addModuleScore: Add Module Scores to an ArchRProject
In haibol2016/ArchR: Analyzing single-cell regulatory chromatin in R.

addModuleScore

R Documentation

Add Module Scores to an ArchRProject

Description

This function computes imputations weights that describe each cell as a linear combination of many cells based on a MAGIC diffusion matrix.

Usage

addModuleScore(
  ArchRProj = NULL,
  useMatrix = NULL,
  name = "Module",
  features = NULL,
  nBin = 25,
  nBgd = 100,
  seed = 1,
  threads = getArchRThreads(),
  logFile = createLogFile("addModuleScore")
)

Arguments

`ArchRProj`	An `ArchRProject` object.
`seed`	A number to be used as the seed for random number generation. It is recommended to keep track of the seed used so that you can reproduce results downstream.
`threads`	The number of threads to be used for parallel computing.
`logFile`	The path to a file to be used for logging ArchR output.