bigtree: PDF of Large Phylogenies

In heibl/viper: VIsualitaion of Phylogenetics and Evolution with R

Description

Easily and quickly produce a PDF file showing a large phylogeny.

Usage

bigtree(phy, lo = 5, height = "auto", cex = 0.1, edge.label,
  view = TRUE, save = FALSE, file = "bigtree.pdf")

Arguments

phy	An object of class phylo.
lo	Numeric, giving the label offset.
height	Either "auto" or numeric giving the PDF height in inches.
cex	Numeric, giving the character expansion for the tip labels.
edge.label	A data.frame with two columns; the taxon names in the first column (taxon) are drawn on the edge numbers given by the second column (edge).
view	Logical, idicating if the PDF should be opened immediately in the standard PDF viewer.
save	Logical, indicating if the PDF file should be written to file.
file	A character string giving the filename; only has an effect if save = TRUE.

Value

None.

See Also

plot.phylo

Examples

tr <- rtree(1000)
bigtree(tr, save = FALSE)

heibl/viper documentation built on May 21, 2019, 10:47 a.m.