Man pages for hms-dbmi/sandboxR
Create Sandboxes of Phenotypics Data From dbGap
| browse.dbgap | Open the dbGap webpag of your study in your browser |
| browse.study | Open the study webpage in a web browser |
| consent.groups | Gets you the list of the consent groups of the study |
| datatables.dict | Create a tables dictionnary of your study |
| dbgap.data_dict | Create a table dictionnary and a variable dictionnary |
| dbgap.decrypt | Decrypt ncbi_enc files |
| dbgap.download | Decrypt ncbi_enc files |
| dbgap.expand | De-aggregate the variable in the datatables and create the... |
| dl.nhanes | nhanes |
| is.parent | Is the study a parent or a child study |
| list.oldmaps | Get the list of the saved old maps |
| look.oldmap | View an old mapping file on R |
| MapToTree | Change the structure of your tree folder using your mapping... |
| n.pop | Gets the population number of the study |
| n.tables | Gets the number of phenotypic datatables in the study |
| n.variables | Gets the number of phenotypic variables in the study |
| parent.study | Gets you the parent study of the specified study |
| phs.version | Gets you the full dbGap study ID of your study, with the... |
| recover.map | Change the structure of your tree folder using an old mapping... |
| search.dbgap | Open the results of your search on dbGap |
| study.name | Gets you the full name of the study on dbGap |
| sub.study | Gives the substudies associated with the one selected |
| table.expand | De-aggregate the variable in the datatables and create the... |
| TreeToMap | Change your mapping file according to the tree structure |
| variables.dict | Create a variables dictionnary of your study |
