load_data: Load drug effect size and Azimuth reference data

In hms-dbmi/dseqr.data: Data for 'dseqr' and 'rkal' Packages

Load drug effect size and Azimuth reference data

Description

Downloads requested file if not done so previously.

Usage

load_data(
  file = c("cmap_es_ind.qs", "l1000_drugs_es.qs", "l1000_genes_es.qs", "human_pbmc.qs")
)

Arguments

file	Character vector of drug effect size datasets to load. One of: * ''cmap_es_ind.qs'' - CMAP02 * ''l1000_drugs_es.qs'' - L1000 compounds * ''l1000_genes_es.qs'' - L1000 genetic perturbations * ''human_pbmc.qs'' - Azimuth human PBMC reference

Value

data.frame of expression values. Rows are genes, columns are perturbations.

Examples

# dummy example (actual files are large)
load_drug_es("example.qs")

hms-dbmi/dseqr.data documentation built on Oct. 25, 2024, 4:10 p.m.