Man pages for haibol2016/cleanUpdTSeq
cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data

BED6WithSeq2GRangesSeqCovert (extended) BED6 file to a GRanges object
buildClassifierBuild a Naive Bayes Classifier
buildFeatureVectorbuild Feature Vector_2
classifierNaiveBayes classifier
cleanUpdTSeqThis package classifies putative polyadenylation sites.
data.NaiveBayesTraining Data
featureVector-classClass '"featureVector"'
getContextSequencesRetrieve upstream and downstream sequences
modelInfo-classClass '"modelInfo"'
naiveBayes-classClass '"naiveBayes"'
PASclassifier-classClass '"PASclassifier"'
predictTestSetpredict authenticity of putative pA sites
haibol2016/cleanUpdTSeq documentation built on April 14, 2022, 9:56 p.m.