Man pages for hansenlab/tricycle
tricycle: Transferable Representation and Inference of cell cycle
| circle_scale_legend | Get the cyclic legend |
| diagnose_totalumi | Diagnostic function for UMI based datasets |
| estimate_cycle_position | Assign cell cycle position |
| estimate_Schwabe_stage | Assign cell cycle stages using Schwabe method |
| fit_periodic_loess | Fit periodic loess line with circular predictor |
| neuroRef | Pre-learned reference projection matrix from the Neurosphere... |
| neurosphere_example | Example SingleCellExperiment dataset |
| plot_ccposition_den | Plot cell cycle position kernel density stratified by a... |
| plot_emb_circle_scale | Plot embedding with cyclic cell cycle position |
| project_cycle_space | Project data into the cell cycle pattern space |
| RevelioGeneList | 5 stage cell cycle gene marker list from Revelio |
| run_pca_cc_genes | Run PCA on Gene Ontology cell cycle genes |
