Mean Closeness Mean Betweenness Largest Component Size pl 0 0 NaN 0 1 apl 0 0 NaN 0 1 ... [1] "ggraph" - "gg" [2] [2] "ggplot2::ggplot" - [3] "ggplot" - [4] "ggplot2::gg" - [5] "S7_object" - [6] "gg" - "ggplot" [3]
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 20 ] Error: Test failures Execution halted ```
spatialwarnings
- Version: 3.1.0
- GitHub: https://github.com/spatial-ews/spatialwarnings
- Source code: https://github.com/cran/spatialwarnings
- Date/Publication: 2024-09-06 14:50:02 UTC
- Number of recursive dependencies: 93
Run
revdepcheck::cloud_details(, "spatialwarnings")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > > library(spatialwarnings) Loading required package: future This is spatialwarnings 3.1.0 Use plan(multisession) to set up parallel processing > if ( require("testthat") ) {
- test_check("spatialwarnings") ... { ... } is not TRUE
actual: FALSEexpected: TRUE[ FAIL 6 | WARN 17 | SKIP 2 | PASS 161 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 8.3Mb sub-directories of 1Mb or more: data 2.0Mb libs 5.8Mb
spectralR
- Version: 0.1.3
- GitHub: https://github.com/olehprylutskyi/spectralR
- Source code: https://github.com/cran/spectralR
- Date/Publication: 2023-08-24 09:20:02 UTC
- Number of recursive dependencies: 117
Run
revdepcheck::cloud_details(, "spectralR")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("spectralR")
- }
test_get.pixel.data.R......... 1 tests [0;32mOK[0m [0;34m0.1s[0m
test_prepare.vector.data.R.... 1 tests [0;32mOK[0m ... test_prepare.vector.data.R.... 8 tests [0;32mOK[0m test_prepare.vector.data.R.... 9 tests [0;32mOK[0m test_prepare.vector.data.R.... 10 tests [0;32mOK[0m test_prepare.vector.data.R.... 11 tests [0;32mOK[0m test_prepare.vector.data.R.... 12 tests [0;32mOK[0m [0;36m79ms[0m
test_spectral.curves.plot.R... 1 tests [0;32mOK[0m Joining with
by = join_by(variable)Error in if (msg != "") { : the condition has length > 1 Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun Execution halted ```
spinifex
- Version: 0.3.8
- GitHub: https://github.com/nspyrison/spinifex
- Source code: https://github.com/cran/spinifex
- Date/Publication: 2025-01-08 22:10:02 UTC
- Number of recursive dependencies: 151
Run
revdepcheck::cloud_details(, "spinifex")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(spinifex) Loading required package: tourr -------------------------------------------------------- spinifex --- version 0.3.8 Please share bugs, suggestions, and feature requests at: ...
- │ └─base::withCallingHandlers(...)
- └─spinifex::play_tour_path(tour_path = tpath, data = dat_std, angle = 1)
- └─spinifex (local) render_type(frames = tour_df, ...)
- ├─plotly::ggplotly(p = gg, tooltip = "tooltip")
- └─plotly:::ggplotly.ggplot(p = gg, tooltip = "tooltip")
- └─plotly::gg2list(...)
[ FAIL 9 | WARN 85 | SKIP 0 | PASS 72 ] Error: Test failures Execution halted ```
sport
- Version: 0.2.1
- GitHub: https://github.com/gogonzo/sport
- Source code: https://github.com/cran/sport
- Date/Publication: 2024-01-08 23:50:02 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "sport")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > > test_check("sport") Loading required package: sport [ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_output.R:30:3'): Scale is labelled 'r' ─────────────────────── p$labels$y not identical to "r". target is NULL, current is character
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ] Error: Test failures Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 7504 marked UTF-8 strings
sportyR
- Version: 2.2.2
- GitHub: https://github.com/sportsdataverse/sportyR
- Source code: https://github.com/cran/sportyR
- Date/Publication: 2024-02-15 10:10:02 UTC
- Number of recursive dependencies: 91
Run
revdepcheck::cloud_details(, "sportyR")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(sportyR) > > test_check("sportyR") [ FAIL 28 | WARN 0 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ...
expected: "gg" ── Failure ('test-plots-and-features-volleyball.R:18:5'): geom_volleyball() can successfully transform coordinates ── class(fivb_court)[1] (actual) not equal to "gg" (expected).actual: "ggplot2::ggplot"expected: "gg"[ FAIL 28 | WARN 0 | SKIP 0 | PASS 101 ] Error: Test failures Execution halted ```
SPUTNIK
- Version: 1.4.2
- GitHub: https://github.com/paoloinglese/SPUTNIK
- Source code: https://github.com/cran/SPUTNIK
- Date/Publication: 2024-04-16 14:30:05 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "SPUTNIK")for more infoNewly broken
- checking whether package ‘SPUTNIK’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘SPUTNIK’ See ‘/tmp/workdir/SPUTNIK/new/SPUTNIK.Rcheck/00install.out’ for details.
SqueakR
- Version: 1.3.0
- GitHub: https://github.com/osimon81/SqueakR
- Source code: https://github.com/cran/SqueakR
- Date/Publication: 2022-06-28 09:20:04 UTC
- Number of recursive dependencies: 146
Run
revdepcheck::cloud_details(, "SqueakR")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘SqueakR.Rmd’ using rmarkdown
In both
- checking installed package size ... NOTE
installed size is 8.8Mb sub-directories of 1Mb or more: doc 8.2Mb
ssd4mosaic
- Version: 1.0.3
- GitHub: NA
- Source code: https://github.com/cran/ssd4mosaic
- Date/Publication: 2025-03-11 14:40:02 UTC
- Number of recursive dependencies: 83
Run
revdepcheck::cloud_details(, "ssd4mosaic")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html ... plot_cens_ci$layers has length 11, not length 7. ── Error ('test-fct_options_plots.R:8:3'): Uncensored data can be coloured by group ── Error inorder(p$layers[[1]]$data$group)`: argument 1 is not a vector Backtrace: ▆- └─base::order(p$layers[[1]]$data$group) at test-fct_options_plots.R:8:3
[ FAIL 3 | WARN 1 | SKIP 1 | PASS 66 ] Error: Test failures Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 1 marked UTF-8 string
sssc
- Version: 1.0.0
- GitHub: NA
- Source code: https://github.com/cran/sssc
- Date/Publication: 2018-06-15 11:22:54 UTC
- Number of recursive dependencies: 31
Run
revdepcheck::cloud_details(, "sssc")for more infoNewly broken
- checking whether package ‘sssc’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘sssc’ See ‘/tmp/workdir/sssc/new/sssc.Rcheck/00install.out’ for details.
starvz
- Version: 0.8.2
- GitHub: https://github.com/schnorr/starvz
- Source code: https://github.com/cran/starvz
- Date/Publication: 2024-09-08 19:00:02 UTC
- Number of recursive dependencies: 101
Run
revdepcheck::cloud_details(, "starvz")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(starvz) > > test_check("starvz") [ FAIL 1 | WARN 0 | SKIP 2 | PASS 1 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════ ... • On CRAN (2): 'test_lu.R:10:3', 'test_qr.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_lu.R:8:3'): starvz_plot works ──────────────────────────────── class(pl) not equal to c("patchwork", "gg", "ggplot"). Lengths differ: 6 is not 3
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 1 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 5.0Mb sub-directories of 1Mb or more: libs 3.9Mb
states
- Version: 0.3.2
- GitHub: https://github.com/andybega/states
- Source code: https://github.com/cran/states
- Date/Publication: 2023-09-05 12:20:02 UTC
- Number of recursive dependencies: 90
Run
revdepcheck::cloud_details(, "states")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("states")
Attaching package: 'states'
The following object is masked from 'package:testthat':
... ── Failure ('test-plot-missing.R:72:3'): plot_missing accepts all input options ── plot_missing(...) has type 'object', not 'list'. ── Failure ('test-plot-missing.R:77:3'): plot_missing accepts all input options ── plot_missing(...) has type 'object', not 'list'. ── Failure ('test-plot-missing.R:82:3'): plot_missing accepts all input options ── plot_missing(...) has type 'object', not 'list'.
