get_tx2gene: Get transcript to gene map.

In hms-dbmi/drugseqr.data: Data for 'dseqr' and 'rkal' Packages

Get transcript to gene map.

Description

Get transcript to gene map.

Usage

get_tx2gene(
  species = "Homo sapiens",
  release = "103",
  with_hgnc = FALSE,
  columns = c("tx_id", "gene_name", "entrezid", "gene_id", "seq_name", "description")
)

Arguments

species	Character vector indicating species. Genus and species should be space separated, not underscore. Default is 'Homo sapiens'.
release	EnsemblDB release. Should be same as used in build_kallisto_index.
columns	Character vector of columns from ensdb package to return or 'list' to print available options.

Value

data.frame with columns tx_id, gene_name, and entrezid

Examples

# tx2gene <- get_tx2gene()

hms-dbmi/drugseqr.data documentation built on Oct. 23, 2024, 10:28 p.m.