GetPathwayData: Get the gene sets of pathways

In hanjunwei-lab/MiRSEA: 'MicroRNA' Set Enrichment Analysis

Description

Get the gene sets of pathways for the three pathway databases (KEGG; Biocarta; Reactome)

Usage

 GetPathwayData(pathway)

Arguments

pathway

choose database of pathway,"kegg","biocarta" or"reactome"

Details

The gene sets of pathways for the three pathway database (KEGG; Biocarta; Reactome)are obtained from the environment variable envData.

Author(s)

Junwei [e-mail],Siyao Liu [e-mail]

Examples

## Not run: 

#obtain the gene sets of  kegg pathways.
pathway<-GetPathwayData("kegg")



## End(Not run)

hanjunwei-lab/MiRSEA documentation built on July 5, 2020, 11:02 a.m.