API for helen-zhu/ConsensusPeaks
A Method for Peak Merging And Distribution Fitting Across Biological Replicates
| Global functions | |
|---|---|
| %||% | Man page |
| .bed6tobed12 | Source code |
| .generate.null.result | Source code |
| .get.gene.anno | Source code |
| .merge.p | Source code |
| .retrieve.peaks.as.granges | Source code |
| .rna.peaks.to.genome | Source code |
| ConsensusPeaks | Man page Source code |
| `%||%` | Source code |
| bpg.plot | Source code |
| calculate.density | Source code |
| dnorm_mixture | Source code |
| dput.str | Source code |
| dtgamma | Source code |
| dtgamma_flip | Source code |
| extract.distribution.parameters | Source code |
| find.peaks | Source code |
| find.uniform.segment | Source code |
| find_peaks | Source code |
| fit.continuous.distributions | Source code |
| fit.distributions.optim | Source code |
| fit.residuals | Source code |
| fit.residuals.threshold.unif | Source code |
| ftc | Source code |
| ftc.helen | Source code |
| gene.coverage.hist | Man page |
| generate.peaks.from.split.points | Source code |
| generate.unif | Source code |
| ggplot.plot | Source code |
| grenader | Source code |
| hist.optim.plot | Source code |
| hist.optim.plot.all | Source code |
| histogram.chisq | Source code |
| histogram.intersection | Source code |
| histogram.jaccard | Source code |
| histogram.ks | Source code |
| histogram.mse | Source code |
| identify.uniform.segments | Source code |
| local.max | Source code |
| local.min | Source code |
| local.minmax | Man page Source code |
| max.entropy | Source code |
| monotone.cost | Source code |
| obs.to.int.hist | Source code |
| plot.gene.peaks | Man page Source code |
| plot.segments | Source code |
| ptgamma | Source code |
| ptgamma_flip | Source code |
| qtgamma | Source code |
| qtgamma_flip | Source code |
| read.gtf | Man page Source code |
| rel.entropy | Source code |
| rtgamma | Source code |
| rtgamma_flip | Source code |
| segment.and.fit | Man page Source code |
| simulate.gaussian.peaks | Man page Source code |
| str.match | Man page Source code |
| union.peaks | Source code |