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 106 ] Error: Test failures Execution halted ```
statgenGWAS
- Version: 1.0.11
- GitHub: https://github.com/Biometris/statgenGWAS
- Source code: https://github.com/cran/statgenGWAS
- Date/Publication: 2025-03-31 13:30:06 UTC
- Number of recursive dependencies: 70
Run
revdepcheck::cloud_details(, "statgenGWAS")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("statgenGWAS")
- }
test_GWAS.R................... 0 tests test_GWAS.R................... 0 tests ... ℹ Please use
linewidthinstead. ℹ The deprecated feature was likely used in the statgenGWAS package. Please report the issue at https://github.com/Biometris/statgenGWAS/issues. 2: In grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : for '← 2@3' in 'mbcsToSbcs': <- substituted for ← (U+2190) 3:aes_()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes()ℹ The deprecated feature was likely used in the statgenGWAS package. Please report the issue at https://github.com/Biometris/statgenGWAS/issues. Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 15.2Mb sub-directories of 1Mb or more: data 7.0Mb libs 7.2Mb
statgenGxE
- Version: 1.0.9
- GitHub: https://github.com/Biometris/statgenGxE
- Source code: https://github.com/cran/statgenGxE
- Date/Publication: 2024-09-18 07:10:03 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "statgenGxE")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(statgenGxE) > > test_check("statgenGxE") [ FAIL 8 | WARN 3 | SKIP 17 | PASS 440 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════ ... ── Failure ('test-plots.R:354:3'): Option colorGenoBy in scatterFit plot functions correctly ── p1$labels$colour not equal to "family". target is NULL, current is character ── Failure ('test-plots.R:405:3'): VarCov plot gives correct output types ──────
geomsnot equal to "GeomTile". names for target but not for current[ FAIL 8 | WARN 3 | SKIP 17 | PASS 440 ] Error: Test failures Execution halted ```
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘asreml’
statgenHTP
- Version: 1.0.8
- GitHub: https://github.com/Biometris/statgenHTP
- Source code: https://github.com/cran/statgenHTP
- Date/Publication: 2025-04-29 10:30:02 UTC
- Number of recursive dependencies: 131
Run
revdepcheck::cloud_details(, "statgenHTP")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("statgenHTP")
- }
test_TP.R..................... 0 tests test_TP.R..................... 0 tests ... test_detectSerieOut.R......... 4 tests [0;32mOK[0m test_detectSerieOut.R......... 5 tests [0;32mOK[0m test_detectSerieOut.R......... 6 tests [0;32mOK[0m test_detectSerieOut.R......... 7 tests [0;32mOK[0m test_detectSerieOut.R......... 8 tests [0;32mOK[0m test_detectSerieOut.R......... 9 tests [0;32mOK[0m Error in inherits(w, class) && grepl(pattern, w$message, ...) : 'length = 2' in coercion to 'logical(1)' Calls: ... eval -> expect_warning -> fun -> sapply -> lapply -> FUN In addition: There were 22 warnings (use warnings() to see them) Execution halted ```
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checking package dependencies ... NOTE
Package suggested but not available for checking: ‘asreml’ -
checking installed package size ... NOTE
installed size is 8.0Mb sub-directories of 1Mb or more: data 6.5Mb
statgenIBD
- Version: 1.0.8
- GitHub: https://github.com/Biometris/statgenIBD
- Source code: https://github.com/cran/statgenIBD
- Date/Publication: 2025-02-05 12:00:02 UTC
- Number of recursive dependencies: 58
Run
revdepcheck::cloud_details(, "statgenIBD")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("statgenIBD")
- }
test_IBDprob.R................ 0 tests test_IBDprob.R................ 0 tests ... test_IBDprob.R................ 6 tests [0;32mOK[0m test_IBDprob.R................ 7 tests [0;32mOK[0m test_IBDprob.R................ 8 tests [0;32mOK[0m test_IBDprob.R................ 9 tests [0;32mOK[0m test_IBDprob.R................ 9 tests [0;32mOK[0m test_IBDprob.R................ 10 tests [0;32mOK[0m test_IBDprob.R................ 11 tests [0;32mOK[0m test_IBDprob.R................ 12 tests [0;32mOK[0m Error in if (msg != "") { : the condition has length > 1 Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun Execution halted ```
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checking installed package size ... NOTE
installed size is 9.7Mb sub-directories of 1Mb or more: extdata 2.4Mb libs 6.4Mb -
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘statgenGWAS’ All declared Imports should be used.
statgenSTA
- Version: 1.0.14
- GitHub: https://github.com/Biometris/statgenSTA
- Source code: https://github.com/cran/statgenSTA
- Date/Publication: 2024-10-14 07:40:02 UTC
- Number of recursive dependencies: 84
Run
revdepcheck::cloud_details(, "statgenSTA")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(statgenSTA) > > test_check("statgenSTA") [ FAIL 1 | WARN 2 | SKIP 6 | PASS 777 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════ ... • {asreml} is not installed (3): 'test-STA.R:43:3', 'test-STA.R:57:3', 'test-STA.R:113:3'
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-layoutPlot.R:104:3'): plot works correctly if no trial is defined ──
plot(testTD2, plotType = "layout")produced warnings.[ FAIL 1 | WARN 2 | SKIP 6 | PASS 777 ] Error: Test failures Execution halted ```
In both
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checking package dependencies ... NOTE
Package suggested but not available for checking: ‘asreml’ -
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘mapproj’ All declared Imports should be used.
stRoke
- Version: 24.10.1
- GitHub: https://github.com/agdamsbo/stRoke
- Source code: https://github.com/cran/stRoke
- Date/Publication: 2024-10-25 06:50:01 UTC
- Number of recursive dependencies: 130
Run
revdepcheck::cloud_details(, "stRoke")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... ── Failure ('test-index_plot.R:2:3'): index_plot() works! ────────────────────── index_plot(stRoke::score[score$event == "A", ]) has type 'object', not 'list'. ── Failure ('test-index_plot.R:5:3'): index_plot() works! ────────────────────── index_plot(stRoke::score[score$event == "A", ], sub_plot = "_per") has type 'object', not 'list'. ── Failure ('test-index_plot.R:17:3'): index_plot() works! ───────────────────── index_plot(stRoke::score, sub_plot = "_per", facet.by = "event") has type 'object', not 'list'.
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 47 ] Error: Test failures Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 705 marked UTF-8 strings
Superpower
- Version: 0.2.3
- GitHub: https://github.com/arcaldwell49/Superpower
- Source code: https://github.com/cran/Superpower
- Date/Publication: 2025-05-15 07:20:02 UTC
- Number of recursive dependencies: 115
Run
revdepcheck::cloud_details(, "Superpower")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(Superpower) > > > test_check("Superpower") [1] "condition_one" "sad_1" ... y[1]: "gg" ── Failure ('test-morey.R:109:3'): No error messages ftest ───────────────────── class(test)[1] not equal to "gg". 1/1 mismatches x[1]: "ggplot2::ggplot" y[1]: "gg"
[ FAIL 2 | WARN 18 | SKIP 13 | PASS 398 ] Error: Test failures Execution halted ```
survHE
- Version: 2.0.4
- GitHub: https://github.com/giabaio/survHE
- Source code: https://github.com/cran/survHE
- Date/Publication: 2025-05-15 08:20:02 UTC
- Number of recursive dependencies: 127
Run
revdepcheck::cloud_details(, "survHE")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... ── Failure ('test-make.surv.R:20:3'): output plots don't throw an error and return ggplot2 list ── psa.plot(p.mle3) has type 'object', not 'list'. ── Failure ('test-make.surv.R:22:3'): output plots don't throw an error and return ggplot2 list ── plot(mle, add.km = TRUE) has type 'object', not 'list'. ── Failure ('test-make.surv.R:23:3'): output plots don't throw an error and return ggplot2 list ── plot(mle, add.km = TRUE, sim = 10) has type 'object', not 'list'.
