Files in haizi-zh/bedtorch
R package for fast BED-file manipulation
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
CHANGELOG.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RcppExports.R
R/bedtorch-package.R
R/data.R
R/io.R
R/manipulation.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
data-raw/benchmark.png
data-raw/get_seqinfo.R
data/hs_seqinfo.rda
data/ncbi_seqinfo.rda
inst/extdata/example2.bed.gz
inst/extdata/example2.bed.gz.tbi
inst/extdata/example2_window.bed
inst/extdata/example_intersect_y.bed
inst/extdata/example_merge.bed
inst/extdata/hg38.chrom.sizes
inst/extdata/human_g1k_v37.chrom.sizes
man/as.GenomicRanges.Rd
man/as.bedtorch_table.Rd
man/cluster_bed.Rd
man/complement_bed.Rd
man/exclude_bed.Rd
man/figures/README-pressure-1.png
man/hs_seqinfo.Rd
man/intersect_bed.Rd
man/jaccard_bed.Rd
man/make_random_bed.Rd
man/make_windows.Rd
man/map_bed.Rd
man/merge_bed.Rd
man/read_bed.Rd
man/read_metadata.Rd
man/reldist_bed.Rd
man/rollmean.Rd
man/rollsum.Rd
man/shuffle_bed.Rd
man/slop_bed.Rd
man/subtract_bed.Rd
man/write_bed.Rd
scripts/benchmark.Rmd
scripts/benchmark.html
scripts/benchmark.nb.html
scripts/benchmark_files/figure-html/unnamed-chunk-1-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-11-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-12-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-2-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-3-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-5-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-6-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-8-1.png
scripts/benchmark_files/figure-html/unnamed-chunk-9-1.png
scripts/exclude_bed.tsv
scripts/intersect_bed_default.tsv
scripts/intersect_bed_unique_bed.tsv
scripts/map_bed.tsv
scripts/merge_bed_bm.tsv
scripts/rolling.R
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/htslib.cpp
src/rollops.cpp
src/zip_compression.cpp
tests/testthat.R
tests/testthat/example2.bed
tests/testthat/example2.bed.gz
tests/testthat/example2.bed.gz.tbi
tests/testthat/example2_cluster_r1.bed
tests/testthat/example2_cluster_r2.bed
tests/testthat/example2_intersect_r1.bed
tests/testthat/example2_intersect_r1_F0_1.bed
tests/testthat/example2_intersect_r1_f0_5.bed
tests/testthat/example2_intersect_r2.bed
tests/testthat/example2_intersect_r3.bed
tests/testthat/example2_intersect_r4_wa.bed
tests/testthat/example2_intersect_r4_wb.bed
tests/testthat/example2_intersect_r4_wo.bed
tests/testthat/example2_map_r1.bed
tests/testthat/example2_merge_r1.bed
tests/testthat/example2_merge_r2.bed
tests/testthat/example2_merge_r3.bed
tests/testthat/example2_subtract_r1.bed
tests/testthat/example2_subtract_r1_f0_5.bed
tests/testthat/example2_window.bed
tests/testthat/example_complement_r1.bed
tests/testthat/example_complement_r2.bed
tests/testthat/example_intersect_r1.bed
tests/testthat/example_intersect_r2.bed
tests/testthat/example_intersect_r3.bed
tests/testthat/example_intersect_y.bed
tests/testthat/example_merge.bed
tests/testthat/example_merge_r1.bed
tests/testthat/example_merge_r2.bed
tests/testthat/example_merge_r3.bed
tests/testthat/example_slop.bed
tests/testthat/example_slop_r1.bed
tests/testthat/example_slop_r2.bed
tests/testthat/example_slop_r3.bed
tests/testthat/example_slop_r4.bed
tests/testthat/test-io.R
tests/testthat/test-manipulation.R
tests/testthat/test-utils.R
