Files in heibl/rpg
Multiple Sequence Alignment with PASTA and GUIDANCE
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/BPtree_from_MSA.R
R/DEV-mafft.R
R/HoT.R
R/HoT_in_GUIDANCE2.R
R/RcppExports.R
R/alignSubtree.R
R/cAAbin.R
R/centroidDecomposition.R
R/clustalo.R
R/clustalw2.R
R/co_optimalMSAs.R
R/compareMSAs.R
R/decomposePhyloRooted.R
R/dep/guidance-dep.R
R/dep/protein_sequences.R
R/equalSubtrees.R
R/guidance.R
R/guidance2.R
R/guidanceSA.R
R/merge.R
R/msaBP.R
R/muscle.R
R/pasta.R
R/phy_partitions.R
R/residue_score_heatmap.R
R/revers_Xbin.R
R/spanningTree.R
README.md
dev/.DS_Store
dev/00.R
dev/DEV-decomposePhylo.R
dev/DEV-guidance.R
dev/DEV-pasta.R
dev/compare_runtime.R
dev/data/AATF.fas
dev/data/base.msa_10.rda
dev/data/cortinarius_28s_ms.fas
dev/data/guide.msa_10.rda
dev/power.R
dev/semphy-DEV.R
dev/test.pdf
devworkspace.rda
doc/large_benchmark_sources
inst/extdata/BB30015.fasta
inst/extdata/BB50009.fasta
man/.Rapp.history
man/HoT.Rd
man/align_part_set.Rd
man/c.AAbin.Rd
man/centroidDecomposition.Rd
man/compareMSAs.Rd
man/confidence.heatmap.Rd
man/equalSubtrees.Rd
man/guidance.Rd
man/guidance2.Rd
man/hello.Rd
man/mafft2.Rd
man/msaBP.Rd
man/msaBP_nj_tree.Rd
man/partitions.Rd
man/pasta.Rd
man/rcpp_hello.Rd
man/rev_DNA.Rd
man/spanningTree.Rd
rpg.Rproj
src/.DS_Store
src/RcppExports.cpp
src/RcppExports.o
src/msa_set_score_src/count_functions.cpp
src/msa_set_score_src/defs.h
src/msa_set_score_src/makefile
src/msa_set_score_src/msa_functions.cpp
src/msa_set_score_src/msa_set_score
src/msa_set_score_src/msa_set_score.cpp
src/msa_set_score_src/set_functions.cpp
src/rcpp_hello.cpp
src/rcpp_hello.o
src/rpg.so
todo.txt