[ FAIL 7 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted ```
synthpop
- Version: 1.9-1.1
- GitHub: NA
- Source code: https://github.com/cran/synthpop
- Date/Publication: 2025-06-03 05:53:06 UTC
- Number of recursive dependencies: 63
Run
revdepcheck::cloud_details(, "synthpop")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘synthpop-Ex.R’ failed The error most likely occurred in:
Name: compare.synds
Title: Compare univariate distributions of synthesised and observed
data
Aliases: compare.synds compare.data.frame compare.list
print.compare.synds
** Examples
...
synthetic data provided as a 'synds' object
compare(s1, ods, vars = "ls") Calculations done for ls
Comparing percentages observed with synthetic
Error in S7::prop(x, "meta")[[i]] : subscript out of bounds Calls: ... print.compare.synds -> print -> [[ -> [[.ggplot2::gg Execution halted ```
In both
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checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘disclosure.Rnw’ using Sweave New version of synthpop (1.9-0) with disclosure functions see disclosure.pdf for details and NEWS file for other changes
Find out more at https://www.synthpop.org.uk/ Error: processing vignette 'disclosure.Rnw' failed with diagnostics: Running 'texi2dvi' on 'disclosure.tex' failed. LaTeX errors: ! LaTeX Error: File `authblk.sty' not found. ... l.6 \usepackage {framed}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building 'utility.Rnw'
SUMMARY: processing the following files failed: ‘disclosure.Rnw’ ‘inference.Rnw’ ‘utility.Rnw’
Error: Vignette re-building failed. Execution halted ```
tabledown
- Version: 1.0.0
- GitHub: https://github.com/masiraji/tabledown
- Source code: https://github.com/cran/tabledown
- Date/Publication: 2024-05-02 13:40:03 UTC
- Number of recursive dependencies: 163
Run
revdepcheck::cloud_details(, "tabledown")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘tabledown-Ex.R’ failed The error most likely occurred in:
Name: ggreliability_plotly
Title: A Function for Creating Item Response Theory based reliability
plot based on plotly.
Aliases: ggreliability_plotly
** Examples
... Iteration: 17, Log-Lik: -5351.363, Max-Change: 0.00011 Iteration: 18, Log-Lik: -5351.363, Max-Change: 0.00054 Iteration: 19, Log-Lik: -5351.363, Max-Change: 0.00012 Iteration: 20, Log-Lik: -5351.363, Max-Change: 0.00035 Iteration: 21, Log-Lik: -5351.363, Max-Change: 0.00010
plot <- ggreliability_plotly(data, model) Error in pm[[2]] : subscript out of bounds Calls: ggreliability_plotly -> -> ggplotly.ggplot -> gg2list Execution halted ```
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- checking data for non-ASCII characters ... NOTE
Note: found 551 marked UTF-8 strings
tastypie
- Version: 0.1.1
- GitHub: https://github.com/PaoloDalena/tastypie
- Source code: https://github.com/cran/tastypie
- Date/Publication: 2023-09-06 18:00:06 UTC
- Number of recursive dependencies: 76
Run
revdepcheck::cloud_details(, "tastypie")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tastypie) $$ $$ $$ |||||| | * * * | | * * * | | * * * | ...
- S7_object
- gg Backtrace: ▆
- └─testthat::expect_match(class(b), "gg") at test-templates.R:37:3
- └─testthat:::expect_match_(...)
[ FAIL 45 | WARN 38 | SKIP 0 | PASS 74 ] Error: Test failures Execution halted ```
TcGSA
- Version: 0.12.10
- GitHub: https://github.com/sistm/TcGSA
- Source code: https://github.com/cran/TcGSA
- Date/Publication: 2022-02-28 21:40:02 UTC
- Number of recursive dependencies: 131
Run
revdepcheck::cloud_details(, "TcGSA")for more infoNewly broken
-
checking Rd cross-references ... WARNING ``` Missing link or links in Rd file 'plot1GS.Rd': ‘+.gg’
Missing link or links in Rd file 'plotFit.GS.Rd': ‘+.gg’
Missing link or links in Rd file 'plotMultipleGS.Rd': ‘+.gg’
Missing link or links in Rd file 'plotPat.1GS.Rd': ‘+.gg’
Missing link or links in Rd file 'plotSelect.GS.Rd': ‘+.gg’
See section 'Cross-references' in the 'Writing R Extensions' manual. ```
TCIU
- Version: 1.2.7
- GitHub: https://github.com/SOCR/TCIU
- Source code: https://github.com/cran/TCIU
- Date/Publication: 2024-09-15 02:40:02 UTC
- Number of recursive dependencies: 165
Run
revdepcheck::cloud_details(, "TCIU")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘TCIU-Ex.R’ failed The error most likely occurred in:
Name: fmri_image
Title: interactive graph object of the fMRI image
Aliases: fmri_image
** Examples
fmri_generate = fmri_simulate_func(dim_data = c(64, 64, 40), mask = mask) fmri_image(fmri_generate$fmri_data, option='manually', voxel_location = c(40,22,33), time = 4) Error in pm[[2]] : subscript out of bounds Calls: fmri_image ... add_trace -> add_data -> ggplotly -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown --- finished re-building ‘tciu-LT-kimesurface.Rmd’
--- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown
Quitting from tciu-fMRI-analytics.Rmd:183-185 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
pm[[2]]: ...Error: processing vignette 'tciu-fMRI-analytics.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘tciu-fMRI-analytics.Rmd’
SUMMARY: processing the following file failed: ‘tciu-fMRI-analytics.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 14.1Mb sub-directories of 1Mb or more: data 1.5Mb doc 12.0Mb
teal.widgets
- Version: 0.4.3
- GitHub: https://github.com/insightsengineering/teal.widgets
- Source code: https://github.com/cran/teal.widgets
- Date/Publication: 2025-01-31 17:50:01 UTC
- Number of recursive dependencies: 104
Run
revdepcheck::cloud_details(, "teal.widgets")for more infoNewly broken
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > pkg_name <- "teal.widgets" > library(pkg_name, character.only = TRUE) > testthat::test_check(pkg_name) [ FAIL 3 | WARN 0 | SKIP 21 | PASS 203 ]
══ Skipped tests (21) ══════════════════════════════════════════════════════════ • testing depth 3 is below current testing specification 5 (21): ... ── Failure ('test-ggplot2_args.R:267:5'): parse_ggplot2_args, when resolve_ggplot2_args priorotizes input in the order: user_plot, user_default, teal.ggplot2_args and module_plot ── deparse(parsed_all$theme, 500) not identical to "ggplot2::theme(axis.text = structure(list(), class = c(\"element_blank\", \"element\")))". 1/1 mismatches x[1]: "ggplot2::theme(axis.text = )" y[1]: "ggplot2::theme(axis.text = structure(list(), class = c(\"element_blank\", y[1]: \"element\")))"
[ FAIL 3 | WARN 0 | SKIP 21 | PASS 203 ] Error: Test failures Execution halted ```
TestGardener
- Version: 3.3.5
- GitHub: NA
- Source code: https://github.com/cran/TestGardener
- Date/Publication: 2024-09-18 17:40:02 UTC
- Number of recursive dependencies: 122
Run
revdepcheck::cloud_details(, "TestGardener")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘TestGardener-Ex.R’ failed The error most likely occurred in:
Name: Ffuns_plot
Title: Plot a selection of fit criterion F functions and their first
two derivatives.
Aliases: Ffuns_plot
** Examples
...
