Global functions | |
---|---|
categorizeDeletions | Source code |
countDeletions | Source code |
countMissing | Source code |
filterLowQualityExons | Source code |
filterSamplesPerSD | Source code |
getAllDeletedExons | Source code |
getAllScaffoldAverages | Source code |
getAllScaffoldAveragesParallel | Source code |
getAllScaffoldsWithDeletions | Source code |
getDeletionCategory | Source code |
getDeletionScore | Source code |
getDeletions | Source code |
getDeletionsInChromosome | Source code |
getDeletionsPerCM | Source code |
getExonsDF | Source code |
getExonsDetails | Source code |
getFieldFromExonName | Source code |
getFieldFromExonNameNumeric | Source code |
getHetExoDeletions | Source code |
getHomExoDeletions | Source code |
getHomSelectedDeletions | Source code |
getLibSD | Source code |
getMinimumDeletionValueInScaffold | Source code |
getSampleName | Source code |
getScaffoldAverages | Source code |
getScaffoldAveragesByIndex | Source code |
getValueType | Source code |
getWholeExonDeletions | Source code Source code |
getWholeExonDeletionsLibrary | Source code |
getWholeExonDeletionsLibraryInner | Source code |
getWholeScaffoldHetDeletions | Source code |
getWholeScaffoldHetDeletionsLibrary | Source code |
getWholeScaffoldHetDeletionsLibraryInner | Source code |
get_all_deletions | Source code |
homDeletionFilter | Source code |
longestAdjacentDeletionInLibrary | Source code |
longestAdjacentDeletions | Source code |
longestClearDeletions | Source code |
longestWithGoodFlanking | Source code |
merge_deletions | Source code |
normalizeCovs | Source code |
plotDetailsOfContig | Source code |
plotExonDetail | Source code |
plotHistWithDensity | Source code |
plotHistWithNormal | Source code |
plotLibraryOnScaffold | Source code |
plotWithLibFilter | Source code |
readCoverageTable | Source code |
validate_deletions | Source code |
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