ggplot2: Prestored settings and functions related to ggplot2 or plots

In hiplot/hiplotlib: Native Plugin Backend of Hiplot Platform

Prestored settings and functions related to ggplot2 or plots

Description

Prestored settings and functions related to ggplot2 or plots

Usage

cb_palette

ggsci_palette_names

ggsci_palette_length

brewer_palette_names

prism_palette_names

graf_palette_names

ggplot2_themes

ggplot2_themes2

choose_ggplot_theme(p, theme = "theme_bw")

return_ggplot_theme(theme = "theme_bw")

position_type(label = c("dodge", "fill", "stack"))

set_palette_theme(p, conf = globs_get("conf"))

set_complex_general_theme(p, conf = globs_get("conf"))

return_hiplot_palette(u, custom = NULL)

return_hiplot_palette_color(u, custom = NULL)

get_hiplot_color(u, n = -1, custom = NULL)

gg_color_default(n)

brewer_pal_update(n, panel = "Set3")

transparentColor(col, alpha = 200)

custom_color_filter(cols)

alter_fun(x, y, w, h, v)

col_fun_cont(
  x,
  cols = c("#196ABD", "#3399FF", "#3399FF", "#f4f4f4", "#f4f4f4", "#f4f4f4", "#FF3333",
    "#FF3333", "#C20B01")
)

col_tag

mut_cols

draw_map(rds, keyname, filter_names = NULL)

Arguments

p	a ggplot object.
theme	a string specifying theme.
label	a position label, one of 'dodge', 'fill' and 'stack'.
conf	a conf object, see .conf.
u	one of a predefined palette name. See ggsci_palette_names, brewer_palette_names, prism_palette_names, etc.
custom	a user specified custom color vector.
n	number of colors.
panel	defines the color panel you want
col	a color.
alpha	a alpha value.
cols	colors.
x, y, w, h, v	a set of parameters passing to grid::grid.rect.
rds	a file storing in the format of .RDS.
keyname	a keyname to plot.
filter_names	used for filtering.

Format

An object of class character of length 37.

An object of class character of length 16.

An object of class numeric of length 16.

An object of class character of length 9.

An object of class character of length 65.

An object of class character of length 3.

An object of class character of length 50.

An object of class list of length 6.

An object of class character of length 2.

An object of class character of length 30.

Functions

• cb_palette: A vector of colors

• ggsci_palette_names: A vector of ggsci palette names

• ggsci_palette_length: Maximum color number provided by palette of ggsci_palette_names

• brewer_palette_names: A vector of RColorBrewer palette names

• prism_palette_names: A vector of prism palette names

• graf_palette_names: A vector of graf palette names

• ggplot2_themes: A vector of ggplot2 themes

• ggplot2_themes2: A list of ggplot2 themes

• choose_ggplot_theme(): Set ggplot2 theme for a ggplot object

• return_ggplot_theme(): Return ggplot2 theme based on string

• position_type(): Return position type

• set_palette_theme(): Set palette and theme from conf for a ggplot object

• set_complex_general_theme(): Set complex general theme from conf for a ggplot object

• return_hiplot_palette(): Return ggplot2 scale of fill palette with predefined or custom colors

• return_hiplot_palette_color(): Return ggplot2 scale of color palette with predefined or custom colors, similar to return_hiplot_palette

• get_hiplot_color(): Get colors from a color palette

• gg_color_default(): A color generator for default colors in ggplot

• brewer_pal_update(): An update version of brew.pal function

• transparentColor(): Transparent colors

• custom_color_filter(): A custom color filter

• alter_fun(): A alter_fun used in ComplexHeatmap

• col_fun_cont(): A color function used in ComplexHeatmap

• col_tag: A col_tag used in ComplexHeatmap (TODO: make sure)

• mut_cols: A mapping between mutation type and colors used in ComplexHeatmap (TODO: make sure)

• draw_map(): Draw a Map

Examples

transparentColor("red")
custom_color_filter("AAAAAA, CCCCCC")

hiplot/hiplotlib documentation built on Jan. 31, 2024, 10:11 a.m.