R/bedtorch-package.R

In haizi-zh/bedtorch: R package for fast BED-file manipulation

# Home-made essentials tools for bioinformatics

#' @importFrom stringr str_interp str_split str_detect str_sort str_match str_trim str_remove
#' @importFrom purrr map map_int map_dbl map_lgl map_chr walk pwalk pmap_chr pmap_dfr `%||%` discard keep
#' @importFrom readr read_lines
#' @importFrom tidyr expand_grid
#' @importFrom dplyr `%>%`
#' @importFrom data.table setnames setkey fread fwrite shift setDT data.table rbindlist as.data.table
#' @importFrom GenomicRanges makeGRangesFromDataFrame findOverlaps mcols `mcols<-` pintersect ranges `ranges<-` width 
#' @importFrom GenomeInfoDb seqnames seqlengths seqinfo `seqinfo<-` seqlevels `seqlevels<-` 
#' @importFrom S4Vectors from to
#' @importFrom rlang is_null is_character is_integer is_scalar_character
#' @importFrom assertthat assert_that are_equal
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## usethis namespace: start
#' @useDynLib bedtorch, .registration = TRUE
## usethis namespace: end
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## usethis namespace: start
#' @importFrom Rcpp sourceCpp
## usethis namespace: end
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