Files in hdsu-bioquant/ButchR
Non-Negative Matrix Factorization Suite

.Rbuildignore
.gitignore
.travis.yml
ButchR.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/data.R R/generics.R R/input_validation.R R/integrativeNMF-class.R R/integrativeNMF_functions.R R/joinNMF-class.R R/joinNMF_functions.R R/nmfExperiment-class_lite.R R/nmf_functions_lite.R R/plot_functions_lite.R R/preprocessing_functions.R README.md
data/leukemia.RData
inst/python/deprecated/intnmf_tensor.py
inst/python/deprecated/nmf_mult.py
inst/python/deprecated/nmf_tensor.py
inst/python/deprecated/tensor_jNMF.py
inst/python/tensorTheCleaver/nmf_tensor_lite.py
inst/python/tensorTheCleaver/nmf_tensor_regularized_lite.py
inst/python/tensorTheCleaver/tensor_iNMF_lite.py
inst/python/tensorTheCleaver/tensor_jNMF_lite.py
man/ButchR_NMF-class.Rd man/ButchR_integrativeNMF-class.Rd man/ButchR_joinNMF-class.Rd man/FrobError-methods.Rd man/HMatrix-methods.Rd man/OptK-ButchR_NMF-method.Rd man/OptK-methods.Rd man/OptKStats-ButchR_NMF-method.Rd man/OptKStats-methods.Rd man/SignatureFeatures-methods.Rd man/SignatureSpecificFeatures-methods.Rd man/WMatrix-methods.Rd man/WcomputeFeatureStats.Rd man/amariDistance.Rd man/auc.Rd man/compute_OptKStats_NMF.Rd man/compute_SignatureFeatures-methods.Rd man/cosineDissMat.Rd man/generateRiverplot-methods.Rd man/gg_plotKStats.Rd man/iNMF_lambda_tuning.Rd man/leukemia.Rd man/nnls_sol.Rd man/normalizeH-methods.Rd man/normalizeUpperQuartile.Rd man/normalizeW-methods.Rd man/normalize_matrix_per_dim.Rd man/orderBinary.Rd man/rankTransform.Rd man/recovery_plot-methods.Rd man/regularizeH-methods.Rd man/relabelRiverplot.Rd man/reorderEdges.Rd man/run_NMF_tensor.Rd man/run_iNMF_tensor.Rd man/run_joinNMF_tensor.Rd man/sigmoidTransform.Rd man/sigmoidTransform2.Rd man/source_NMFtensor_function.Rd man/val_graph_GRNMF_SC.Rd man/val_nonnegative_matrix.Rd man/val_positive_numeric.Rd man/val_ranks_torun.Rd man/val_single_boolean.Rd man/val_single_integer.Rd man/val_single_numeric.Rd man/yNodeCoords.Rd tests/testthat.R tests/testthat/test_aux_functions.R tests/testthat/test_iNMF.R tests/testthat/test_iNMF_badInput.R tests/testthat/test_iNMF_lambdatune.R tests/testthat/test_joinNMF.R tests/testthat/test_joinNMF_badInput.R tests/testthat/test_singleViewNMF.R tests/testthat/test_singleViewNMF_badInput.R vignettes/01_ButchR_leukemia_Golub.Rmd vignettes/02_ButchR_hematopoiesis_Corces.Rmd vignettes/03_ShinyButchR.Rmd
vignettes/figs/ButchR/ButchR_logo.png
vignettes/figs/ButchR/NMF.png
vignettes/figs/ButchR/hheatmap-1.png
vignettes/figs/ButchR/hheatmap-2.png
vignettes/figs/ButchR/hheatmap-3.png
vignettes/figs/ButchR/kstats-1.png
vignettes/figs/ButchR/wspecific-1.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_001.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_002.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_003.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_004.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_005.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_006.1.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_006.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_007.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_008.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_009.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_010.png
vignettes/figs/ShinyButchR_figs/ShinyButchR_011.png
hdsu-bioquant/ButchR documentation built on Jan. 28, 2023, 6:06 p.m.