check_sex: Infer the sex of sample donor
In hhhh5/ewastools: EWAS Tools
check_sex R Documentation
Infer the sex of sample donor
Description
Return the normalized average total intensities of probes targeting the X and Y chromosomes.
Usage
check_sex(raw)
predict_sex(X, Y, male, female)
Arguments
raw
Output of calling read_idats
X, Y
Forwarded from check_sex
male, female
Indices of male and female samples
Value
check_sex returns the normalized average total intensities of probes targeting the X and Y chromosomes. These are forwarded to predict_sex which returns a factor with levels "f","m" (and NA if the sex cannot be determined conclusively).
hhhh5/ewastools documentation built on Feb. 7, 2024, 6:21 p.m.
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| check_sex | R Documentation |
Infer the sex of sample donor
Description
Return the normalized average total intensities of probes targeting the X and Y chromosomes.
Usage
check_sex(raw)
predict_sex(X, Y, male, female)
Arguments
raw |
Output of calling |
X, Y |
Forwarded from |
male, female |
Indices of male and female samples |
Value
check_sex returns the normalized average total intensities of probes targeting the X and Y chromosomes. These are forwarded to predict_sex which returns a factor with levels "f","m" (and NA if the sex cannot be determined conclusively).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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