Man pages for hbc/bcbioRnaseq
Bcbio RNA-Seq
| bcb | bcbio RNA-seq example data set |
| bcbioRNASeq | bcbio RNA-Seq data set |
| bcbioRNASeq-class | bcbio RNA-Seq data set |
| bcbioRNASeq-package | bcbioRNASeq |
| bcbioRnaSeqTestsUrl | Cache URL |
| bcbioRNASeqTestsURL | Cache URL |
| coerce | Methods for coercing an object to a class |
| counts | Counts |
| deprecated | Deprecated functions |
| extract | Extract or replace parts of an object |
| plot5Prime3PrimeBias | Plot 5' to 3' bias |
| plotCorrelationHeatmap | Correlation heatmap |
| plotCounts | Plot counts |
| plotCountsPerBiotype | Plot counts per biotype |
| plotCountsPerFeature | Plot counts per feature |
| plotDispEsts | Plot dispersion estimates |
| plotExonicMappingRate | Plot exonic mapping rate |
| plotFeatureSaturation | Plot feature (gene) detection saturation |
| plotGenderMarkers | Plot sexually dimorphic gender marker genes |
| plotIntronicMappingRate | Plot intronic mapping rate |
| plotMappedReads | Plot mapped reads |
| plotMappingRate | Plot mapping rate |
| plotMeanSd | Plot row standard deviations vs. row means |
| plotPca | Principal component analysis plot |
| plotPcaCovariates | Find correlation between principal components (PCs) and... |
| plotPseudoVsAlignedCounts | Plot pseudo vs. aligned counts |
| plotQc | Quality control |
| plotRrnaMappingRate | Plot ribosomal RNA (rRNA) mapping rate |
| plotTotalReads | Plot total reads |
| reexports | Objects exported from other packages |
| relativeLogExpression | Relative log expression |
| show | Show an object |
| slotAlignedCounts | Slot aligned counts |
| tmm | Trimmed mean of M-values |
| updateObject | Update object |
