Files in harpomaxx/galgoR-package
An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/callback-functions.R
R/cluster-classifier.R
R/convert-functions.R
R/distance-functions.R
R/galgo.R
R/plot-functions.R
R/results-functions.R
README.md
_pkgdown.yml
docs/404.html
docs/LICENSE-text.html
docs/articles/GSgalgoR.html
docs/articles/GSgalgoR_callbacks.html
docs/articles/GSgalgoR_files/figure-html/galgo_test_surv-1.png
docs/articles/GSgalgoR_files/figure-html/galgo_train_surv-1.png
docs/articles/GSgalgoR_files/figure-html/pam50_surv_TRANSBIG-1.png
docs/articles/GSgalgoR_files/figure-html/pam50_surv_UPP-1.png
docs/articles/GSgalgoR_files/figure-html/pareto_2-1.png
docs/articles/GSgalgoR_files/figure-html/pareto_2-2.png
docs/articles/GSgalgoR_files/figure-html/plot_pareto-1.png
docs/articles/GSgalgoR_files/figure-html/plot_pareto-2.png
docs/articles/GSgalgoR_files/figure-html/test_pam50-1.png
docs/articles/Galgo_vignette.html
docs/articles/galgoR.html
docs/articles/galgoR_LUAD.html
docs/articles/galgoR_files/figure-html/galgo_test_surv-1.png
docs/articles/galgoR_files/figure-html/galgo_train_surv-1.png
docs/articles/galgoR_files/figure-html/pam50_surv_TRANSBIG-1.png
docs/articles/galgoR_files/figure-html/pam50_surv_UPP-1.png
docs/articles/galgoR_files/figure-html/pareto_2-1.png
docs/articles/galgoR_files/figure-html/plot_pareto-1.png
docs/articles/galgoR_files/figure-html/test_pam50-1.png
docs/articles/galgo_callbacks.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/inst/extdata/images/GSE_galgo.jpg
docs/inst/extdata/images/GSE_galgovswilk.jpg
docs/inst/extdata/images/GSE_wilk.jpg
docs/inst/extdata/images/TCGA_galgo.jpg
docs/inst/extdata/images/TCGA_wilk.jpg
docs/inst/extdata/images/pareto1.jpg
docs/inst/extdata/images/pareto2.jpg
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GSgalgoR-package.html
docs/reference/base_report_callback.html
docs/reference/base_return_pop_callback.html
docs/reference/calculate_distance.html
docs/reference/callback_base_report.html
docs/reference/callback_base_return_pop.html
docs/reference/callback_default.html
docs/reference/callback_no_report.html
docs/reference/classify.html
docs/reference/classify_multiple.html
docs/reference/cluster_algorithm.html
docs/reference/cluster_classify.html
docs/reference/cosine.html
docs/reference/cosine_similarity.html
docs/reference/create_centroids.html
docs/reference/default_callback.html
docs/reference/fitness.html
docs/reference/galgo.Obj-class.html
docs/reference/galgo.html
docs/reference/galgoR-package.html
docs/reference/index.html
docs/reference/k_centroids.html
docs/reference/kcentroid.html
docs/reference/no_report_callback.html
docs/reference/non_dominated_summary.html
docs/reference/plot_pareto-1.png
docs/reference/plot_pareto-2.png
docs/reference/plot_pareto.html
docs/reference/surv_fitness.html
docs/reference/toDataFrame.html
docs/reference/toList.html
docs/reference/to_dataframe.html
docs/reference/to_list.html
docs/reference/use_rna_luad.html
inst/CITATION
inst/extdata/GSgalgoR.png
inst/extdata/GalgoR.png
inst/extdata/galgoR-logo.jpeg
inst/extdata/images/GSE_galgo.jpg
inst/extdata/images/GSE_galgovswilk.jpg
inst/extdata/images/GSE_wilk.jpg
inst/extdata/images/TCGA_galgo.jpg
inst/extdata/images/TCGA_wilk.jpg
inst/extdata/images/pareto1.jpg
inst/extdata/images/pareto2.jpg
inst/extdata/results/final_1.rda
inst/extdata/results/final_2.rda
man/GSgalgoR-package.Rd
man/calculate_distance.Rd
man/callback_base_report.Rd
man/callback_base_return_pop.Rd
man/callback_default.Rd
man/callback_no_report.Rd
man/classify_multiple.Rd
man/cluster_algorithm.Rd
man/cluster_classify.Rd
man/cosine_similarity.Rd
man/create_centroids.Rd
man/galgo.Obj-class.Rd
man/galgo.Rd
man/k_centroids.Rd
man/non_dominated_summary.Rd
man/plot_pareto.Rd
man/surv_fitness.Rd
man/to_dataframe.Rd
man/to_list.Rd
tests/testthat.R
tests/testthat/test-callbacks.R
tests/testthat/test-convert-functions.R
tests/testthat/test-distance-functions.R
tests/testthat/test-galgo.R
tests/testthat/test-plot-functions.R
tests/testthat/test-results-function.R
vignettes/GSgalgoR.rmd
vignettes/GSgalgoR_callbacks.rmd
