hk1785/OMiAT: Optimal Microbiome-based Association Test (OMiAT)

This software package provides facilities for 1) optimal microbiome-based association test (OMiAT) to test the association for the entire community (e.g., kingdom) or indivisual upper-level taxa (e.g., phylum, class, order, family, and genus) and 2) microbiome comprehensive association mapping (MiCAM) to test the association for all microbial taxa through a breadth of taxonomic ranks (e.g., kingdom, phylum, class, order, family, genus, and species). Continuous/binary traits (either health/disease outcomes or medical interventions) can be surveyed with/without covariate adjustments (e.g., age and sex).

Getting started

Package details

AuthorHyunwook Koh, Martin J. Blaser, and Huilin Li
MaintainerHyunwook Koh <[email protected]>
LicenseGPL-2
Version5.3
URL https://sites.google.com/site/huilinli09/software and https://github.com/hk1785/OMiAT
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("hk1785/OMiAT")
hk1785/OMiAT documentation built on May 17, 2019, 3:59 p.m.