short SweSAT multiple choice test with 24 items and 1000 examinees
chcemat <- Quant_13B_problem_dataList$chcemat index <- Quant_13B_problem_parmList$index SfdList <- Quant_13B_problem_parmList$SfdList plotindex <- 1:3 indfine <- seq(0,100,len=101) Ffuns_plot(indfine, index, SfdList, chcemat, plotindex) Error: object is invalid: - every label must be named. Execution halted ```
thematic
- Version: 0.1.6
- GitHub: https://github.com/rstudio/thematic
- Source code: https://github.com/cran/thematic
- Date/Publication: 2024-07-29 15:50:02 UTC
- Number of recursive dependencies: 102
Run
revdepcheck::cloud_details(, "thematic")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘thematic-Ex.R’ failed The error most likely occurred in:
Name: auto_config
Title: Configure auto theming behavior
Aliases: auto_config auto_config_set auto_config_get
** Examples
old_config <- auto_config_set(auto_config("black", "white")) thematic_with_theme( + thematic_theme(), { + plot(1:10, 1:10) + }) Error in get(x, envir = ns, inherits = FALSE) : object 'ggplot_build.ggplot' not found Calls: thematic_with_theme ... -> ggplot_build_set -> getFromNamespace -> get Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(thematic) > > test_check("thematic") [ FAIL 17 | WARN 0 | SKIP 5 | PASS 13 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════ ... Backtrace: ▆ 1. └─thematic::thematic_on("black", "white", "green") at test-state.R:54:3 2. └─thematic:::ggplot_build_set() 3. └─utils::getFromNamespace("ggplot_build.ggplot", "ggplot2") 4. └─base::get(x, envir = ns, inherits = FALSE)
[ FAIL 17 | WARN 0 | SKIP 5 | PASS 13 ] Error: Test failures Execution halted ```
tidycat
- Version: 0.1.2
- GitHub: https://github.com/guyabel/tidycat
- Source code: https://github.com/cran/tidycat
- Date/Publication: 2021-08-02 04:20:01 UTC
- Number of recursive dependencies: 67
Run
revdepcheck::cloud_details(, "tidycat")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘tidycat-Ex.R’ failed The error most likely occurred in:
Name: tidy_categorical
Title: Expand broom::tidy() Outputs for Categorical Parameter Estimates
Aliases: tidy_categorical
** Examples
strip ordering in factors (currently ordered factor not supported)
... ggplot(data = d0, + mapping = aes(x = level, colour = reference, + y = estimate, ymin = conf.low, ymax = conf.high)) + + facet_row(facets = vars(variable), scales = "free_x", space = "free") + + geom_hline(yintercept = 0, linetype = "dashed") + + geom_pointrange() + + theme(axis.text.x = element_text(angle = 45, hjust = 1)) Error in space$x : $ operator is invalid for atomic vectors Calls: ... -> draw_panels -> -> init_gtable Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘intro.Rmd’ using rmarkdown
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘tidyr’ All declared Imports should be used.
tidyCDISC
- Version: 0.2.1
- GitHub: https://github.com/Biogen-Inc/tidyCDISC
- Source code: https://github.com/cran/tidyCDISC
- Date/Publication: 2023-03-16 14:20:02 UTC
- Number of recursive dependencies: 131
Run
revdepcheck::cloud_details(, "tidyCDISC")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidyCDISC) > library(shinyjs)
Attaching package: 'shinyjs'
... 6. ├─plotly::config(...) 7. │ └─plotly:::modify_list(p$x$config, args) 8. │ ├─utils::modifyList(x %||% list(), y %||% list(), ...) 9. │ │ └─base::stopifnot(is.list(x), is.list(val)) 10. │ └─x %||% list() 11. └─plotly::layout(...)
[ FAIL 1 | WARN 1 | SKIP 15 | PASS 91 ] Error: Test failures Execution halted ```
In both
- checking installed package size ... NOTE
installed size is 6.0Mb sub-directories of 1Mb or more: R 1.0Mb data 2.0Mb doc 1.8Mb
tidydr
- Version: 0.0.5
- GitHub: https://github.com/YuLab-SMU/tidydr
- Source code: https://github.com/cran/tidydr
- Date/Publication: 2023-03-08 09:20:02 UTC
- Number of recursive dependencies: 75
Run
revdepcheck::cloud_details(, "tidydr")for more infoNewly broken
- checking whether package ‘tidydr’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘tidydr’ ... ** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error in get(x, envir = ns, inherits = FALSE) : object 'len0_null' not found Error: unable to load R code in package ‘tidydr’ Execution halted ERROR: lazy loading failed for package ‘tidydr’ * removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’CRAN
* installing *source* package ‘tidydr’ ... ** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidydr)tidyEdSurvey
- Version: 0.1.3
- GitHub: NA
- Source code: https://github.com/cran/tidyEdSurvey
- Date/Publication: 2024-05-14 20:20:03 UTC
- Number of recursive dependencies: 110
Run
revdepcheck::cloud_details(, "tidyEdSurvey")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(EdSurvey) Loading required package: car Loading required package: carData Loading required package: lfactors lfactors v1.0.4
... ── Failure ('test-ggplot.R:13:3'): density plot with facets and PVs ──────────── class(p) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2 ── Failure ('test-ggplot.R:21:3'): boxplot with facets and PVs ───────────────── class(p) not equal to c("gg", "ggplot"). Lengths differ: 5 is not 2
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 10 ] Error: Test failures Execution halted ```
tidypaleo
- Version: 0.1.3
- GitHub: https://github.com/paleolimbot/tidypaleo
- Source code: https://github.com/cran/tidypaleo
- Date/Publication: 2023-01-18 08:20:03 UTC
- Number of recursive dependencies: 83
Run
revdepcheck::cloud_details(, "tidypaleo")for more infoNewly broken
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checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.rotate_facet_label_spec: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.sequential_layer_facet_spec: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
tidyposterior
- Version: 1.0.1
- GitHub: https://github.com/tidymodels/tidyposterior
- Source code: https://github.com/cran/tidyposterior
- Date/Publication: 2023-10-11 18:50:02 UTC
- Number of recursive dependencies: 176
Run
revdepcheck::cloud_details(, "tidyposterior")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidyposterior) > > test_check("tidyposterior")
Attaching package: 'rsample'
...
expected: ".upper" ── Failure ('test_perf_mod.R:288:3'): workflow sets ──────────────────────────── as.character(p_rope$labels$colour) (actual) not equal to "workflow" (expected).actual:expected: "workflow"[ FAIL 12 | WARN 32 | SKIP 5 | PASS 116 ] Error: Test failures Execution halted ```
tidysdm
- Version: 1.0.0
- GitHub: https://github.com/EvolEcolGroup/tidysdm
- Source code: https://github.com/cran/tidysdm
- Date/Publication: 2025-03-05 17:40:02 UTC
- Number of recursive dependencies: 191
Run
revdepcheck::cloud_details(, "tidysdm")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘tidysdm-Ex.R’ failed The error most likely occurred in:
Name: plot_pres_vs_bg
Title: Plot presences vs background
Aliases: plot_pres_vs_bg
** Examples
data("bradypus", package = "maxnet") ... + ), + ref = "presence" + )) %>% + select(-ecoreg)
bradypus_tb %>% plot_pres_vs_bg(presence) Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ``` -
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown
timetk
- Version: 2.9.0
- GitHub: https://github.com/business-science/timetk
- Source code: https://github.com/cran/timetk
- Date/Publication: 2023-10-31 22:30:02 UTC
- Number of recursive dependencies: 204
Run
revdepcheck::cloud_details(, "timetk")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ... 7. └─timetk:::plot_time_series.grouped_df(...) 8. ├─timetk::plot_time_series(...) 9. └─timetk:::plot_time_series.data.frame(...)
- ├─plotly::ggplotly(g, dynamicTicks = TRUE)
- └─plotly:::ggplotly.ggplot(g, dynamicTicks = TRUE)
- └─plotly::gg2list(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 406 ] Error: Test failures Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 2750 marked UTF-8 strings
tinyarray
- Version: 2.4.3
- GitHub: https://github.com/xjsun1221/tinyarray
- Source code: https://github.com/cran/tinyarray
- Date/Publication: 2025-03-05 13:20:02 UTC
- Number of recursive dependencies: 248
Run
revdepcheck::cloud_details(, "tinyarray")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘tinyarray-Ex.R’ failed The error most likely occurred in:
Name: box_surv
Title: box_surv
Aliases: box_surv
** Examples
if(requireNamespace("ggpubr",quietly = TRUE)) { ... Please use
theme()to construct themes. Warning:aes_string()was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms withaes(). ℹ See alsovignette("ggplot2-in-packages")for more information. ℹ The deprecated feature was likely used in the tinyarray package. Please report the issue at https://github.com/xjsun1221/tinyarray/issues. Error: Can't find method for generic&(e1, e2): - e1: - e2: Execution halted ```
tmt
- Version: 0.3.4-0
- GitHub: https://github.com/jansteinfeld/tmt
- Source code: https://github.com/cran/tmt
- Date/Publication: 2024-05-03 15:00:02 UTC
- Number of recursive dependencies: 76
Run
revdepcheck::cloud_details(, "tmt")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tmt)
- tmt 0.3.4-0 (2024-05-02)
test_check("tmt") The following items are specified in the dataset, but not in the submitted mstdesign: ii1 The following items are specified in the mstdesign, but not in the dataset: i1 ... [1] 1 - 11 == -10 Backtrace: ▆
- └─testthat::expect_that(length(p), equals(11)) at test-tmt_gmc.R:34:5
- └─testthat (local) condition(object)
- └─testthat::expect_equal(x, expected, ..., expected.label = label)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 362 ] Error: Test failures Execution halted ```
- tmt 0.3.4-0 (2024-05-02)
In both
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘dexterMST’
TPMplt
- Version: 0.1.6
- GitHub: https://github.com/CubicZebra/TPMplt
- Source code: https://github.com/cran/TPMplt
- Date/Publication: 2024-10-01 13:20:05 UTC
- Number of recursive dependencies: 90
Run
revdepcheck::cloud_details(, "TPMplt")for more infoNewly broken
- checking whether package ‘TPMplt’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘TPMplt’ See ‘/tmp/workdir/TPMplt/new/TPMplt.Rcheck/00install.out’ for details.
