API for homonecloco/bio.tilling
Look for deletions in exome captures

Global functions
categorizeDeletions Source code
countDeletions Source code
countMissing Source code
filterLowQualityExons Source code
filterSamplesPerSD Source code
getAllDeletedExons Source code
getAllScaffoldAverages Source code
getAllScaffoldAveragesParallel Source code
getAllScaffoldsWithDeletions Source code
getDeletionCategory Source code
getDeletionScore Source code
getDeletions Source code
getDeletionsInChromosome Source code
getDeletionsPerCM Source code
getExonsDF Source code
getExonsDetails Source code
getFieldFromExonName Source code
getFieldFromExonNameNumeric Source code
getHetExoDeletions Source code
getHomExoDeletions Source code
getHomSelectedDeletions Source code
getLibSD Source code
getMinimumDeletionValueInScaffold Source code
getSampleName Source code
getScaffoldAverages Source code
getScaffoldAveragesByIndex Source code
getValueType Source code
getWholeExonDeletions Source code Source code
getWholeExonDeletionsLibrary Source code
getWholeExonDeletionsLibraryInner Source code
getWholeScaffoldHetDeletions Source code
getWholeScaffoldHetDeletionsLibrary Source code
getWholeScaffoldHetDeletionsLibraryInner Source code
get_all_deletions Source code
homDeletionFilter Source code
longestAdjacentDeletionInLibrary Source code
longestAdjacentDeletions Source code
longestClearDeletions Source code
longestWithGoodFlanking Source code
merge_deletions Source code
normalizeCovs Source code
plotDetailsOfContig Source code
plotExonDetail Source code
plotHistWithDensity Source code
plotHistWithNormal Source code
plotLibraryOnScaffold Source code
plotWithLibFilter Source code
readCoverageTable Source code
validate_deletions Source code
homonecloco/bio.tilling documentation built on May 17, 2019, 4:51 p.m.