tests/testthat/_snaps/DictionaryResult.md

In hms-dbmi/pic-sure-biodatacatalyst-r-adapter-hpds: Simplified R library to communicate with HPDS-hosted services on the BioData Catalyst network

entries(): should return correctly formatted categorical results

Code
  dictionaryResults$entries()
Output
  [[1]]
  [[1]]$var_id
  [1] "phv00000001.v1"

  [[1]]$var_name
  [1] "test_variable_cat"

  [[1]]$var_description
  [1] "This is a categorical test variable"

  [[1]]$data_type
  [1] "categorical"

  [[1]]$group_id
  [1] "categorical group id"

  [[1]]$group_name
  [1] "categorical group name"

  [[1]]$group_description
  [1] "categorical group description"

  [[1]]$study_id
  [1] "categorical study id"

  [[1]]$study_description
  [1] "categorical study description"

  [[1]]$is_stigmatized
  [1] FALSE

  [[1]]$HPDS_PATH
  [1] "\\phs000001\\pht0000001\\phv00000001\\test_variable_cat\\"

  [[1]]$min
  [1] NA

  [[1]]$max
  [1] NA

  [[1]]$values
  [1] "ABC, DEF, GHI"

entries(): should return correctly formatted continuous results

Code
  dictionaryResults$entries()
Output
  [[1]]
  [[1]]$var_id
  [1] "phv00000002.v1"

  [[1]]$var_name
  [1] "test_variable_cont"

  [[1]]$var_description
  [1] "This is a continuous test variable"

  [[1]]$data_type
  [1] "continuous"

  [[1]]$group_id
  [1] "continuous group id"

  [[1]]$group_name
  [1] "continuous group name"

  [[1]]$group_description
  [1] "continuous group description"

  [[1]]$study_id
  [1] "continuous study id"

  [[1]]$study_description
  [1] "continuous study description"

  [[1]]$is_stigmatized
  [1] FALSE

  [[1]]$HPDS_PATH
  [1] "\\phs000002\\pht0000001\\phv00000001\\test_variable_cont\\"

  [[1]]$min
  [1] 1

  [[1]]$max
  [1] 5

  [[1]]$values
  [1] ""

varInfo(): should return correctly formatted variable information for matching path

Code
  info
Output
                    \\phs000001\\pht0000001\\phv00000001\\test_variable_cat\\
  var_id                                                       phv00000001.v1
  var_name                                                  test_variable_cat
  var_description                         This is a categorical test variable
  data_type                                                       categorical
  group_id                                               categorical group id
  group_name                                           categorical group name
  group_description                             categorical group description
  study_id                                               categorical study id
  study_description                             categorical study description
  is_stigmatized                                                        FALSE
  HPDS_PATH         \\phs000001\\pht0000001\\phv00000001\\test_variable_cat\\
  min                                                                    <NA>
  max                                                                    <NA>
  values                                                        ABC, DEF, GHI

paths(): should return all paths in scope

Code
  dictionaryResults$paths()
Output
  [1] "\\phs000001\\pht0000001\\phv00000001\\test_variable_cat\\"

dataframe(): should return correctly formatted results

Code
  dictionaryResults$dataframe()
Output
            var_id           var_name                     var_description
  1 phv00000001.v1  test_variable_cat This is a categorical test variable
  2 phv00000002.v1 test_variable_cont  This is a continuous test variable
      data_type             group_id             group_name
  1 categorical categorical group id categorical group name
  2  continuous  continuous group id  continuous group name
                group_description             study_id
  1 categorical group description categorical study id
  2  continuous group description  continuous study id
                study_description is_stigmatized
  1 categorical study description          FALSE
  2  continuous study description          FALSE
                                                     HPDS_PATH min max
  1  \\phs000001\\pht0000001\\phv00000001\\test_variable_cat\\  NA  NA
  2 \\phs000002\\pht0000001\\phv00000001\\test_variable_cont\\   1   5
           values
  1 ABC, DEF, GHI
  2

dataframe(): should return an empty frame if no search results were found

Code
  dictionaryResults$dataframe()
Output
  data frame with 0 columns and 0 rows

hms-dbmi/pic-sure-biodatacatalyst-r-adapter-hpds documentation built on Sept. 24, 2022, 9:24 a.m.