Files in hoehna/TESS
Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/RcppExports.R
R/tess.PathSampling.R
R/tess.PosteriorPrediction.R
R/tess.PosteriorPredictiveTest.R
R/tess.SteppingStoneSampling.R
R/tess.analysis.R
R/tess.analysis.efbd.R
R/tess.branching.times.R
R/tess.equations.R
R/tess.likelihood.R
R/tess.likelihood.bdstp.R
R/tess.likelihood.ebdstp.R
R/tess.likelihood.efbd.R
R/tess.likelihood.rateshift.R
R/tess.mcmc.R
R/tess.nTaxa.expected.R
R/tess.plot.multichain.diagnostics.R
R/tess.plot.output.R
R/tess.plot.singlechain.diagnostics.R
R/tess.process.output.R
R/tess.sim.age.R
R/tess.sim.taxa.R
R/tess.sim.taxa.age.R
R/tess.utilities.R
README.md
data/cettiidae.rda
data/conifers.rda
data/mammalia.rda
docs/Bayesian_Diversification_Rate_Analysis.pdf
docs/manual.pdf
inst/CITATION
man/TESS-package.Rd
man/cettiidae.Rd
man/conifers.Rd
man/mammalia.Rd
man/tess.PosteriorPrediction.Rd
man/tess.PosteriorPredictiveTest.Rd
man/tess.analysis.Rd
man/tess.analysis.efbd.Rd
man/tess.branching.times.Rd
man/tess.likelihood.Rd
man/tess.likelihood.bdstp.Rd
man/tess.likelihood.ebdstp.Rd
man/tess.likelihood.efbd.Rd
man/tess.likelihood.rateshift.Rd
man/tess.mcmc.Rd
man/tess.nTaxa.expected.Rd
man/tess.pathSampling.Rd
man/tess.plot.multichain.diagnostics.Rd
man/tess.plot.output.Rd
man/tess.plot.singlechain.diagnostics.Rd
man/tess.process.output.Rd
man/tess.sim.age.Rd
man/tess.sim.taxa.Rd
man/tess.sim.taxa.age.Rd
man/tess.steppingStoneSampling.Rd
src/RcppExports.cpp
src/mass_extinction_equations.cpp
src/symbols.rds
tests/testthat.R
tests/testthat/test-tess.likelihood.ebdstp.R
