Description Usage Arguments Details Value Author(s) See Also Examples
Plot relative log-fold changes by exons for the specified gene and highlight the significantly spliced exons.
1 |
fit |
|
coef |
the coefficient (column) of fit for which differentially splicing is assessed. |
geneid |
character string, ID of the gene to plot. |
genecolname |
column name of |
rank |
integer, if |
FDR |
numeric, highlight exons as red dots with false discovery rate less than this cutoff. The FDR of the individual exon is calculated based on the exon-level t-statistics test for differences between each exon and all other exons for the same gene. |
Plot relative log2-fold-changes by exon for the specified gene.
The relative logFC is the difference between the exon's logFC and the overall logFC for the gene, as computed by diffSplice
.
The significantly spliced individual exons are highlighted as red dots. The size of the red dots are weighted by its significance.
A plot is created on the current graphics device.
Gordon Smyth and Yifang Hu
A summary of functions available in LIMMA for RNA-seq analysis is given in 11.RNAseq.
1 | # See diffSplice
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