networkEfficiency: Conduct simulated network crosstalk inhibition and prune...
In hemoshear/pathwayTalk:
View source: R/crosstalkInhibition.R
networkEfficiency R Documentation
Conduct simulated network crosstalk inhibition and prune network.
Description
Given a network, calculate the network efficiency. Iterate over
network edges and conduct simulated network crosstalk inhibition, pruning the network
of edges that do not contribute to network efficiency.
Usage
networkEfficiency(network)
Arguments
network
An igraph object in which the nodes represent enriched pathways and
the edges represent significant pathway crosstalks. The output of crosstalkNetwork().
Value
Returns a named list.
full_network - An igraph object representing the full
network of top-performing pathway pairs.
full_network_results - A dataframe describing the full network.
pruned_network - An igraph object representing the pruned
network of top-performing pathway pairs.
pruned_network_results - A dataframe describing the pruned network.
hemoshear/pathwayTalk documentation built on July 16, 2022, 12:09 a.m.
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View source: R/crosstalkInhibition.R
| networkEfficiency | R Documentation |
Conduct simulated network crosstalk inhibition and prune network.
Description
Given a network, calculate the network efficiency. Iterate over network edges and conduct simulated network crosstalk inhibition, pruning the network of edges that do not contribute to network efficiency.
Usage
networkEfficiency(network)
Arguments
network |
An igraph object in which the nodes represent enriched pathways and the edges represent significant pathway crosstalks. The output of crosstalkNetwork(). |
Value
Returns a named list.
full_network - An igraph object representing the full network of top-performing pathway pairs.
full_network_results - A dataframe describing the full network.
pruned_network - An igraph object representing the pruned network of top-performing pathway pairs.
pruned_network_results - A dataframe describing the pruned network.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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