Man pages for hemberg-lab/scmap
A tool for unsupervised projection of single cell RNA-seq data

annCell type annotations for data extracted from a publication...
createReferenceCreate a precomputed Reference
EuclSqNormThe Euclidean Squared Norm of each column of a matrix is...
getFeaturesFind the most informative features (genes/transcripts) for...
getSankeyPlot Sankey diagram comparing two clusterings
mult_searchFor each cell in a query dataset, we search for the nearest...
NNfirstMain nearest neighbour calculation function. Used on the...
NNmultPerforms the same operations as NNfirst, but for subsequent...
normaliseNormalises each column of a matrix
projectDatascmap main function
scf_celltypeApproximate k-NN cell-type classification using scfinemap
scf_indexCreate an index for a dataset to enable fast approximate...
setFeaturesSet the most important features (genes/transcripts) for...
subdistsmultComputes the dot product between the subcentroids from the...
yanSingle cell RNA-Seq data extracted from a publication by Yan...
hemberg-lab/scmap documentation built on Nov. 21, 2017, 11:55 p.m.