DMR_M3vsWT | R Documentation |
A dataset containing the transcriptome location, read counts of 200 candidate DMRs from 4 samples. Each sample contains two paired of IP and input replicates. It also contains size factors estimated from the whole transcriptome to normalize sequencing depth of each sample. In addition, a small proportion of transcriptome bins and their read counts are also included for the purpose of visualizing individual DMR.
data(DMR_M3vsWT)
A list with 5 elements
A dataframe of 200 obs and 5 variables, containing the transcriptome location of each candidate DMR.
A dataframe of 200 obs and 8 variables, caontaining the read counts for candidate DMRs. The counts are from both Wild type and METTL3-Knockout samples. Each has two paired of IP and input replicates.
A numerical vector, containing the size factors of each sample estimated from the whole transcriptome
A dataframe of 737 obs and 5 variables, containing the transcriptome location of bins overlapping with a small subset of 200 candidate DMRs.
Read counts (200-by-8) correspond to "Bins".
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