plotColorOverlap: plotColorOverlap

In heilandd/SPATAwrappers: What the Package Does (One Line, Title Case)

plotColorOverlap

Description

Plot overlap (Adopted from the Seurat Package)

Usage

plotColorOverlap(
  object,
  feature1,
  feature2,
  pt_size = 3,
  get.map = F,
  as.layer = F,
  two.colors = c("purple", "lightgreen"),
  negative.color = "darkgrey",
  col.threshold = 0.8,
  smooth = T,
  smooth_span = 0.2,
  normalize = T
)

Arguments

object	SPATA2 object
feature1	Character value. feature or gene to plot
feature2	Character value. feature or gene to plot
pt_size	Numeric value. Specifies the size of all points.
get.map	Logical.If TRUE plot only the color map
as.layer	Logical.If TRUE plot only return gglayer
two.colors	Character value, two colors
negative.color	Character value, negative color
col.threshold	Balance the colors
smooth	Logical. If TRUE, a loess fit is used to smooth the values.
smooth_span	Numeric value. Controls the degree of smoothing. Given to argument span of stats::loess().
normalize	Normalize Values

Author(s)

Dieter Henrik Heiland

heilandd/SPATAwrappers documentation built on Oct. 2, 2022, 1:40 p.m.