importDIAresults: importDIAresults

In heuselm/igseqr: Integrate MiXCR BCR/IG-Seq and DIA-MS data to profile immune repertoire evolution

importDIAresults

Description

import DIA-MS quantitative results from Spectronaut

Usage

importDIAresults(report_location, study_design = NULL)

Arguments

report_location	path to the Spectronaut report (Factory default)
study_design	alternative study design to use, data.table of filename, condition, replicate. If not provided, an attempt will be made to extract the study design from the imported DIA results.

Value

DIA_resultset object (list) with data_long - data.table of the report data_wide - data.table of Protein.Group+Precursor.Id over the Ms runs/R.FileName study_design - study design table of filename, condition, replicate overview - analysis overview from SN settings - settings file

heuselm/igseqr documentation built on March 19, 2022, 7:28 p.m.