NKI70: NKI70 data

In haimbar/SEMMS: Variable selection in Generalized Linear Models - an empirical Bayes approach

Description

The NKI70 data is available from the “penalized” package in R (Goeman, 2010)

Format

The NKI70 data has 144 observations and 72 predictors.

References

Goeman, J J. 2010. "L1 penalized estimation in the Cox proportional hazards model." no. 1. 14

Examples

 ## Not run: 
fn <- system.file("extdata", "NKI70_t1.RData", package = "SEMMS", mustWork = TRUE)
dataYXZ <- readInputFile(fn, ycol=1, Zcols=2:73,addIntercept = TRUE)
fittedSEMMS <- fitSEMMS(dataYXZ, mincor=0.8, nn=6, minchange= 1,
  distribution="P", verbose=T, rnd=F)
fittedGLM <- runLinearModel(dataYXZ,fittedSEMMS$gam.out$nn, "P")
plotMDS(dataYXZ, fittedSEMMS, fittedGLM, ttl="NKI70")
## End(Not run)

haimbar/SEMMS documentation built on Dec. 20, 2021, 2:44 p.m.