Files in holaanna/contactsimulator
Contact model simulator
.Rbuildignore
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DESCRIPTION
NAMESPACE
R/Conf_band.R
R/RcppExports.R
R/builder.R
R/clean_names.R
R/contact.R
R/contact_class.R
R/contact_fun.R
R/contact_methods.R
R/contact_plot.R
R/contactsimulator-package.R
R/control_alternative.R
R/control_alternative_v0.R
R/control_baseline.R
R/control_baseline_v0.R
R/cppsnippet.R
R/generics.R
R/hello.R
R/nsimulations.R
R/rsnippet.R
R/simulate.R
R/simulate_example.R
R/simulation.R
R/simulation_africa_landscape.R
R/simulation_contact.R
R/simulation_control.R
R/simulation_control_cyclic.R
R/simulation_control_cyclic_v1.R
R/simulation_control_gavin.R
R/simulation_control_gavin_obs.R
R/simulation_control_v0.R
R/simulation_control_weibul.R
R/trajectory.R
README.md
config.log
config.status
configure
configure.ac
contactsimulator.Rproj
data/Dat_obs.rda
data/Param.rda
data/Param1.rda
data/Param2.rda
data/bbtv.rda
data/grid_line.rda
data/grid_lines.rda
data/rast2.rda
examples/africa_landscape_example.R
examples/grid_example.R
examples/leaf_emergence_rate.R
examples/plantation_example.R
examples/simple-example.R
inst/REFERENCES.bib
inst/external/Allen 1986.pdf
inst/external/backy.txt
inst/external/farm.txt
inst/external/rast_NSW_500.tif
inst/external/rast_SEQ.tif
inst/external/rast_SEQ1_500.tif
inst/external/rast_SEQ_1000.tif
inst/external/rast_SEQ_2000.tif
inst/external/rast_SEQ_3000.tif
inst/external/rast_SEQ_4000.tif
inst/external/rast_SEQ_500.tif
inst/external/rast_SEQ_5000.tif
inst/external/rast_backy_NSW_500.tif
inst/external/rast_backy_SEQ.tif
inst/external/rast_backy_SEQ1_500.tif
inst/external/rast_backy_SEQ_1000.tif
inst/external/rast_backy_SEQ_2000.tif
inst/external/rast_backy_SEQ_3000.tif
inst/external/rast_backy_SEQ_4000.tif
inst/external/rast_backy_SEQ_500.tif
inst/external/rast_backy_SEQ_5000.tif
inst/external/rast_farms_NSW_500.tif
inst/external/rast_farms_SEQ.tif
inst/external/rast_farms_SEQ1_500.tif
inst/external/rast_farms_SEQ_1000.tif
inst/external/rast_farms_SEQ_2000.tif
inst/external/rast_farms_SEQ_3000.tif
inst/external/rast_farms_SEQ_4000.tif
inst/external/rast_farms_SEQ_500.tif
inst/external/rast_farms_SEQ_5000.tif
inst/external/rast_newr_NSW.tif
inst/include/contactsimulator.h
inst/include/contactsimulator_RcppExports.h
man/Conf_Band.Rd
man/E_to_I.Rd
man/I_to_R.Rd
man/Inv_trans.Rd
man/Log_likelihood.Rd
man/Plot_dyn.Rd
man/Samp_dis.Rd
man/Simulate.Rd
man/Simulate_contact_control.Rd
man/Simulate_contact_control1.Rd
man/Simulate_contact_control2.Rd
man/Simulate_contact_control3.Rd
man/Simulate_contact_control_LER.Rd
man/Simulate_contact_control_LER_africa.Rd
man/Simulate_contact_control_LER_farm.Rd
man/Simulate_contact_control_v0.Rd
man/Simulate_contact_model.Rd
man/Sub_set.Rd
man/Sum_Leaf_emergence_rate.Rd
man/Trajectory.Rd
man/Trajectory_all.Rd
man/Trajectory_dis.Rd
man/Trajectory_ripley.Rd
man/circle_line_intersections.Rd
man/contact.Rd
man/contact_fun.Rd
man/contactsimulator-package.Rd
man/contat_class.Rd
man/func_arcs_attributes.Rd
man/func_time_beta.Rd
man/hello.Rd
man/mcmc_leaf.Rd
man/rBTFinv3.Rd
man/rBTFinv4.Rd
man/r_IR.Rd
man/simulate_NHPP_next_event.Rd
src/.gitignore
src/Makevars
src/Makevars.in
src/RcppExports.cpp
src/contactfunctions.cpp
src/header.h
src/leaf_estimation_mcmc.cpp
tests/testthat.R
vignettes/my-vignette.Rmd