track2KBA
- Version: 1.1.2
- GitHub: https://github.com/BirdLifeInternational/track2kba
- Source code: https://github.com/cran/track2KBA
- Date/Publication: 2024-07-01 10:40:07 UTC
- Number of recursive dependencies: 93
Run
revdepcheck::cloud_details(, "track2KBA")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if ( requireNamespace("tinytest", quietly=TRUE) ){
- tinytest::test_package("track2KBA")
- }
test_estSpaceUse.R............ 0 tests Attaching package: 'lubridate'
... with cells of 0.411 square km
test_mapKDE.R................. 1 tests [0;32mOK[0m test_mapKDE.R................. 2 tests [0;32mOK[0m Error in if (msg != "") { : the condition has length > 1 Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun In addition: Warning message: In Matching::ks.boot(WI, BW, alternative = "two.sided", nboots = iterations) : For publication quality p-values it is recommended that 'nboots' be set equal to at least 500 (preferably 1000) Execution halted ```
tradeoffaucdim
- Version: 0.1.0
- GitHub: https://github.com/luisgarcez11/tradeoffaucdim
- Source code: https://github.com/cran/tradeoffaucdim
- Date/Publication: 2025-05-02 09:40:02 UTC
- Number of recursive dependencies: 141
Run
revdepcheck::cloud_details(, "tradeoffaucdim")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview ...
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-05-plot_curve.R:11:3'): output ─────────────────────────────── plot_curve(obj4)$plot_performance has type 'object', not 'list'. ── Failure ('test-05-plot_curve.R:12:3'): output ─────────────────────────────── plot_curve(obj4)$plot_time has type 'object', not 'list'.
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 38 ] Error: Test failures Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘speedglm’ All declared Imports should be used.
trajmsm
- Version: 0.1.3
- GitHub: https://github.com/awamaeva/R-package-trajmsm
- Source code: https://github.com/cran/trajmsm
- Date/Publication: 2024-10-05 19:00:02 UTC
- Number of recursive dependencies: 34
Run
revdepcheck::cloud_details(, "trajmsm")for more infoNewly broken
- checking whether package ‘trajmsm’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘trajmsm’ See ‘/tmp/workdir/trajmsm/new/trajmsm.Rcheck/00install.out’ for details.
TransProR
- Version: 1.0.3
- GitHub: https://github.com/SSSYDYSSS/TransProR
- Source code: https://github.com/cran/TransProR
- Date/Publication: 2025-02-18 09:00:05 UTC
- Number of recursive dependencies: 209
Run
revdepcheck::cloud_details(, "TransProR")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘TransProR-Ex.R’ failed The error most likely occurred in:
Name: highlight_by_node
Title: Highlight Nodes in a Phylogenetic Tree with Custom Fill Colors
and Transparency
Aliases: highlight_by_node
** Examples
... p2 <- highlight_by_node( + p2_plot, + nodes, + fill_colors, + alpha_values, + extend_values + ) Error in ggtree_object + layer : non-numeric argument to binary operator Calls: highlight_by_node Execution halted ```
trelliscopejs
- Version: 0.2.6
- GitHub: https://github.com/hafen/trelliscopejs
- Source code: https://github.com/cran/trelliscopejs
- Date/Publication: 2021-02-01 08:00:02 UTC
- Number of recursive dependencies: 102
Run
revdepcheck::cloud_details(, "trelliscopejs")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(trelliscopejs) > > test_check("trelliscopejs") [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ... 4. └─base::lapply(...) 5. └─trelliscopejs (local) FUN(X[[i]], ...) 6. ├─base::do.call(plotly::ggplotly, c(list(p = q), plotly_args)) 7. ├─plotly (local)
<fn>(p =<ggplt2::>) 8. └─plotly:::ggplotly.ggplot(p =<ggplt2::>) 9. └─plotly::gg2list(...)[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted ```
-
checking S3 generic/method consistency ... WARNING
ggplot_add: function(object, plot, ...) ggplot_add.facet_trelliscope: function(object, plot, object_name) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual.
tricolore
- Version: 1.2.4
- GitHub: https://github.com/jschoeley/tricolore
- Source code: https://github.com/cran/tricolore
- Date/Publication: 2024-05-15 15:00:02 UTC
- Number of recursive dependencies: 104
Run
revdepcheck::cloud_details(, "tricolore")for more infoNewly broken
- checking whether package ‘tricolore’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/00install.out’ for details.
Newly fixed
- checking data for non-ASCII characters ... NOTE
Note: found 2 marked UTF-8 strings
Installation
Devel
* installing *source* package ‘tricolore’ ... ** package ‘tricolore’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error: .onLoad failed in loadNamespace() for 'ggtern', details: call: NULL error: <ggplot2::element_line> object properties are invalid: - @lineend must be <character> or <NULL>, not S3<arrow> Execution halted ERROR: lazy loading failed for package ‘tricolore’ * removing ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/tricolore’CRAN
* installing *source* package ‘tricolore’ ... ** package ‘tricolore’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tricolore)triplot
- Version: 1.3.0
- GitHub: https://github.com/ModelOriented/triplot
- Source code: https://github.com/cran/triplot
- Date/Publication: 2020-07-13 17:00:03 UTC
- Number of recursive dependencies: 73
Run
revdepcheck::cloud_details(, "triplot")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘triplot-Ex.R’ failed The error most likely occurred in:
Name: plot.triplot
Title: Plots triplot
Aliases: plot.triplot
** Examples
library(DALEX) ... explainer_apartments <- explain(model = apartments_num_lm_model, + data = apartments_num[,-1], + y = apartments_num[, 1], + verbose = FALSE) apartments_tri <- calculate_triplot(x = explainer_apartments, + new_observation = apartments_num_new_observation[-1]) plot(apartments_tri) Error: object properties are invalid: - @labels must be , not Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(triplot) > > test_check("triplot") Welcome to DALEX (version: 2.4.3). Find examples and detailed introduction at: http://ema.drwhy.ai/ Additional features will be available after installation of: ggpubr. ...
- └─ggplot2::update_ggplot(object = object, plot = plot, ...)
- ├─S7::S7_dispatch()
- └─ggplot2 (local)
method(update_ggplot, list(ggplot2::theme, ggplot2::ggplot))(...) - └─S7::set_props(plot, theme = add_theme(plot@theme, object))
- └─S7::
props<-(*tmp*, value = list(...)) - └─S7::validate(object)
[ FAIL 2 | WARN 3 | SKIP 0 | PASS 74 ] Error: Test failures Execution halted ```
In both
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
triptych
- Version: 0.1.3
- GitHub: https://github.com/aijordan/triptych
- Source code: https://github.com/cran/triptych
- Date/Publication: 2024-06-13 15:50:02 UTC
- Number of recursive dependencies: 61
Run
revdepcheck::cloud_details(, "triptych")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘triptych-Ex.R’ failed The error most likely occurred in:
Name: plot.triptych
Title: Plot methods for the triptych classes
Aliases: plot.triptych autoplot.triptych plot.triptych_murphy
autoplot.triptych_murphy plot.triptych_reliability
autoplot.triptych_reliability plot.triptych_roc autoplot.triptych_roc
plot.triptych_mcbdsc autoplot.triptych_mcbdsc
...
