API for hexhead/Rinbix
Insilico Bioinformatics for R

Global functions
adjacencyMatrixToChordDiagram Source code
adjacencyToNetList Source code
classifyConfusionMatrix Source code
classifyOneVarWeka Source code
classifyPairWeka Source code
classifyPredictFold Source code
classifyPredictedValues Source code
classifyRnaseq Source code
createDiffCoexpMatrix Source code
createDiffCoexpMatrixNoME Source code
createDiffCoexpMatrixNull Source code
createMainEffectsMatrix Source code
createRandomMatrix Source code
createRandomRegressionDataset Man page Source code
crossValidate Source code
dcgain Man page Source code
dcgainInbix Source code
dmgain Man page Source code
filterRnaseq Source code
fisherRtoZ Man page Source code
fitInteractionModel Source code
fitMainEffectModel Source code
gainToSimpleSIF Source code
geneLowCoefOfVarFilter Source code
geneLowValueFilter Source code
geneLowVarianceFilter Source code
geneRank Source code
geneSymbolToEntrezID Source code
getFoldChange Source code
getFoldChangeME Source code
getGOAnalysis Source code
getIGraphStats Source code
getInteractionEffects Man page Source code
getMainEffects Man page Source code
getReactomePathways Source code
glmMainEffect Source code
glmVarList Source code
glmWithInteractionTerm Source code
glmWithSquaredTerms Source code
igraphToChordDiagram Source code
inbixExists Source code
leftMaxEigen1 Source code
leftMaxEigen2 Source code
leftMaxEigen3 Source code
loadRipmResultsFromRdata Source code
logSpiral Source code
lookupGeneDescBiomart Source code
lookupGenesFromEnsemblIds Source code
mapSNPsToGenesBiomart Source code
mergeSumPowers Source code
modularity Man page Source code
modularityBestSplit Man page Source code
modularityInbix Source code
netListToForceD3 Source code
netListToSimpleD3 Source code
onAttach Source code
permuteGainInbix Source code
predictRnaseq Source code
prepareAdjacencyMatrix Source code
preprocessRnaseq Source code
printIGraphStats Source code
r2VIMorig Source code
randomNetworkSim Source code
rankDcgainSnprank Source code
rankDeseq Source code
rankDeseq2 Source code
rankEdgeR Source code
rankEdgeRGlm Source code
rankGeneRank Source code
rankGlmnet Source code
rankIterativeRelieff Source code
rankLasso Source code
rankLimma Source code
rankRandomForest Source code
rankRegainSnprank Source code
rankReliefSeqInbix Source code
rankRelieff Source code
rankSam Source code
rankTTest Source code
rankUnivariateRegression Man page Source code
readInbixNumericAsRegressionData Man page Source code
readPlinkBinary Source code
regain Source code
regainInbix Source code
regainParallel Man page Source code
ripM Source code
ripMKernelStack Source code
ripmVariableModuleAssignments Source code
saveModuleListGmt Source code
saveRipmModules Source code
saveRipmResultsToRdata Source code
scaleAB Source code
scaleFreeSim Source code
simCorrMatrix Source code
simCorrMatrixNonUniform Source code
snprank Man page Source code
snprankInbix Source code
sumOfPowers Source code
testdata10 Man page
writeRegressionDataAsInbixNumeric Man page Source code
hexhead/Rinbix documentation built on July 13, 2017, 2:20 p.m.