Model-Based Comparative Analysis of the TCR Repertoire

Accessors | Grab important output from a list of fits |

clusterPlot | Visualize hierarchical clustering of samples |

discgammagpd | The discrete gamma-GPD spliced threshold distribution |

fdesponds | Fit the type-I Pareto distribution as according to Desponds... |

fdiscgammagpd | Fit the discrete gamma-GPD spliced threshold model |

get_bootstraps | Get bootstrapped fits for a list of fitted models |

get_distances | Compute matrix of pairwise Jensen-Shannon Distances |

JS_desponds | Compute the Jensen-Shannon distance between two fitted... |

JS_dist | Compute the Jensen-Shannon distance between two model fits |

JS_spliced | Compute the Jensen-Shannon distance between two fitted... |

parse | Load in and parse TCR data files for use by powerTCR |

repertoires | Two toy examples of sample TCR repertoires. |

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