addMonocleTrajectory: Add a Monocle Trajectory to an ArchR Project #NEW
In haibol2016/ArchR_debug: Analyzing single-cell regulatory chromatin in R.

addMonocleTrajectory

R Documentation

Add a Monocle Trajectory to an ArchR Project #NEW

This function will add a trajectory from a monocle CDS created from getMonocleTrajectories to an ArchRProject.

addMonocleTrajectory(
  ArchRProj = NULL,
  name = "Trajectory",
  useGroups = NULL,
  groupBy = "Clusters",
  monocleCDS = NULL,
  force = FALSE
)

`ArchRProj`	An `ArchRProject` object.
`name`	A string indicating the name of the fitted trajectory to be added in `cellColData`.
`useGroups`	The cell groups to be used for creating trajectory analysis.
`groupBy`	A string indicating the column name from `cellColData` that contains the cell group definitions used in `useGroups` to constrain trajectory analysis.
`monocleCDS`	A monocle CDS object created from `getMonocleTrajectories`.
`force`	A boolean value indicating whether to force the trajactory indicated by `name` to be overwritten if it already exists in the given `ArchRProject`.