control_metrics: Quality control metrics

In hhhh5/ewastools_releases: EWAS Tools

Quality control metrics

Description

Calculate the QC metrics as described in the 'BeadArray Controls Reporter Software Guide' from Illumina.

Usage

control_metrics(raw)

sample_failure(metrics)

Arguments

raw	Output of calling read_idats
metrics	Output of callling control_metrics

Value

For control_metrics, a list of 17 control metrics, each one a numeric vector equal in length to the sample size

For sample_failure, a logical vector, TRUE if sample at corresponding index failed on any of the 17 control metrics.

Note

You can download the Software Guide at https://support.illumina.com/downloads/beadarray-controls-reporter-software-guide-1000000004009.html

hhhh5/ewastools_releases documentation built on Feb. 7, 2024, 2:57 a.m.