** Examples
data(ex_binary, package = "triptych") tr <- triptych(ex_binary)
dplyr::slice(tr, 1, 3, 6, 9) |> autoplot() Error: Can't find method for generic
&(e1, e2): - e1: - e2: Execution halted ```
tsnet
- Version: 0.1.0
- GitHub: https://github.com/bsiepe/tsnet
- Source code: https://github.com/cran/tsnet
- Date/Publication: 2024-02-28 11:30:02 UTC
- Number of recursive dependencies: 73
Run
revdepcheck::cloud_details(, "tsnet")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... Chain 1: [ FAIL 1 | WARN 16 | SKIP 0 | PASS 107 ]
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-centrality.R:52:3'): plot_centrality returns expected output ──
resulthas type 'object', not 'list'.[ FAIL 1 | WARN 16 | SKIP 0 | PASS 107 ] Error: Test failures Execution halted ```
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installed size is 159.7Mb sub-directories of 1Mb or more: libs 158.7Mb -
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
ulrb
- Version: 0.1.6
- GitHub: https://github.com/pascoalf/ulrb
- Source code: https://github.com/cran/ulrb
- Date/Publication: 2025-04-07 09:50:02 UTC
- Number of recursive dependencies: 80
Run
revdepcheck::cloud_details(, "ulrb")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘Glossary.Rmd’ using rmarkdown --- finished re-building ‘Glossary.Rmd’
--- re-building ‘eco-analysis.Rmd’ using rmarkdown ```
umiAnalyzer
- Version: 1.0.0
- GitHub: https://github.com/sfilges/umiAnalyzer
- Source code: https://github.com/cran/umiAnalyzer
- Date/Publication: 2021-11-25 08:40:02 UTC
- Number of recursive dependencies: 111
Run
revdepcheck::cloud_details(, "umiAnalyzer")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘umiAnalyzer-Ex.R’ failed The error most likely occurred in:
Name: AmpliconPlot
Title: Generate Amplicon plots
Aliases: AmpliconPlot
** Examples
library(umiAnalyzer) ... ℹ Please use tidy evaluation idioms with
aes()ℹ The deprecated feature was likely used in the umiAnalyzer package. Please report the issue at https://github.com/sfilges/umiAnalyzer/issues. Warning: Usingsizeaesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please uselinewidthinstead. ℹ The deprecated feature was likely used in the umiAnalyzer package. Please report the issue at https://github.com/sfilges/umiAnalyzer/issues. Error in pm[[2]] : subscript out of bounds Calls: AmpliconPlot -> -> ggplotly.ggplot -> gg2list Execution halted ```
UnalR
- Version: 1.0.0
- GitHub: https://github.com/estadisticaun/UnalR
- Source code: https://github.com/cran/UnalR
- Date/Publication: 2024-05-25 17:20:05 UTC
- Number of recursive dependencies: 167
Run
revdepcheck::cloud_details(, "UnalR")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(UnalR) > > test_check("UnalR") Starting 2 test processes [ FAIL 1 | WARN 4 | SKIP 2 | PASS 73 ]
... ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-Plot_Boxplot.R:48:3', 'test-Tabla.R:40:3'
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-Plot_Series.R:110:3'): Plot.Series() captura de algunos valores claves a retornar ──
output_PlotSerieshas type 'object', not 'list'.[ FAIL 1 | WARN 4 | SKIP 2 | PASS 73 ] Error: Test failures Execution halted ```
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installed size is 7.0Mb sub-directories of 1Mb or more: R 2.3Mb data 2.0Mb help 2.7Mb -
checking data for non-ASCII characters ... NOTE
Note: found 312859 marked UTF-8 strings
usmap
- Version: 0.8.0
- GitHub: https://github.com/pdil/usmap
- Source code: https://github.com/cran/usmap
- Date/Publication: 2025-05-28 08:00:02 UTC
- Number of recursive dependencies: 87
Run
revdepcheck::cloud_details(, "usmap")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘usmap-Ex.R’ failed The error most likely occurred in:
Name: .east_north_central
Title: East North Central census division
Aliases: .east_north_central
Keywords: datasets
** Examples
plot_usmap(include = .east_north_central, labels = TRUE) Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : package tibble not available: install first? Calls: plot_usmap ... st_read -> st_read.character -> process_cpl_read_ogr Execution halted ```
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checking tests ... ERROR
Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview ... • data/statepov.svg • plot/arizona-county-map-with-labels-and-fill.svg • plot/example-data-state-map-with-custom-linewidth.svg • plot/new-england-state-map-with-labels-excluding-maine.svg • plot/southeastern-states-map-with-labels.svg • plot/state-map-with-labels.svg • plot/state-map-with-major-rivers.svg • plot/state-population-map-with-blue-outlines.svg Error: Test failures Execution halted -
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘usmap1.Rmd’ using rmarkdown
Quitting from usmap1.Rmd:25-27 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
process_cpl_read_ogr(): ! package tibble not available: install first?Backtrace: ...
Error: processing vignette 'usmap3.Rmd' failed with diagnostics: package tibble not available: install first? --- failed re-building ‘usmap3.Rmd’
SUMMARY: processing the following files failed: ‘usmap1.Rmd’ ‘usmap2.Rmd’ ‘usmap3.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
- checking data for non-ASCII characters ... NOTE
Note: found 17 marked UTF-8 strings
utile.visuals
- Version: 0.3.3
- GitHub: https://github.com/efinite/utile.visuals
- Source code: https://github.com/cran/utile.visuals
- Date/Publication: 2023-01-24 01:00:02 UTC
- Number of recursive dependencies: 37
Run
revdepcheck::cloud_details(, "utile.visuals")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘utile.visuals-Ex.R’ failed The error most likely occurred in:
Name: append_table
Title: Append a ggplot2 table to the bottom of a ggplot2 plot
Aliases: append_table
** Examples
library(survival) ... + aesthetics = c('colour', 'fill')) + + theme_basic()
Risk Table
tbl_risk <- ggrisktable(fit, c(0, 10, 20, 30, 40, 50)) + + coord_cartesian(c(0, 50)) + + scale_x_continuous(expand = c(0.02,0)) + + theme_risk() Error: Can't find property @hjust Execution halted ```
vaccine
- Version: 1.3.0
- GitHub: https://github.com/Avi-Kenny/vaccine
- Source code: https://github.com/cran/vaccine
- Date/Publication: 2025-01-07 18:00:01 UTC
- Number of recursive dependencies: 151
Run
revdepcheck::cloud_details(, "vaccine")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(vaccine) vaccine (version 1.3.0). Type ?vaccine to get started. > > test_check("vaccine") Loading required package: nnls ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-test-core-functions.R:320:3'): plot_ce ─────────────────────── class(p) (actual) not equal to c("gg", "ggplot") (expected`).actual: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"expected[2:2]: "ggplot"[ FAIL 1 | WARN 0 | SKIP 0 | PASS 165 ] Error: Test failures Execution halted ```
vaccineff
- Version: 1.0.0
- GitHub: https://github.com/epiverse-trace/vaccineff
- Source code: https://github.com/cran/vaccineff
- Date/Publication: 2024-11-29 09:30:02 UTC
- Number of recursive dependencies: 72
Run
revdepcheck::cloud_details(, "vaccineff")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html ...expectedis a character vector ('coverage * max(dose_plot)') ── Failure ('test-utils_coverage.R:50:3'):plot_coverage: cumulative plot ──── plt$labels$y (actual) not identical to "coverage * max(dose_plot)" (expected`).actualis NULLexpectedis a character vector ('coverage * max(dose_plot)')[ FAIL 2 | WARN 0 | SKIP 6 | PASS 100 ] Error: Test failures Execution halted ```
valr
- Version: 0.8.3
- GitHub: https://github.com/rnabioco/valr
- Source code: https://github.com/cran/valr
- Date/Publication: 2025-01-11 15:40:02 UTC
- Number of recursive dependencies: 146
Run
revdepcheck::cloud_details(, "valr")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_glyph.r:13:3'): glyph labels are applied ───────────────────── res$labels$label (actual) not equal to "id" (expected`).actualis NULLexpectedis a character vector ('id')[ FAIL 1 | WARN 0 | SKIP 4 | PASS 479 ] Error: Test failures Execution halted ```
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- checking installed package size ... NOTE
installed size is 15.1Mb sub-directories of 1Mb or more: libs 13.9Mb
vanquish
- Version: 1.0.0
- GitHub: NA
- Source code: https://github.com/cran/vanquish
- Date/Publication: 2018-09-05 14:50:04 UTC
- Number of recursive dependencies: 31
Run
revdepcheck::cloud_details(, "vanquish")for more infoNewly broken
- checking whether package ‘vanquish’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘vanquish’ See ‘/tmp/workdir/vanquish/new/vanquish.Rcheck/00install.out’ for details.
