README.md

In hcji/TarMet: Targeted Metabolic and Stable Isotope Tracer.

TarMet

TarMet is a shiny application for targeted metabolic analyses based on mass spectrometry.

In the future

1. Support data-independent acquisition.
2. Support MS/MS library verification.

Installation

install.packages(c("BiocManager", "rcdk", "tidyr", "devtools", "data.table", "enviPat", "Matrix", "shiny", "plotly"))
BiocManager::install("MassSpecWavelet")
BiocManager::install("mzR")

library(devtools)
install_github("hcji/TarMet")

Usage:

library(TarMet)
runTarMet()

A user guide is included in the package, Here is a gif of how to use the software.

Command line:

Detailed description of using TarMet with R scripts can be found Here and Here.

Contact

For any questions, please contact: [e-mail]

hcji/TarMet documentation built on Nov. 22, 2021, 1:07 p.m.