Man pages for hemberg-lab/scmap
A tool for unsupervised projection of single cell RNA-seq data
| ann | Cell type annotations for data extracted from a publication... |
| EuclSqNorm | The Euclidean Squared Norm of each column of a matrix is... |
| getSankey | Plot Sankey diagram comparing two clusterings |
| indexCell | Create an index for a dataset to enable fast approximate... |
| indexCluster | Create a precomputed Reference |
| NN | Main nearest neighbour calculation function. Used on the... |
| normalise | Normalises each column of a matrix |
| scmapCell | For each cell in a query dataset, we search for the nearest... |
| scmapCell2Cluster | Approximate k-NN cell-type classification using scfinemap |
| scmapCluster | scmap main function |
| selectFeatures | Find the most informative features (genes/transcripts) for... |
| setFeatures | Set the most important features (genes/transcripts) for... |
| subdistsmult | Computes the dot product between the subcentroids from the... |
| yan | Single cell RNA-Seq data extracted from a publication by Yan... |
