PAGI-internal: PAGI internal functions

In hanjunwei-lab/PAGI: The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.

Description

These are functions internally called by other functions in the package PAGI and not meant to be called by the user.

Usage

RandomWalk2igraph(igraphM,VertexWeight,EdgeWeight=TRUE,gamma=0.7)
rw(W,p0,gamma)
calTest(A, class.labels)
CalGIF2(obs.Test, netWorkdata)
PAGI.EnrichmentScore(gene.list, gene.set, correl.vector = NULL)
PAGI.EnrichmentScore2(gene.list, gene.set, correl.vector = NULL)
initializePAGIExample()
initializePAGI()

Author(s)

Junwei Han <[e-mail]> Yanjun Xu <[e-mail]> Haixiu Yang <[e-mail]> Chunquan Li <[e-mail]> and Xia Li <[e-mail]>

hanjunwei-lab/PAGI documentation built on July 5, 2020, 11:02 a.m.