API for hdsu-bioquant/ButchR
Non-Negative Matrix Factorization Suite

Global functions
#'	Man page
.onLoad	Source code
@param	Man page
ButchR_NMF	Man page
ButchR_NMF-class	Man page
ButchR_NMF.	Man page
ButchR_integrativeNMF	Man page
ButchR_integrativeNMF-class	Man page
ButchR_joinNMF	Man page
ButchR_joinNMF-class	Man page
FrobError	Man page
FrobError,ANY-method	Man page
FrobError,ButchR_NMF-method	Man page
FrobError,ButchR_integrativeNMF-method	Man page
FrobError,ButchR_joinNMF-method	Man page
HMatrix	Man page
HMatrix,ANY-method	Man page
HMatrix,ButchR_NMF-method	Man page
HMatrix,ButchR_integrativeNMF-method	Man page
HMatrix,ButchR_joinNMF-method	Man page
OptK	Man page
OptK,ButchR_NMF-method	Man page
OptKStats	Man page
OptKStats,ButchR_NMF-method	Man page
SignatureFeatures	Man page
SignatureFeatures,ANY-method	Man page
SignatureFeatures,ButchR_NMF-method	Man page
SignatureFeatures,ButchR_integrativeNMF-method	Man page
SignatureSpecificFeatures	Man page
SignatureSpecificFeatures,ANY-method	Man page
SignatureSpecificFeatures,ButchR_NMF-method	Man page
SignatureSpecificFeatures,ButchR_integrativeNMF-method	Man page
SignatureSpecificFeatures,ButchR_joinNMF-method	Man page
WMatrix	Man page
WMatrix,ANY-method	Man page
WMatrix,ButchR_NMF-method	Man page
WMatrix,ButchR_integrativeNMF-method	Man page
WMatrix,ButchR_joinNMF-method	Man page
WcomputeFeatureStats	Man page Source code
amariDistance	Man page Source code
an	Man page
auc	Man page Source code
class	Man page
compute_OptKStats_NMF	Man page Source code
compute_SignatureFeatures	Man page
compute_SignatureFeatures,ANY-method	Man page
compute_SignatureFeatures,ButchR_NMF-method	Man page
compute_SignatureFeatures,ButchR_integrativeNMF-method	Man page
compute_SignatureFeatures,ButchR_joinNMF-method	Man page
cosineDissMat	Man page Source code
generateRiverplot	Man page
generateRiverplot,ANY,ANY-method	Man page
generateRiverplot,ButchR_NMF-method	Man page
gg_plotKStats	Man page Source code
iNMF_lambda_tuning	Man page
leukemia	Man page
local.maxima	Source code
local.minima	Source code
nnls_sol	Man page Source code
normalizeH	Man page
normalizeH,ANY,ANY-method	Man page
normalizeH,ButchR_NMF-method	Man page
normalizeUpperQuartile	Man page Source code
normalizeW	Man page
normalizeW,ANY,ANY-method	Man page
normalizeW,ButchR_NMF-method	Man page
normalize_matrix_per_dim	Man page
object	Man page
of	Man page
orderBinary	Man page Source code
rankTransform	Man page Source code
recovery_plot	Man page
recovery_plot,ANY,ANY-method	Man page
recovery_plot,matrix-method	Man page
regularizeH	Man page
regularizeH,ANY,ANY-method	Man page
regularizeH,ButchR_NMF-method	Man page
relabelRiverplot	Man page Source code
reorderEdges	Man page Source code
run_NMF_tensor	Man page
run_iNMF_tensor	Man page
run_joinNMF_tensor	Man page
sigmoidTransform	Man page Source code
sigmoidTransform2	Man page Source code
source_NMFtensor_function	Man page Source code
val_graph_GRNMF_SC	Man page Source code
val_nonnegative_matrix	Man page Source code
val_positive_numeric	Man page Source code
val_ranks_torun	Man page Source code
val_single_boolean	Man page Source code
val_single_integer	Man page Source code
val_single_numeric	Man page Source code
x	Man page
yNodeCoords	Man page Source code