VarSelLCM
- Version: 2.1.3.1
- GitHub: NA
- Source code: https://github.com/cran/VarSelLCM
- Date/Publication: 2020-10-14 16:34:36 UTC
- Number of recursive dependencies: 60
Run
revdepcheck::cloud_details(, "VarSelLCM")for more infoNewly broken
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checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘VarSelLCM.Rmd’ using rmarkdown
Quitting from VarSelLCM.Rmd:112-115 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in
rep(): ! attempt to replicate an object of type 'object'Backtrace: ...
Error: processing vignette 'VarSelLCM.Rmd' failed with diagnostics: attempt to replicate an object of type 'object' --- failed re-building ‘VarSelLCM.Rmd’
SUMMARY: processing the following file failed: ‘VarSelLCM.Rmd’
Error: Vignette re-building failed. Execution halted ```
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- checking installed package size ... NOTE
installed size is 17.3Mb sub-directories of 1Mb or more: libs 16.5Mb
vDiveR
- Version: 2.0.1
- GitHub: NA
- Source code: https://github.com/cran/vDiveR
- Date/Publication: 2024-11-22 08:20:02 UTC
- Number of recursive dependencies: 105
Run
revdepcheck::cloud_details(, "vDiveR")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘vDiveR-Ex.R’ failed The error most likely occurred in:
Name: plot_conservation_level
Title: Conservation Levels Distribution Plot
Aliases: plot_conservation_level
** Examples
plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15) ... 32. │ └─base::lapply(...) 33. │ └─ggplot2 (local) FUN(X[[i]], ...) 34. │ └─ggplot2 (local) apply_fun(cur_data) 35. │ └─ggplot2 (local) fun(x, ...) 36. └─base::.handleSimpleError(...) 37. └─rlang (local) h(simpleError(msg, call)) 38. └─handlers[1L] 39. └─cli::cli_abort(...) 40. └─rlang::abort(...) Execution halted ```
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘maps’ All declared Imports should be used.
vip
- Version: 0.4.1
- GitHub: https://github.com/koalaverse/vip
- Source code: https://github.com/cran/vip
- Date/Publication: 2023-08-21 09:20:02 UTC
- Number of recursive dependencies: 102
Run
revdepcheck::cloud_details(, "vip")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if (requireNamespace("tinytest", quietly = TRUE)) {
- home <- length(unclass(packageVersion("vip"))[[1L]]) == 4
- tinytest::test_package("vip", at_home = home)
- }
Attaching package: 'vip'
... test_vip.R.................... 0 tests test_vip.R.................... 1 tests [0;32mOK[0m test_vip.R.................... 2 tests [0;32mOK[0m test_vip.R.................... 3 tests [0;32mOK[0m [0;36m8ms[0m ----- FAILED[data]: test_pkg_nnet.R<47--50> call| expect_identical(current = class(p), target = c("gg", "ggplot")) diff| Lengths (2, 5) differ (string compare on first 2) diff| 1 string mismatch Error: 1 out of 25 tests failed Execution halted ```
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checking package dependencies ... NOTE
Packages which this enhances but not available for checking: 'C50', 'caret', 'Cubist', 'earth', 'gbm', 'glmnet', 'h2o', 'lightgbm', 'mixOmics', 'mlr', 'mlr3', 'neuralnet', 'parsnip', 'partykit', 'pls', 'randomForest', 'ranger', 'RSNNS', 'sparklyr', 'tidymodels', 'workflows', 'xgboost' -
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘randomForest’, ‘glmnet’, ‘C50’, ‘Cubist’, ‘caret’, ‘partykit’, ‘earth’, ‘gbm’, ‘h2o’, ‘sparklyr’, ‘ranger’, ‘xgboost’, ‘lightgbm’
visualpred
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/visualpred
- Date/Publication: 2024-11-07 12:30:02 UTC
- Number of recursive dependencies: 115
Run
revdepcheck::cloud_details(, "visualpred")for more infoNewly broken
- checking whether package ‘visualpred’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘visualpred’ See ‘/tmp/workdir/visualpred/new/visualpred.Rcheck/00install.out’ for details.
vivaldi
- Version: 1.0.1
- GitHub: https://github.com/GreshamLab/vivaldi
- Source code: https://github.com/cran/vivaldi
- Date/Publication: 2023-03-21 20:10:02 UTC
- Number of recursive dependencies: 99
Run
revdepcheck::cloud_details(, "vivaldi")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘vivaldi-Ex.R’ failed The error most likely occurred in:
Name: snv_location
Title: snv_location
Aliases: snv_location
** Examples
Example 1:
... 6 m2 PB1 234 G A minor 0.010 0.990 7 m2 PB1 266 G A minor 0.022 0.978 8 m2 PB2 199 A G minor 0.043 0.957 9 m2 PB2 88 G A major 0.055 0.945 10 m2 PB2 180 C T minor 0.011 0.989
snv_location(df) Error in pm[[2]] : subscript out of bounds Calls: snv_location -> -> ggplotly.ggplot -> gg2list Execution halted ```
-
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...
══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-snv_location.R:13:3'): expect output ───────────────────────── Expected
snv_location(df)to run without any errors. i Actually got a with text: subscript out of bounds[ FAIL 1 | WARN 2 | SKIP 0 | PASS 28 ] Error: Test failures Execution halted ```
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checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘vignette.Rmd’ using rmarkdown
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- checking installed package size ... NOTE
installed size is 6.8Mb sub-directories of 1Mb or more: doc 5.4Mb extdata 1.1Mb
voluModel
- Version: 0.2.2
- GitHub: https://github.com/hannahlowens/voluModel
- Source code: https://github.com/cran/voluModel
- Date/Publication: 2024-08-20 22:50:01 UTC
- Number of recursive dependencies: 130
Run
revdepcheck::cloud_details(, "voluModel")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘voluModel-Ex.R’ failed The error most likely occurred in:
Name: pointCompMap
Title: Comparative point mapping
Aliases: pointCompMap
Keywords: plotting
** Examples
... 9. └─ggplot2 (local) setup(..., self = self) 10. └─self$coord$setup_params(data) 11. └─ggplot2 (local) setup_params(..., self = self) 12. └─ggproto_parent(Coord, self)$setup_params(data) 13. └─ggplot2 (local) setup_params(..., self = self) 14. └─ggplot2:::parse_coord_expand(expand = self$expand %||% TRUE) 15. └─ggplot2:::check_logical(expand) 16. └─ggplot2:::stop_input_type(...) 17. └─rlang::abort(message, ..., call = call, arg = arg) Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘a_Introduction.Rmd’ using rmarkdown
Quitting from a_Introduction.Rmd:43-58 [show points] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a_Introduction.Rmd' failed with diagnostics:
expandmust be a logical vector, not the number 0.05. --- failed re-building ‘a_Introduction.Rmd’--- re-building ‘b_RasterProcessing.Rmd’ using rmarkdown ```
vvshiny
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/vvshiny
- Date/Publication: 2023-07-19 15:30:02 UTC
- Number of recursive dependencies: 133
Run
revdepcheck::cloud_details(, "vvshiny")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...
- ├─vvshiny::ggplotly_with_legend(p, color = "grp", mapping_table = list(grp = "Group")) at test-ggplotly_with_legend.R:15:3
- │ ├─plotly::ggplotly(plot) %>% ...
- │ ├─plotly::ggplotly(plot)
- │ └─plotly:::ggplotly.ggplot(plot)
- │ └─plotly::gg2list(...)
- └─plotly::layout(...)
