tests/testthat/_snaps/Dictionary.md

In hms-dbmi/pic-sure-biodatacatalyst-r-adapter-hpds: Simplified R library to communicate with HPDS-hosted services on the BioData Catalyst network

getKeyInfo(): should return correctly formatted list of phenotype data

Code
  result
Output
  $name
  [1] "\\phs000001\\pht000001\\phv00000001\\test\\"

  $HpdsDataType
  [1] "phenotype"

  $categorical
  [1] FALSE

  $categoryValues
  list()

  $min
  [1] 0

  $max
  [1] 5

  $description
  [1] ""

getKeyInfo(): should return correctly formatted list of genotype data

Code
  result
Output
  $name
  [1] "A_Variant"

  $HpdsDataType
  [1] "info"

  $categorical
  [1] TRUE

  $categoryValues
  $categoryValues[[1]]
  [1] "ABC"

  $categoryValues[[2]]
  [1] "DEF"


  $min
  [1] NA

  $max
  [1] NA

  $description
  [1] "A proper testing description."

genotypeAnnotations(): should return correctly formatted genomic annotations

Code
  annotations
Output
    genomic_annotation                   description   values continuous
  1          A_Variant A proper testing description. ABC, DEF      FALSE

genotypeAnnotations(): should send api call with blank query

Code
  toString(query)
Output
  [1] "{\"query\":\"\"}"

find(): should send correctly formatted json api call

Code
  toString(query)
Output
  [1] "{\"query\":{\"searchTerm\":\"clouds\",\"includedTags\":[],\"excludedTags\":[],\"returnTags\":true,\"offset\":0,\"limit\":10}}"

hms-dbmi/pic-sure-biodatacatalyst-r-adapter-hpds documentation built on Sept. 24, 2022, 9:24 a.m.