API for homonecloco/bio.tilling
Look for deletions in exome captures
| Global functions | |
|---|---|
| categorizeDeletions | Source code |
| countDeletions | Source code |
| countMissing | Source code |
| filterLowQualityExons | Source code |
| filterSamplesPerSD | Source code |
| getAllDeletedExons | Source code |
| getAllScaffoldAverages | Source code |
| getAllScaffoldAveragesParallel | Source code |
| getAllScaffoldsWithDeletions | Source code |
| getDeletionCategory | Source code |
| getDeletionScore | Source code |
| getDeletions | Source code |
| getDeletionsInChromosome | Source code |
| getDeletionsPerCM | Source code |
| getExonsDF | Source code |
| getExonsDetails | Source code |
| getFieldFromExonName | Source code |
| getFieldFromExonNameNumeric | Source code |
| getHetExoDeletions | Source code |
| getHomExoDeletions | Source code |
| getHomSelectedDeletions | Source code |
| getLibSD | Source code |
| getMinimumDeletionValueInScaffold | Source code |
| getSampleName | Source code |
| getScaffoldAverages | Source code |
| getScaffoldAveragesByIndex | Source code |
| getValueType | Source code |
| getWholeExonDeletions | Source code Source code |
| getWholeExonDeletionsLibrary | Source code |
| getWholeExonDeletionsLibraryInner | Source code |
| getWholeScaffoldHetDeletions | Source code |
| getWholeScaffoldHetDeletionsLibrary | Source code |
| getWholeScaffoldHetDeletionsLibraryInner | Source code |
| get_all_deletions | Source code |
| homDeletionFilter | Source code |
| longestAdjacentDeletionInLibrary | Source code |
| longestAdjacentDeletions | Source code |
| longestClearDeletions | Source code |
| longestWithGoodFlanking | Source code |
| merge_deletions | Source code |
| normalizeCovs | Source code |
| plotDetailsOfContig | Source code |
| plotExonDetail | Source code |
| plotHistWithDensity | Source code |
| plotHistWithNormal | Source code |
| plotLibraryOnScaffold | Source code |
| plotWithLibFilter | Source code |
| readCoverageTable | Source code |
| validate_deletions | Source code |