[ FAIL 3 | WARN 4 | SKIP 0 | PASS 58 ] Error: Test failures Execution halted ```
washi
- Version: 0.2.0
- GitHub: https://github.com/WA-Department-of-Agriculture/washi
- Source code: https://github.com/cran/washi
- Date/Publication: 2023-09-07 23:50:02 UTC
- Number of recursive dependencies: 85
Run
revdepcheck::cloud_details(, "washi")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files ...expected: 0.0 ── Failure ('test-theme.R:31:3'): washi_theme() works ────────────────────────── length(theme$panel.grid.major.y) (actual) not equal to 0 (expected`).`actual`: 1.0expected: 0.0[ FAIL 2 | WARN 4 | SKIP 5 | PASS 13 ] Error: Test failures Execution halted ```
wilson
- Version: 2.4.2
- GitHub: https://github.com/loosolab/wilson
- Source code: https://github.com/cran/wilson
- Date/Publication: 2021-04-19 09:40:02 UTC
- Number of recursive dependencies: 202
Run
revdepcheck::cloud_details(, "wilson")for more infoNewly broken
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checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(wilson)
Attaching package: 'wilson'
The following object is masked from 'package:stats':
... Backtrace: ▆ 1. └─wilson::create_geneview(...) at test-interactive-plots.R:21:3 2. ├─plotly::ggplotly(...) 3. └─plotly:::ggplotly.ggplot(...) 4. └─plotly::gg2list(...)
[ FAIL 3 | WARN 11 | SKIP 1 | PASS 74 ] Error: Test failures Execution halted ```
windfarmGA
- Version: 4.0.0
- GitHub: https://github.com/YsoSirius/windfarmGA
- Source code: https://github.com/cran/windfarmGA
- Date/Publication: 2025-01-18 11:00:02 UTC
- Number of recursive dependencies: 115
Run
revdepcheck::cloud_details(, "windfarmGA")for more infoNewly broken
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checking tests ... ERROR
`` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...expected`: TRUE ── Failure ('test_plots.R:126:3'): Test Plotting Functions ───────────────────── class(windr_res)[1] == "gg" is not TRUEactual: FALSEexpected: TRUE[ FAIL 2 | WARN 0 | SKIP 2 | PASS 703 ] Error: Test failures Execution halted ```
wql
- Version: 1.0.2
- GitHub: https://github.com/jsta/wql
- Source code: https://github.com/cran/wql
- Date/Publication: 2025-01-23 10:10:02 UTC
- Number of recursive dependencies: 52
Run
revdepcheck::cloud_details(, "wql")for more infoNewly broken
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checking examples ... ERROR ``` Running examples in ‘wql-Ex.R’ failed The error most likely occurred in:
Name: eofNum
Title: Plot EOF percent variance
Aliases: eofNum
Keywords: Graphics ts
** Examples
Create an annual time series data matrix from sfbay chlorophyll data
Average over each year
chla1 <- aggregate(sfbayChla, 1, mean, na.rm = TRUE) chla1 <- chla1[, 1:12] # remove stations with missing years eofNum(chla1) Error: object is invalid: - every label must be named. Execution halted ```
-
checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘wql-package.Rmd’ using rmarkdown
xaringanthemer
- Version: 0.4.3
- GitHub: https://github.com/gadenbuie/xaringanthemer
- Source code: https://github.com/cran/xaringanthemer
- Date/Publication: 2024-09-15 14:00:02 UTC
- Number of recursive dependencies: 72
Run
revdepcheck::cloud_details(, "xaringanthemer")for more infoNewly broken
- checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes: --- re-building ‘ggplot2-themes.Rmd’ using rmarkdown
xpose
- Version: 0.4.19
- GitHub: https://github.com/UUPharmacometrics/xpose
- Source code: https://github.com/cran/xpose
- Date/Publication: 2025-01-07 20:00:02 UTC
- Number of recursive dependencies: 105
Run
revdepcheck::cloud_details(, "xpose")for more infoNewly broken
- checking whether package ‘xpose’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/xpose/new/xpose.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘xpose’ ... ** package ‘xpose’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB Error in get("print.ggplot", envir = asNamespace("ggplot2")) : object 'print.ggplot' not found Warning: namespace ‘xpose’ is not available and has been replaced by .GlobalEnv when processing object ‘xpdb_ex_pk’ ... Warning: namespace ‘xpose’ is not available and has been replaced by .GlobalEnv when processing object ‘xpdb_ex_pk’ ** inst ** byte-compile and prepare package for lazy loading Error in get("print.ggplot", envir = asNamespace("ggplot2")) : object 'print.ggplot' not found Error: unable to load R code in package ‘xpose’ Execution halted ERROR: lazy loading failed for package ‘xpose’ * removing ‘/tmp/workdir/xpose/new/xpose.Rcheck/xpose’CRAN
* installing *source* package ‘xpose’ ... ** package ‘xpose’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xpose)xpose.xtras
- Version: 0.0.2
- GitHub: https://github.com/jprybylski/xpose.xtras
- Source code: https://github.com/cran/xpose.xtras
- Date/Publication: 2024-11-21 17:20:02 UTC
- Number of recursive dependencies: 106
Run
revdepcheck::cloud_details(, "xpose.xtras")for more infoNewly broken
-
checking examples ... ERROR ``` Running examples in ‘xpose.xtras-Ex.R’ failed The error most likely occurred in:
Name: catdv_vs_dvprobs
Title: Non-simulation based likelihood model diagnostic
Aliases: catdv_vs_dvprobs
** Examples
... 4. ├─purrr::map_if(...) 5. │ └─purrr:::where_if(.x, .p) 6. │ └─rlang::is_logical(.p) 7. ├─stringr::str_detect(., "@") 8. │ └─stringr:::check_lengths(string, pattern) 9. │ └─vctrs::vec_size_common(...) 10. └─vctrs:::stop_scalar_type(
<fn>(<ggplt2::>), "string",<env>) 11. └─vctrs:::stop_vctrs(...) 12. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted ``` -
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html ...
- ├─stringr::str_detect(., "@")
- │ └─stringr:::check_lengths(string, pattern)
- │ └─vctrs::vec_size_common(...)
- └─vctrs:::stop_scalar_type(
<fn>(<ggplt2::>), "string",<env>) - └─vctrs:::stop_vctrs(...)
- └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
[ FAIL 10 | WARN 0 | SKIP 4 | PASS 622 ] Error: Test failures Execution halted ```
-
checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: --- re-building ‘a01-the-xp_xtra-object.Rmd’ using rmarkdown
Quitting from a01-the-xp_xtra-object.Rmd:94-96 [plot_cont] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a01-the-xp_xtra-object.Rmd' failed with diagnostics:
stringmust be a vector, not a object. ... Error: processing vignette 'a03-useful_plots.Rmd' failed with diagnostics:stringmust be a vector, not a object. --- failed re-building ‘a03-useful_plots.Rmd’SUMMARY: processing the following files failed: ‘a01-the-xp_xtra-object.Rmd’ ‘a02-xpose-sets.Rmd’ ‘a03-useful_plots.Rmd’
Error: Vignette re-building failed. Execution halted ```
In both
-
checking installed package size ... NOTE
installed size is 7.9Mb sub-directories of 1Mb or more: data 2.5Mb doc 2.4Mb -
checking data for non-ASCII characters ... NOTE
Note: found 2 marked UTF-8 strings
yamlet
- Version: 1.2.1
- GitHub: https://github.com/bergsmat/yamlet
- Source code: https://github.com/cran/yamlet
- Date/Publication: 2025-04-18 12:30:02 UTC
- Number of recursive dependencies: 100
Run
revdepcheck::cloud_details(, "yamlet")for more infoNewly broken
-
checking S3 generic/method consistency ... WARNING ``` ggplot_add: function(object, plot, ...) ggplot_add.ggplot_isometric: function(object, plot, object_name)
ggplot_add: function(object, plot, ...) ggplot_add.ggplot_symmetric: function(object, plot, object_name)
ggplot_build: function(plot, ...) ggplot_build.decorated_ggplot: function(plot) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. ```
In both
- checking re-building of vignette outputs ... WARNING
Error(s) in re-building vignettes: --- re-building ‘scripted-html.Rmd’ using rmarkdown
ZetaSuite
- Version: 1.0.1
- GitHub: NA
- Source code: https://github.com/cran/ZetaSuite
- Date/Publication: 2022-05-24 19:40:02 UTC
- Number of recursive dependencies: 78
Run
revdepcheck::cloud_details(, "ZetaSuite")for more infoNewly broken
- checking whether package ‘ZetaSuite’ can be installed ... WARNING
Found the following significant warnings: Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘ZetaSuite’ See ‘/tmp/workdir/ZetaSuite/new/ZetaSuite.Rcheck/00install.out’ for details.
In both
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.
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