neuroRef: Pre-learned reference projection matrix from the Neurosphere...

In hansenlab/tricycle: tricycle: Transferable Representation and Inference of cell cycle

Pre-learned reference projection matrix from the Neurosphere dataset

Description

Default reference projection matrix learned from the Neurosphere dataset.

Usage

data(neuroRef)

Format

An object of class ''data.frame'‘, with 5 variables. Normally, user won’t call this data directly as it will be automatically used in project_cycle_space if no custom reference projection matrix is provided. Each row is gene, and rotation scores for PC1 and PC2, mouse ENSEMBL IDs, and mouse gene SYMBOLs are included. The 'SYMBOL' values are just the upper-case 'symbol' values.

References

Zheng SC, et al. Universal prediction of cell cycle position using transfer learning. Genome Biology (2022) 23: 41 doi:10.1186/s13059-021-02581-y.

Examples

data(neuroRef)

hansenlab/tricycle documentation built on March 19, 2022, 7:24 p.m.