coralPlotBeta: coralPlotBeta

In hmsc-r/HMSC: Hierarchical Model of Species Communities

coralPlotBeta

Description

Plots summary of Beta coefficents fitted with CORAL approach

Usage

coralPlotBeta(
  mu,
  V,
  phyloTree,
  spNames.common,
  plotColumns = c(1:ncol(mu)),
  quantile.support = c(0.05, 0.95),
  plotTree = 0.3,
  seed = NULL,
  col.common = c("blue", "red"),
  alpha.common = 0.5,
  jitter.common = 0.45,
  cex.common = 0.5,
  pch.common = 16,
  col.rare = c("cyan", "pink"),
  alpha.rare = 0.5,
  jitter.rare = 0.2,
  cex.rare = 0.2,
  pch.rare = 16,
  showCovNames = TRUE
)

Arguments

m	fitted Hmsc-class object
muList.coral	arg2
VList.coral	arg3

Value

list with combined means and covariance matrices

hmsc-r/HMSC documentation built on March 5, 2025, 10:52 p.m.