plot.logicFS: Variable Importance Plot
In holgerschw/logicFS: Identification of SNP Interactions

Description Usage Arguments Author(s) See Also

Generates a dotchart of the importance of the most important interactions for an object of class logicFS or logicBagg.

## S3 method for class 'logicFS'
plot(x, topX = 15, cex = 0.9, pch = 16, col = 1, show.prop = FALSE, 
   force.topX = FALSE, coded = TRUE, add.thres = TRUE, thres = NULL, 
   include0 = TRUE, add.v0 = TRUE, v0.col = "grey50", main = NULL, ...)

## S3 method for class 'logicBagg'
plot(x, topX = 15, cex = 0.9, pch = 16, col = 1, show.prop = FALSE, 
   force.topX = FALSE, coded = TRUE, include0 = TRUE, add.v0 = TRUE,
   v0.col = "grey50", main = NULL, ...)

`x`	an object of either class `logicFS` or `logicBagg`.
`topX`	integer specifying how many interactions should be shown. If `topX` is larger than the number of interactions contained in `x` all the interactions are shown. For further information, see `force.topX`.
`cex`	a numeric value specifying the relative size of the text and symbols.
`pch`	specifies the used symbol. See the help of `par` for details.
`col`	the color of the text and the symbols. See the help of `par` for how colors can be specified.
`show.prop`	if `TRUE` the proportions of models that contain the interactions of interest are shown. If `FALSE` (default) the importances of the interactions are shown.
`force.topX`	if `TRUE` exactly `topX` interactions are shown. If `FALSE` (default) all interactions up to the `topX`th most important one and all interactions having the same importance as the `topX`th most important one are shown.
`coded`	should the coded variable names be displayed? Might be useful if the actual variable names are pretty long. The coded variable name of the j-th variable is `Xj`.
`add.thres`	should a vertical line marking the threshold for a prime implicant to be called important be drawn in the plot? If `TRUE`, this vertical line will be drawn at `NULL`.
`thres`	non-negative numeric value specifying the threshold for a prime implicant to be called important. If `NULL` and `add.thres = TRUE`, the suggested threshold from `x` will be used.
`include0`	should the x-axis include zero regardless whether the importances of the shown interactions are much higher than 0?
`add.v0`	should a vertical line be drawn at x = 0? Ignored if `include0 = FALSE` and all importances are larger than zero.
`v0.col`	the color of the vertical line at x = 0. See the help page of `par` for how colors can be specified.
`main`	character string naming the title of the plot. If `NULL`, the name of the importance measure is used.
`...`	Ignored.