IRSAL: IRSAL

In hferg/EMMLiv2: A Maximum Likelihood Approach to the Analysis of Modularity

Description

IRSAL

Usage

IRSAL(atlas, landmarks, initial_fixed, n, reps, write.out = FALSE,
  sp = NULL, maxit = 50, ...)

Arguments

atlas	object of class "atlas" created by createAtlas
landmarks	k x 3 x n array containing reference landmarks of the sample or a matrix in case of only one target specimen.
initial_fixed	The fixed points for the initial placePatch analysis.
n	The number of patched points to use in each iteration of IRSAL.
reps	The number of times to repeat the IRSAL procedure.
write.out	If TRUE then the patched points from each iteration, for each species, will be written to the working directory. This will NOT include the temporary anchor points.
sp	If write.out is true, then this determines which species is written out. Defaults to 1 (the first species in the dataset). 2 would be the second species in the dataset etc.
maxit	The maximum number of attempts to find improved bending energy.
...	Additonal arguments passed to placePatch

hferg/EMMLiv2 documentation built on May 28, 2019, 8:55 p.m.