featureCounts2DGEList: Convert featureCounts object to a DGEList
In hiraksarkar/edgeR_fork: Empirical Analysis of Digital Gene Expression Data in R

Description Usage Arguments Details Value Author(s) See Also

Converts the list output by Rsubread::featureCounts to a DGEList object.

1	featureCounts2DGEList(x)

`x`	a list produced by `Rsubread::featureCounts.`

Rsubread's featureCounts function counts reads by features (typically exons or genomic intervals) or meta-features (typically genes). It may also count reads crossing exon-exon junctions or reads internal to exons. This function assembles all the read counts output by featureCounts into an DGEList, ensuring unique row.names where appropriate. The proportion of reads assigned to features is also stored.

A DGEList data object.

Gordon Smyth.

DGEList-class

hiraksarkar/edgeR_fork documentation built on Dec. 20, 2021, 3:52 p.m.